Wall clock time and date at job start Tue Mar 31 2020 06:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47341 * 2 1 4 4 C 1.46496 * 120.00325 * 270.00257 * 3 2 1 5 5 C 1.50700 * 109.47097 * 270.00110 * 4 3 2 6 6 H 1.08006 * 120.00073 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00271 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99672 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99921 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47686 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47040 * 120.00186 * 9 7 5 12 12 H 1.48510 * 109.47017 * 239.99668 * 9 7 5 13 13 C 1.34782 * 119.99624 * 90.00358 * 3 2 1 14 14 O 1.21281 * 119.99733 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00210 * 359.97438 * 13 3 2 16 16 N 1.46897 * 109.47046 * 180.02562 * 15 13 3 17 17 C 1.46901 * 110.99869 * 180.02562 * 16 15 13 18 18 H 1.09000 * 109.47240 * 34.99837 * 17 16 15 19 19 C 1.52993 * 109.47143 * 274.99490 * 17 16 15 20 20 C 1.50703 * 109.47248 * 154.99255 * 17 16 15 21 21 C 1.38225 * 119.61869 * 204.99689 * 20 17 16 22 22 C 1.38635 * 119.15939 * 179.97438 * 21 20 17 23 23 C 1.38675 * 118.41956 * 0.02562 * 22 21 20 24 24 C 1.38186 * 119.16332 * 0.27967 * 23 22 21 25 25 N 1.31860 * 119.61591 * 24.98045 * 20 17 16 26 26 H 1.09007 * 109.47422 * 59.99603 * 1 2 3 27 27 H 1.09000 * 109.47513 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47353 * 299.99652 * 1 2 3 29 29 H 1.08998 * 109.46642 * 239.99772 * 2 1 3 30 30 H 1.09002 * 109.46746 * 120.00521 * 2 1 3 31 31 H 1.08999 * 109.46910 * 29.99921 * 4 3 2 32 32 H 1.08999 * 109.47175 * 150.00304 * 4 3 2 33 33 H 0.96996 * 119.99977 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.47109 * 60.00028 * 15 13 3 35 35 H 1.09007 * 109.46964 * 300.00441 * 15 13 3 36 36 H 1.00906 * 110.99718 * 303.94691 * 16 15 13 37 37 H 1.09004 * 109.47075 * 299.99851 * 19 17 16 38 38 H 1.09006 * 109.47229 * 59.99659 * 19 17 16 39 39 H 1.08995 * 109.47357 * 180.02562 * 19 17 16 40 40 H 1.07997 * 120.42054 * 0.02562 * 21 20 17 41 41 H 1.07999 * 120.78848 * 179.97438 * 22 21 20 42 42 H 1.08002 * 120.41399 * 179.97438 * 23 22 21 43 43 H 1.07999 * 119.61418 * 179.70216 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3426 1.2300 -1.0962 7 6 4.1494 2.3905 -2.8774 8 7 3.3495 3.1266 -3.6174 9 14 5.9138 2.0974 -3.4163 10 1 6.6015 1.2421 -2.4159 11 1 5.9217 1.4190 -4.7373 12 1 6.6211 3.3988 -3.5239 13 6 2.2431 2.0164 1.1673 14 8 2.6469 3.1600 1.1673 15 6 1.9914 1.3062 2.4724 16 7 2.3092 2.2063 3.5889 17 6 2.0758 1.5459 4.8802 18 1 2.3275 0.4885 4.7983 19 6 0.6031 1.6912 5.2685 20 6 2.9393 2.1873 5.9358 21 6 3.2976 1.4638 7.0577 22 6 4.0927 2.0630 8.0224 23 6 4.4989 3.3737 7.8220 24 6 4.0958 4.0362 6.6783 25 7 3.3444 3.4322 5.7782 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.5817 1.6877 -2.0283 32 1 2.0956 3.1410 -1.1382 33 1 3.6757 3.5177 -4.4429 34 1 2.6212 0.4184 2.5302 35 1 0.9432 1.0124 2.5299 36 1 3.2576 2.5442 3.5222 37 1 0.3516 2.7486 5.3505 38 1 -0.0214 1.2272 4.5050 39 1 0.4300 1.2016 6.2268 40 1 2.9632 0.4443 7.1807 41 1 4.3879 1.5222 8.9094 42 1 5.1184 3.8720 8.5530 43 1 4.4039 5.0586 6.5171 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181780268.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:23 Heat of formation + Delta-G solvation = -19.669388 kcal Electronic energy + Delta-G solvation = -22992.399164 eV Core-core repulsion = 19650.683026 eV Total energy + Delta-G solvation = -3341.716138 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.26158 -40.62921 -37.53701 -36.80893 -34.91822 -33.30078 -33.01758 -31.57677 -30.45223 -29.33604 -27.24440 -25.09461 -24.59244 -24.27661 -23.62721 -21.58501 -20.00871 -18.64660 -18.27415 -17.70967 -17.20796 -17.16969 -16.72838 -16.40373 -16.11048 -15.55848 -15.15342 -15.08812 -14.67399 -14.63341 -14.30746 -14.11582 -13.84504 -13.58345 -13.41895 -13.23621 -13.15541 -13.02635 -12.79190 -12.68208 -12.58487 -12.47097 -12.15621 -11.95537 -11.85191 -11.68496 -10.77504 -10.65477 -10.56144 -10.24079 -9.90626 -9.40927 -9.30316 -8.22418 -6.37580 0.18511 0.43551 1.34587 1.37704 1.49242 1.89117 2.26041 2.42015 2.89444 3.06533 3.14706 3.33775 3.76252 3.85196 4.08105 4.11314 4.21494 4.28875 4.32659 4.34928 4.38638 4.46666 4.50238 4.67123 4.69106 4.83631 4.86403 4.96886 5.00473 5.01494 5.06954 5.21635 5.23451 5.29475 5.37340 5.41903 5.58874 5.82480 5.87324 6.05090 6.07848 6.30825 6.71228 6.85675 7.18148 7.28883 7.55405 8.84852 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017309 B = 0.003618 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.285638 B = 7736.793391 C = 8795.205490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.263 3.737 5 C -0.541 4.541 6 H 0.053 0.947 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.970 3.030 10 H -0.267 1.267 11 H -0.267 1.267 12 H -0.283 1.283 13 C 0.492 3.508 14 O -0.588 6.588 15 C 0.057 3.943 16 N -0.676 5.676 17 C 0.134 3.866 18 H 0.084 0.916 19 C -0.129 4.129 20 C 0.102 3.898 21 C -0.167 4.167 22 C -0.076 4.076 23 C -0.174 4.174 24 C 0.076 3.924 25 N -0.506 5.506 26 H 0.035 0.965 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.021 0.979 32 H -0.008 1.008 33 H 0.267 0.733 34 H 0.079 0.921 35 H 0.123 0.877 36 H 0.343 0.657 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.162 0.838 41 H 0.168 0.832 42 H 0.161 0.839 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.625 -10.766 24.539 26.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.142 3.858 5 C -0.580 4.580 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.794 3.206 10 H -0.191 1.191 11 H -0.192 1.192 12 H -0.209 1.209 13 C 0.281 3.719 14 O -0.468 6.468 15 C -0.074 4.074 16 N -0.309 5.309 17 C 0.024 3.976 18 H 0.102 0.898 19 C -0.187 4.187 20 C -0.037 4.037 21 C -0.187 4.187 22 C -0.102 4.102 23 C -0.193 4.193 24 C -0.080 4.080 25 N -0.215 5.215 26 H 0.055 0.945 27 H 0.116 0.884 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.119 0.881 31 H 0.039 0.961 32 H 0.010 0.990 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.141 0.859 36 H 0.162 0.838 37 H 0.058 0.942 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.180 0.820 41 H 0.186 0.814 42 H 0.179 0.821 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.300 -9.326 23.595 25.585 hybrid contribution 1.808 -0.285 -0.252 1.848 sum -1.491 -9.611 23.344 25.289 Atomic orbital electron populations 1.22157 0.94569 1.03527 1.01634 1.21753 0.95341 0.81257 1.03908 1.48285 1.64211 1.15155 1.06070 1.18658 0.95255 0.91359 0.80546 1.21748 0.97894 1.31874 1.06489 0.92915 1.25896 1.02516 0.94478 0.96458 1.70066 1.37740 1.34249 1.14850 0.85342 0.78863 0.77973 0.78440 1.19115 1.19197 1.20860 1.21305 0.77369 0.86660 0.86574 1.90651 1.47581 1.20627 1.87898 1.21911 1.04333 0.93962 0.87242 1.60082 1.32789 1.37679 1.00366 1.20599 0.95566 0.95910 0.85488 0.89806 1.21754 0.93077 1.01761 1.02121 1.21507 0.95952 0.90519 0.95677 1.22207 0.99673 1.02461 0.94328 1.22006 0.94231 0.94710 0.99215 1.22490 1.01528 0.96291 0.99022 1.23141 0.93660 1.00799 0.90442 1.67440 1.11285 1.11112 1.31674 0.94538 0.88411 0.92102 0.91037 0.88075 0.96072 0.99011 0.92425 0.90386 0.85918 0.83761 0.94228 0.91106 0.90005 0.82045 0.81430 0.82097 0.82221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.01 10.24 71.98 0.74 -3.27 16 2 C 0.10 3.06 5.93 86.38 0.51 3.57 16 3 N -0.61 -26.64 2.46 -826.18 -2.03 -28.66 16 4 C 0.26 14.85 5.16 85.63 0.44 15.30 16 5 C -0.54 -32.31 9.39 25.60 0.24 -32.07 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.31 5.46 84.66 0.46 0.77 16 8 N -0.93 -57.95 13.29 21.45 0.28 -57.66 16 9 Si 0.97 46.17 29.54 68.60 2.03 48.20 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 13 C 0.49 21.76 7.71 87.66 0.68 22.43 16 14 O -0.59 -33.01 15.78 -3.03 -0.05 -33.06 16 15 C 0.06 1.71 4.52 85.56 0.39 2.10 16 16 N -0.68 -21.48 5.68 -499.46 -2.83 -24.32 16 17 C 0.13 3.00 2.86 44.17 0.13 3.13 16 18 H 0.08 1.42 7.77 -2.39 -0.02 1.40 16 19 C -0.13 -2.50 9.40 71.98 0.68 -1.83 16 20 C 0.10 2.37 5.70 42.55 0.24 2.61 16 21 C -0.17 -2.65 9.77 22.36 0.22 -2.43 16 22 C -0.08 -1.00 10.18 22.47 0.23 -0.77 16 23 C -0.17 -2.66 10.11 22.36 0.23 -2.43 16 24 C 0.08 1.70 11.18 84.67 0.95 2.65 16 25 N -0.51 -14.46 9.28 -183.88 -1.71 -16.16 16 26 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.06 1.41 7.22 -2.39 -0.02 1.40 16 29 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 30 H 0.10 2.33 6.44 -2.39 -0.02 2.31 16 31 H 0.02 1.21 8.07 -2.39 -0.02 1.19 16 32 H -0.01 -0.54 7.42 -2.39 -0.02 -0.56 16 33 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 34 H 0.08 1.90 7.31 -2.39 -0.02 1.88 16 35 H 0.12 2.94 6.48 -2.38 -0.02 2.93 16 36 H 0.34 12.82 7.55 -89.69 -0.68 12.15 16 37 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.07 1.24 7.45 -2.38 -0.02 1.22 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 41 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 42 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 43 H 0.16 3.08 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -83.72 359.65 2.13 -81.59 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 0.32 Total: 20.33 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 6.12 Total: 9.76 kcal Atomic # 7 Polarization: -120.52 SS G_CDS: -6.29 Total: -126.81 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -0.05 Total: -33.06 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -83.72 2.13 -81.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181780268.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.918 kcal (2) G-P(sol) polarization free energy of solvation -83.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds