Wall clock time and date at job start Tue Mar 31 2020 07:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36984 * 119.99784 * 2 1 4 4 H 1.08005 * 120.00028 * 134.09440 * 3 2 1 5 5 C 1.38975 * 120.00470 * 313.82017 * 3 2 1 6 6 N 1.31408 * 120.00458 * 171.84030 * 5 3 2 7 7 Si 1.86803 * 119.99529 * 351.83690 * 5 3 2 8 8 H 1.48500 * 109.47201 * 85.02250 * 7 5 3 9 9 H 1.48504 * 109.46952 * 205.02423 * 7 5 3 10 10 H 1.48503 * 109.47197 * 325.02419 * 7 5 3 11 11 C 1.34774 * 120.00690 * 180.02562 * 2 1 3 12 12 O 1.21632 * 119.99044 * 354.43441 * 11 2 1 13 13 C 1.47356 * 120.00469 * 174.43709 * 11 2 1 14 14 C 1.38108 * 126.42079 * 353.29048 * 13 11 2 15 15 N 1.34289 * 107.40010 * 180.02562 * 14 13 11 16 16 C 1.46494 * 125.74736 * 180.02562 * 15 14 13 17 17 N 1.39934 * 108.50055 * 0.02562 * 15 14 13 18 18 C 1.30448 * 108.91364 * 359.71163 * 17 15 14 19 19 C 1.50696 * 125.98624 * 180.28506 * 18 17 15 20 20 C 1.52998 * 109.47062 * 60.19190 * 19 18 17 21 21 C 1.52999 * 109.46966 * 180.02562 * 20 19 18 22 22 C 1.52996 * 109.47417 * 59.99591 * 21 20 19 23 23 C 1.52998 * 109.47386 * 300.00151 * 22 21 20 24 24 C 1.52996 * 109.47328 * 300.18777 * 19 18 17 25 25 H 1.08995 * 109.46997 * 359.83814 * 1 2 3 26 26 H 1.09002 * 109.46721 * 119.83531 * 1 2 3 27 27 H 1.08993 * 109.46831 * 239.83567 * 1 2 3 28 28 H 0.96996 * 119.99947 * 180.02562 * 6 5 3 29 29 H 1.07994 * 126.29665 * 359.97438 * 14 13 11 30 30 H 1.09000 * 109.47874 * 90.00042 * 16 15 14 31 31 H 1.09002 * 109.47138 * 209.99956 * 16 15 14 32 32 H 1.08996 * 109.47497 * 329.99431 * 16 15 14 33 33 H 1.09002 * 109.46972 * 180.18740 * 19 18 17 34 34 H 1.09002 * 109.46860 * 299.99619 * 20 19 18 35 35 H 1.09003 * 109.47567 * 59.99707 * 20 19 18 36 36 H 1.09002 * 109.46979 * 299.99495 * 21 20 19 37 37 H 1.09001 * 109.47057 * 179.97438 * 21 20 19 38 38 H 1.09005 * 109.47268 * 179.97438 * 22 21 20 39 39 H 1.09002 * 109.47124 * 59.99993 * 22 21 20 40 40 H 1.09002 * 109.46860 * 300.00004 * 23 22 21 41 41 H 1.09003 * 109.47567 * 179.97438 * 23 22 21 42 42 H 1.09001 * 109.47333 * 300.00294 * 24 19 18 43 43 H 1.09002 * 109.47124 * 60.00056 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1499 1.1863 0.0000 4 1 2.9835 1.3286 0.6718 5 6 1.7757 2.2048 -0.8683 6 7 2.3233 3.3945 -0.7607 7 14 0.4942 1.8826 -2.1887 8 1 -0.8636 2.0661 -1.6161 9 1 0.6905 2.8341 -3.3118 10 1 0.6369 0.4913 -2.6880 11 6 2.1390 -1.1671 -0.0005 12 8 1.5351 -2.2180 0.1012 13 6 3.6074 -1.1700 -0.1242 14 6 4.4112 -0.0754 -0.3753 15 7 5.6815 -0.5097 -0.4107 16 6 6.8638 0.3216 -0.6494 17 7 5.6853 -1.8901 -0.1811 18 6 4.4573 -2.2926 -0.0036 19 6 4.0211 -3.7074 0.2775 20 6 4.6656 -4.1909 1.5781 21 6 4.2233 -5.6276 1.8632 22 6 4.6594 -6.5338 0.7102 23 6 4.0149 -6.0503 -0.5905 24 6 4.4568 -4.6140 -0.8754 25 1 -0.3633 1.0276 0.0029 26 1 -0.3633 -0.5113 -0.8915 27 1 -0.3633 -0.5164 0.8885 28 1 2.0618 4.1054 -1.3665 29 1 4.0793 0.9423 -0.5179 30 1 7.2428 0.6961 0.3015 31 1 7.6345 -0.2745 -1.1382 32 1 6.5942 1.1618 -1.2893 33 1 2.9360 -3.7404 0.3756 34 1 5.7507 -4.1580 1.4800 35 1 4.3553 -3.5451 2.3995 36 1 3.1382 -5.6610 1.9611 37 1 4.6828 -5.9722 2.7895 38 1 4.3447 -7.5574 0.9135 39 1 5.7445 -6.5004 0.6123 40 1 2.9298 -6.0837 -0.4925 41 1 4.3260 -6.6957 -1.4120 42 1 3.9976 -4.2696 -1.8020 43 1 5.5419 -4.5811 -0.9735 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263725052.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:51 Heat of formation + Delta-G solvation = 30.664358 kcal Electronic energy + Delta-G solvation = -24362.787053 eV Core-core repulsion = 21023.253550 eV Total energy + Delta-G solvation = -3339.533503 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.73944 -38.19394 -38.02383 -34.89746 -33.14976 -32.01895 -30.54208 -30.47377 -29.59686 -26.66475 -25.95389 -24.86205 -22.54842 -22.27209 -21.23927 -19.96688 -18.88421 -18.69826 -17.62342 -15.94179 -15.50604 -15.05019 -14.98977 -14.75026 -14.18096 -14.04328 -13.92166 -13.86826 -13.69807 -12.85122 -12.73891 -12.61140 -12.53419 -12.12469 -12.04677 -11.92398 -11.72212 -11.62952 -11.47858 -10.84942 -10.84409 -10.81784 -10.46983 -10.21914 -10.21217 -10.08988 -9.89901 -9.77297 -9.14751 -8.59757 -8.55286 -7.85818 -7.63145 -6.57034 -4.29356 2.45116 2.89955 3.02436 3.06984 3.18473 3.25623 4.05425 4.43645 4.57937 4.83719 4.93854 4.97443 5.06375 5.08688 5.40855 5.44816 5.54402 5.57089 5.65924 5.78901 5.80723 5.85394 5.86788 5.92243 6.07376 6.12118 6.22524 6.22728 6.31234 6.39052 6.43864 6.45413 6.46328 6.54983 6.61321 6.63519 6.67603 6.93154 7.29365 7.34668 7.66008 7.98409 8.15543 8.35069 8.88174 9.34299 9.72281 10.50756 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018508 B = 0.005607 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.467948 B = 4992.364970 C = 5925.649387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.476 5.476 3 C -0.342 4.342 4 H 0.107 0.893 5 C 0.063 3.937 6 N -0.870 5.870 7 Si 0.888 3.112 8 H -0.271 1.271 9 H -0.289 1.289 10 H -0.262 1.262 11 C 0.564 3.436 12 O -0.596 6.596 13 C -0.270 4.270 14 C 0.111 3.889 15 N -0.383 5.383 16 C 0.105 3.895 17 N -0.322 5.322 18 C 0.127 3.873 19 C -0.016 4.016 20 C -0.105 4.105 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.104 4.104 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.051 0.949 28 H 0.277 0.723 29 H 0.221 0.779 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.851 -8.877 0.246 10.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.198 5.198 3 C -0.470 4.470 4 H 0.124 0.876 5 C -0.144 4.144 6 N -0.506 5.506 7 Si 0.715 3.285 8 H -0.197 1.197 9 H -0.216 1.216 10 H -0.186 1.186 11 C 0.356 3.644 12 O -0.482 6.482 13 C -0.284 4.284 14 C -0.037 4.037 15 N -0.162 5.162 16 C -0.036 4.036 17 N -0.143 5.143 18 C -0.041 4.041 19 C -0.036 4.036 20 C -0.143 4.143 21 C -0.155 4.155 22 C -0.155 4.155 23 C -0.155 4.155 24 C -0.142 4.142 25 H 0.090 0.910 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.237 0.763 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.135 0.865 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.912 -9.395 0.146 11.664 hybrid contribution -1.385 0.746 -0.696 1.720 sum 5.527 -8.648 -0.550 10.278 Atomic orbital electron populations 1.21781 0.83041 1.01323 1.00565 1.43420 1.04012 1.05544 1.66776 1.19169 1.17145 0.89706 1.20950 0.87575 1.25526 0.97183 0.94943 0.96747 1.69654 1.42169 1.01513 1.37250 0.86763 0.81414 0.79070 0.81248 1.19704 1.21575 1.18588 1.17440 0.85555 0.83123 0.78313 1.90533 1.69913 1.31645 1.56118 1.20125 0.94622 0.92524 1.21165 1.25115 0.82254 1.02425 0.93903 1.48389 1.06542 1.06047 1.55255 1.21764 0.85866 0.93737 1.02271 1.76862 1.20989 0.90094 1.26369 1.22228 0.89517 0.95872 0.96505 1.19900 1.03087 0.86082 0.94511 1.21498 1.00281 0.95571 0.96970 1.21525 1.01338 0.95093 0.97567 1.21527 1.00340 0.98369 0.95248 1.21517 1.00861 0.96180 0.96970 1.21471 1.00833 0.94000 0.97918 0.91012 0.93834 0.93016 0.91243 0.76268 0.91134 0.89997 0.89400 0.86488 0.92006 0.92218 0.91739 0.92394 0.92518 0.92278 0.91713 0.92413 0.92187 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.66 7.90 59.85 0.47 2.13 16 2 N -0.48 -11.54 2.50 -123.44 -0.31 -11.85 16 3 C -0.34 -8.44 6.73 -14.98 -0.10 -8.54 16 4 H 0.11 2.73 6.27 -52.48 -0.33 2.40 16 5 C 0.06 1.57 5.32 -17.46 -0.09 1.47 16 6 N -0.87 -22.19 13.96 55.50 0.77 -21.42 16 7 Si 0.89 19.89 24.62 -169.99 -4.18 15.71 16 8 H -0.27 -5.81 6.66 56.52 0.38 -5.44 16 9 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.26 -6.10 6.99 56.52 0.40 -5.71 16 11 C 0.56 13.84 7.62 -12.55 -0.10 13.74 16 12 O -0.60 -15.16 14.61 5.25 0.08 -15.09 16 13 C -0.27 -6.12 6.01 -105.06 -0.63 -6.75 16 14 C 0.11 2.32 9.65 -16.52 -0.16 2.16 16 15 N -0.38 -7.05 3.98 -67.58 -0.27 -7.32 16 16 C 0.11 1.37 11.44 59.84 0.68 2.05 16 17 N -0.32 -6.31 12.50 33.90 0.42 -5.89 16 18 C 0.13 2.60 5.77 -82.01 -0.47 2.13 16 19 C -0.02 -0.28 2.53 -91.78 -0.23 -0.51 16 20 C -0.10 -1.63 5.19 -26.73 -0.14 -1.77 16 21 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 22 C -0.12 -1.38 5.92 -26.73 -0.16 -1.54 16 23 C -0.12 -1.52 5.92 -26.76 -0.16 -1.68 16 24 C -0.10 -1.63 5.18 -26.76 -0.14 -1.77 16 25 H 0.07 1.52 5.37 -51.93 -0.28 1.24 16 26 H 0.04 0.93 7.38 -51.93 -0.38 0.55 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.28 6.69 8.31 -40.82 -0.34 6.35 16 29 H 0.22 4.78 4.98 -52.49 -0.26 4.52 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.12 2.38 5.64 -51.93 -0.29 2.09 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 335.96 15.07 5.06 5.06 Total: -1.00 -28.87 335.96 -6.44 -35.31 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -6.63 Total: 6.03 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -1.38 Total: -0.55 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 0.62 Total: -46.47 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.08 Total: -15.09 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.18 Total: 15.71 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.87 -6.44 -35.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263725052.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.973 kcal (2) G-P(sol) polarization free energy of solvation -28.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds