Wall clock time and date at job start Tue Mar 31 2020 06:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.46899 * 2 1 4 4 C 1.46498 * 120.00121 * 269.99509 * 3 2 1 5 5 C 1.50694 * 109.47382 * 270.00329 * 4 3 2 6 6 H 1.07999 * 119.99920 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00347 * 179.97438 * 5 4 3 8 8 N 1.31521 * 119.99659 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00356 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46786 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46729 * 120.00454 * 9 7 5 12 12 H 1.48492 * 109.47287 * 240.00524 * 9 7 5 13 13 C 1.34776 * 119.99674 * 89.99966 * 3 2 1 14 14 O 1.21287 * 119.99786 * 180.02562 * 13 3 2 15 15 C 1.50700 * 120.00437 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.46890 * 180.02562 * 15 13 3 17 17 C 1.46900 * 110.99538 * 179.97438 * 16 15 13 18 18 H 1.08994 * 109.47530 * 325.00132 * 17 16 15 19 19 C 1.53002 * 109.47098 * 85.00181 * 17 16 15 20 20 C 1.50703 * 109.47307 * 204.99940 * 17 16 15 21 21 C 1.38225 * 119.61869 * 154.99985 * 20 17 16 22 22 C 1.38635 * 119.15939 * 179.97438 * 21 20 17 23 23 C 1.38675 * 118.41956 * 0.02562 * 22 21 20 24 24 C 1.38186 * 119.16332 * 0.27967 * 23 22 21 25 25 N 1.31860 * 119.61591 * 334.98341 * 20 17 16 26 26 H 1.09005 * 109.46673 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47782 * 300.00024 * 1 2 3 28 28 H 1.09007 * 109.46838 * 60.00521 * 1 2 3 29 29 H 1.08998 * 109.47314 * 240.00230 * 2 1 3 30 30 H 1.09001 * 109.47234 * 119.99333 * 2 1 3 31 31 H 1.09008 * 109.46535 * 30.00289 * 4 3 2 32 32 H 1.08997 * 109.47316 * 150.00112 * 4 3 2 33 33 H 0.97003 * 119.99945 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47077 * 60.00383 * 15 13 3 35 35 H 1.08997 * 109.46946 * 300.00054 * 15 13 3 36 36 H 1.00898 * 111.00005 * 56.05116 * 16 15 13 37 37 H 1.09000 * 109.47390 * 179.97438 * 19 17 16 38 38 H 1.08995 * 109.46892 * 299.99621 * 19 17 16 39 39 H 1.09000 * 109.47392 * 59.99739 * 19 17 16 40 40 H 1.07997 * 120.42090 * 359.96022 * 21 20 17 41 41 H 1.07998 * 120.78847 * 180.02562 * 22 21 20 42 42 H 1.08002 * 120.41399 * 179.97438 * 23 22 21 43 43 H 1.07999 * 119.61418 * 179.70216 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0957 7 6 4.1492 2.3897 -2.8779 8 7 3.3491 3.1258 -3.6180 9 14 5.9136 2.0968 -3.4167 10 1 6.6012 1.2416 -2.4161 11 1 5.9215 1.4173 -4.7371 12 1 6.6205 3.3981 -3.5254 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1603 1.1673 15 6 1.9912 1.3064 2.4723 16 7 2.3089 2.2066 3.5888 17 6 2.0743 1.5467 4.8802 18 1 1.2141 0.8825 4.7979 19 6 3.3108 0.7341 5.2696 20 6 1.8053 2.5886 5.9352 21 6 1.0709 2.2515 7.0567 22 6 0.8295 3.2173 8.0215 23 6 1.3377 4.4919 7.8211 24 6 2.0577 4.7568 6.6718 25 7 2.2735 3.8113 5.7780 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.5817 1.6877 -2.0284 32 1 2.0955 3.1411 -1.1384 33 1 3.6752 3.5163 -4.4439 34 1 2.6211 0.4187 2.5303 35 1 0.9431 1.0126 2.5299 36 1 1.7838 3.0655 3.5214 37 1 3.1370 0.2448 6.2280 38 1 3.5053 -0.0195 4.5066 39 1 4.1711 1.3983 5.3520 40 1 0.6897 1.2485 7.1796 41 1 0.2592 2.9825 8.9081 42 1 1.1686 5.2691 8.5518 43 1 2.4526 5.7482 6.5060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181780249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:19 Heat of formation + Delta-G solvation = -19.488224 kcal Electronic energy + Delta-G solvation = -22977.228640 eV Core-core repulsion = 19635.520357 eV Total energy + Delta-G solvation = -3341.708282 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.26027 -40.62885 -37.53847 -36.80874 -34.91159 -33.29708 -33.01792 -31.58189 -30.44764 -29.34458 -27.24433 -25.08525 -24.59760 -24.27658 -23.63187 -21.58770 -19.98228 -18.68294 -18.28917 -17.70802 -17.27095 -17.09859 -16.65087 -16.37011 -16.07298 -15.65030 -15.23046 -15.12574 -14.70707 -14.49262 -14.25693 -14.15380 -13.86291 -13.60766 -13.38834 -13.20415 -13.18520 -13.02413 -12.82017 -12.67889 -12.58123 -12.47155 -12.16520 -12.01127 -11.80878 -11.67460 -10.77119 -10.64644 -10.54686 -10.23333 -9.90487 -9.43504 -9.27120 -8.21976 -6.36635 0.18830 0.43994 1.35276 1.38637 1.50425 1.88620 2.27408 2.42400 2.89745 3.07097 3.14837 3.33824 3.76036 3.85580 4.08486 4.12516 4.21853 4.25970 4.31295 4.34778 4.43871 4.46095 4.49764 4.66524 4.67434 4.83643 4.86188 4.95975 4.99861 5.00322 5.06313 5.21505 5.23560 5.29895 5.36877 5.39863 5.59558 5.82886 5.87401 6.06252 6.08363 6.33488 6.72150 6.85724 7.18722 7.29759 7.55562 8.85215 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020891 B = 0.003352 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.950364 B = 8351.217985 C = 8878.720508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.264 3.736 5 C -0.540 4.540 6 H 0.052 0.948 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.969 3.031 10 H -0.267 1.267 11 H -0.267 1.267 12 H -0.283 1.283 13 C 0.492 3.508 14 O -0.588 6.588 15 C 0.058 3.942 16 N -0.678 5.678 17 C 0.135 3.865 18 H 0.087 0.913 19 C -0.130 4.130 20 C 0.102 3.898 21 C -0.166 4.166 22 C -0.076 4.076 23 C -0.173 4.173 24 C 0.076 3.924 25 N -0.506 5.506 26 H 0.097 0.903 27 H 0.058 0.942 28 H 0.036 0.964 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.022 0.978 32 H -0.008 1.008 33 H 0.267 0.733 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.344 0.656 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.037 0.963 40 H 0.162 0.838 41 H 0.168 0.832 42 H 0.161 0.839 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.894 -8.563 24.549 27.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.142 3.858 5 C -0.579 4.579 6 H 0.070 0.930 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.793 3.207 10 H -0.192 1.192 11 H -0.192 1.192 12 H -0.209 1.209 13 C 0.281 3.719 14 O -0.468 6.468 15 C -0.074 4.074 16 N -0.311 5.311 17 C 0.026 3.974 18 H 0.104 0.896 19 C -0.189 4.189 20 C -0.036 4.036 21 C -0.186 4.186 22 C -0.101 4.101 23 C -0.193 4.193 24 C -0.080 4.080 25 N -0.215 5.215 26 H 0.116 0.884 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.040 0.960 32 H 0.010 0.990 33 H 0.076 0.924 34 H 0.135 0.865 35 H 0.102 0.898 36 H 0.164 0.836 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.056 0.944 40 H 0.180 0.820 41 H 0.186 0.814 42 H 0.179 0.821 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.550 -7.836 23.610 25.997 hybrid contribution -0.367 0.490 -0.247 0.660 sum -7.917 -7.346 23.363 25.738 Atomic orbital electron populations 1.22152 0.94601 1.03532 1.01516 1.21756 0.95264 0.81291 1.03984 1.48287 1.64166 1.15189 1.06072 1.18658 0.95235 0.91357 0.80549 1.21752 0.97934 1.31857 1.06368 0.92987 1.25882 1.02473 0.94490 0.96468 1.70067 1.37713 1.34338 1.14845 0.85351 0.78947 0.77988 0.78416 1.19160 1.19172 1.20865 1.21316 0.77339 0.86690 0.86578 1.90652 1.47346 1.20869 1.87899 1.21892 1.01936 0.96338 0.87203 1.60029 1.64047 1.06693 1.00362 1.20583 0.99052 0.92310 0.85498 0.89580 1.21763 0.96125 0.98889 1.02083 1.21491 0.94445 0.92002 0.95681 1.22204 0.99677 1.02462 0.94250 1.22006 0.96562 0.92346 0.99224 1.22490 0.98840 0.99053 0.98909 1.23139 0.95822 0.98553 0.90532 1.67442 1.20160 1.02020 1.31921 0.88411 0.92273 0.94489 0.91014 0.88025 0.96012 0.98964 0.92445 0.86475 0.89836 0.83611 0.89932 0.91344 0.94407 0.82022 0.81411 0.82097 0.82247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 10.24 71.98 0.74 -3.20 16 2 C 0.10 3.05 5.93 86.38 0.51 3.56 16 3 N -0.61 -26.61 2.46 -826.15 -2.03 -28.63 16 4 C 0.26 14.85 5.16 85.63 0.44 15.29 16 5 C -0.54 -32.49 9.39 25.60 0.24 -32.25 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.33 5.46 84.65 0.46 0.79 16 8 N -0.93 -58.09 13.29 21.45 0.28 -57.80 16 9 Si 0.97 46.64 29.54 68.60 2.03 48.66 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 13 C 0.49 21.73 7.71 87.66 0.68 22.41 16 14 O -0.59 -33.00 15.78 -3.05 -0.05 -33.05 16 15 C 0.06 1.73 4.52 85.56 0.39 2.12 16 16 N -0.68 -21.52 5.68 -499.47 -2.84 -24.36 16 17 C 0.14 3.02 2.86 44.17 0.13 3.15 16 18 H 0.09 1.41 7.77 -2.39 -0.02 1.39 16 19 C -0.13 -2.65 9.40 71.98 0.68 -1.98 16 20 C 0.10 2.34 5.70 42.55 0.24 2.58 16 21 C -0.17 -2.55 9.77 22.36 0.22 -2.34 16 22 C -0.08 -0.95 10.18 22.47 0.23 -0.73 16 23 C -0.17 -2.56 10.11 22.36 0.23 -2.34 16 24 C 0.08 1.67 11.18 84.67 0.95 2.61 16 25 N -0.51 -14.30 9.29 -183.88 -1.71 -16.01 16 26 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 27 H 0.06 1.34 7.22 -2.39 -0.02 1.32 16 28 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 30 H 0.10 2.35 6.44 -2.39 -0.02 2.33 16 31 H 0.02 1.24 8.07 -2.38 -0.02 1.22 16 32 H -0.01 -0.51 7.42 -2.39 -0.02 -0.53 16 33 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 34 H 0.12 2.96 6.70 -2.39 -0.02 2.94 16 35 H 0.08 1.92 7.10 -2.39 -0.02 1.91 16 36 H 0.34 12.53 7.55 -89.70 -0.68 11.85 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 1.30 7.45 -2.39 -0.02 1.28 16 39 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 41 H 0.17 0.90 8.06 -2.91 -0.02 0.87 16 42 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 43 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -84.20 359.65 2.13 -82.06 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.32 Total: 19.44 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 6.12 Total: 9.69 kcal Atomic # 7 Polarization: -120.52 SS G_CDS: -6.29 Total: -126.81 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.05 Total: -33.05 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal Total: -84.20 2.13 -82.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181780249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.575 kcal (2) G-P(sol) polarization free energy of solvation -84.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds