Wall clock time and date at job start Tue Mar 31 2020 06:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47341 * 2 1 4 4 C 1.46496 * 120.00325 * 270.00257 * 3 2 1 5 5 C 1.50700 * 109.47097 * 270.00110 * 4 3 2 6 6 H 1.08006 * 120.00073 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00271 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99672 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99921 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47686 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47040 * 120.00186 * 9 7 5 12 12 H 1.48510 * 109.47017 * 239.99668 * 9 7 5 13 13 C 1.34782 * 119.99624 * 90.00358 * 3 2 1 14 14 O 1.21281 * 119.99733 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00210 * 359.97438 * 13 3 2 16 16 N 1.46897 * 109.47046 * 180.02562 * 15 13 3 17 17 C 1.46901 * 110.99869 * 180.02562 * 16 15 13 18 18 H 1.09000 * 109.47240 * 34.99837 * 17 16 15 19 19 C 1.52993 * 109.47143 * 274.99490 * 17 16 15 20 20 C 1.50703 * 109.47248 * 154.99255 * 17 16 15 21 21 C 1.38225 * 119.61869 * 204.99689 * 20 17 16 22 22 C 1.38635 * 119.15939 * 179.97438 * 21 20 17 23 23 C 1.38675 * 118.41956 * 0.02562 * 22 21 20 24 24 C 1.38186 * 119.16332 * 0.27967 * 23 22 21 25 25 N 1.31860 * 119.61591 * 24.98045 * 20 17 16 26 26 H 1.09007 * 109.47422 * 59.99603 * 1 2 3 27 27 H 1.09000 * 109.47513 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47353 * 299.99652 * 1 2 3 29 29 H 1.08998 * 109.46642 * 239.99772 * 2 1 3 30 30 H 1.09002 * 109.46746 * 120.00521 * 2 1 3 31 31 H 1.08999 * 109.46910 * 29.99921 * 4 3 2 32 32 H 1.08999 * 109.47175 * 150.00304 * 4 3 2 33 33 H 0.96996 * 119.99977 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.47109 * 60.00028 * 15 13 3 35 35 H 1.09007 * 109.46964 * 300.00441 * 15 13 3 36 36 H 1.00906 * 110.99718 * 303.94691 * 16 15 13 37 37 H 1.09004 * 109.47075 * 299.99851 * 19 17 16 38 38 H 1.09006 * 109.47229 * 59.99659 * 19 17 16 39 39 H 1.08995 * 109.47357 * 180.02562 * 19 17 16 40 40 H 1.07997 * 120.42054 * 0.02562 * 21 20 17 41 41 H 1.07999 * 120.78848 * 179.97438 * 22 21 20 42 42 H 1.08002 * 120.41399 * 179.97438 * 23 22 21 43 43 H 1.07999 * 119.61418 * 179.70216 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3426 1.2300 -1.0962 7 6 4.1494 2.3905 -2.8774 8 7 3.3495 3.1266 -3.6174 9 14 5.9138 2.0974 -3.4163 10 1 6.6015 1.2421 -2.4159 11 1 5.9217 1.4190 -4.7373 12 1 6.6211 3.3988 -3.5239 13 6 2.2431 2.0164 1.1673 14 8 2.6469 3.1600 1.1673 15 6 1.9914 1.3062 2.4724 16 7 2.3092 2.2063 3.5889 17 6 2.0758 1.5459 4.8802 18 1 2.3275 0.4885 4.7983 19 6 0.6031 1.6912 5.2685 20 6 2.9393 2.1873 5.9358 21 6 3.2976 1.4638 7.0577 22 6 4.0927 2.0630 8.0224 23 6 4.4989 3.3737 7.8220 24 6 4.0958 4.0362 6.6783 25 7 3.3444 3.4322 5.7782 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.5817 1.6877 -2.0283 32 1 2.0956 3.1410 -1.1382 33 1 3.6757 3.5177 -4.4429 34 1 2.6212 0.4184 2.5302 35 1 0.9432 1.0124 2.5299 36 1 3.2576 2.5442 3.5222 37 1 0.3516 2.7486 5.3505 38 1 -0.0214 1.2272 4.5050 39 1 0.4300 1.2016 6.2268 40 1 2.9632 0.4443 7.1807 41 1 4.3879 1.5222 8.9094 42 1 5.1184 3.8720 8.5530 43 1 4.4039 5.0586 6.5171 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181780268.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:24 Heat of formation + Delta-G solvation = 5.423166 kcal Electronic energy + Delta-G solvation = -22991.311070 eV Core-core repulsion = 19650.683026 eV Total energy + Delta-G solvation = -3340.628043 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.46582 -39.00598 -36.43522 -35.12015 -32.81478 -32.56451 -31.96485 -30.03242 -29.55199 -27.61405 -25.75307 -24.04575 -23.53813 -22.94772 -22.12491 -20.70986 -18.45404 -17.20986 -16.68613 -16.41021 -16.14695 -15.75543 -15.41737 -15.27842 -14.54072 -14.39921 -14.11783 -13.79644 -13.40818 -13.28116 -13.25068 -12.90920 -12.59782 -12.29253 -12.18560 -12.00513 -11.77140 -11.74299 -11.44921 -11.18161 -11.02433 -10.84426 -10.68175 -10.49063 -10.08122 -10.05364 -9.55909 -9.48152 -9.18986 -8.78114 -8.39174 -8.18526 -7.56429 -5.99567 -4.03956 0.90615 1.11854 3.32242 3.39659 3.43161 3.55940 3.62960 3.79604 4.05800 4.32844 4.49503 4.63120 4.66307 4.87770 4.98153 5.07789 5.14077 5.28632 5.34281 5.35717 5.38832 5.51038 5.52405 5.58611 5.65232 5.72053 5.81030 5.87214 5.89940 5.96341 6.08084 6.21495 6.28329 6.50990 6.53612 6.98356 7.21474 7.52621 7.59259 7.64467 7.94036 7.97920 8.29801 8.53103 8.96857 9.22521 9.61147 11.08488 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017309 B = 0.003618 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.285638 B = 7736.793391 C = 8795.205490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.601 5.601 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.504 3.496 14 O -0.524 6.524 15 C 0.039 3.961 16 N -0.653 5.653 17 C 0.135 3.865 18 H 0.058 0.942 19 C -0.134 4.134 20 C 0.128 3.872 21 C -0.170 4.170 22 C -0.077 4.077 23 C -0.180 4.180 24 C 0.103 3.897 25 N -0.457 5.457 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.262 0.738 34 H 0.050 0.950 35 H 0.094 0.906 36 H 0.360 0.640 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.174 -7.584 22.115 23.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.334 5.334 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.290 3.710 14 O -0.400 6.400 15 C -0.094 4.094 16 N -0.288 5.288 17 C 0.024 3.976 18 H 0.076 0.924 19 C -0.193 4.193 20 C -0.011 4.011 21 C -0.190 4.190 22 C -0.103 4.103 23 C -0.200 4.200 24 C -0.054 4.054 25 N -0.165 5.165 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.112 0.888 36 H 0.181 0.819 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.808 -6.083 21.148 22.332 hybrid contribution 2.006 -1.298 0.446 2.431 sum -1.802 -7.382 21.594 22.891 Atomic orbital electron populations 1.22227 0.96858 1.01262 1.02408 1.21385 0.93483 0.84398 1.02446 1.48244 1.64281 1.13157 1.07692 1.19237 0.96091 0.93709 0.78157 1.21487 0.97016 1.31644 1.06152 0.92550 1.24937 0.97777 0.94996 0.96454 1.69943 1.35534 1.33538 1.14356 0.86459 0.84779 0.78023 0.78233 1.19901 1.21007 1.20888 1.20153 0.78945 0.87108 0.84811 1.90688 1.44810 1.17638 1.86857 1.21999 1.02200 0.94275 0.90889 1.60089 1.33792 1.36353 0.98570 1.20433 0.94755 0.94966 0.87451 0.92442 1.21776 0.93800 1.03229 1.00452 1.21352 0.94851 0.90502 0.94366 1.21904 1.00313 1.01467 0.95367 1.21535 0.95341 0.94901 0.98493 1.22177 1.02230 0.95895 0.99724 1.22890 0.92959 1.00104 0.89449 1.67556 1.09589 1.09545 1.29828 0.92034 0.92306 0.93004 0.90078 0.92002 0.95116 0.93882 0.92826 0.93246 0.88807 0.81859 0.91423 0.91834 0.92685 0.84907 0.84952 0.84919 0.82591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.24 37.16 0.38 -1.91 16 2 C 0.11 1.74 5.93 -4.05 -0.02 1.71 16 3 N -0.60 -12.96 2.46 -175.07 -0.43 -13.39 16 4 C 0.25 6.61 5.16 -5.20 -0.03 6.59 16 5 C -0.52 -15.15 9.39 -34.44 -0.32 -15.48 16 6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -27.06 13.29 55.43 0.74 -26.33 16 9 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 13 C 0.50 10.90 7.71 -10.98 -0.08 10.81 16 14 O -0.52 -13.88 15.78 5.56 0.09 -13.79 16 15 C 0.04 0.61 4.52 -4.98 -0.02 0.59 16 16 N -0.65 -10.44 5.68 -109.22 -0.62 -11.06 16 17 C 0.13 1.63 2.86 -68.87 -0.20 1.43 16 18 H 0.06 0.59 7.77 -51.93 -0.40 0.19 16 19 C -0.13 -1.43 9.40 37.15 0.35 -1.08 16 20 C 0.13 1.56 5.70 -82.58 -0.47 1.09 16 21 C -0.17 -1.60 9.77 -39.44 -0.39 -1.99 16 22 C -0.08 -0.63 10.18 -39.27 -0.40 -1.03 16 23 C -0.18 -1.55 10.11 -39.44 -0.40 -1.95 16 24 C 0.10 1.14 11.18 -17.55 -0.20 0.94 16 25 N -0.46 -6.36 9.28 -9.47 -0.09 -6.45 16 26 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.67 7.22 -51.93 -0.37 0.30 16 29 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 30 H 0.06 0.83 6.44 -51.93 -0.33 0.49 16 31 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.05 0.69 7.31 -51.93 -0.38 0.31 16 35 H 0.09 1.27 6.48 -51.92 -0.34 0.94 16 36 H 0.36 6.48 7.55 -39.29 -0.30 6.19 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.64 7.45 -51.93 -0.39 0.26 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 43 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 359.65 15.07 5.42 5.42 Total: -1.00 -35.30 359.65 -8.48 -43.78 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.66 Total: 3.23 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -1.90 Total: 1.37 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.40 Total: -57.23 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.09 Total: -13.79 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.30 -8.48 -43.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181780268.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.203 kcal (2) G-P(sol) polarization free energy of solvation -35.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds