Wall clock time and date at job start Tue Mar 31 2020 07:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36984 * 119.99784 * 2 1 4 4 H 1.08005 * 120.00028 * 134.09440 * 3 2 1 5 5 C 1.38975 * 120.00470 * 313.82017 * 3 2 1 6 6 N 1.31408 * 120.00458 * 171.84030 * 5 3 2 7 7 Si 1.86803 * 119.99529 * 351.83690 * 5 3 2 8 8 H 1.48500 * 109.47201 * 85.02250 * 7 5 3 9 9 H 1.48504 * 109.46952 * 205.02423 * 7 5 3 10 10 H 1.48503 * 109.47197 * 325.02419 * 7 5 3 11 11 C 1.34774 * 120.00690 * 180.02562 * 2 1 3 12 12 O 1.21632 * 119.99044 * 354.43441 * 11 2 1 13 13 C 1.47356 * 120.00469 * 174.43709 * 11 2 1 14 14 C 1.38108 * 126.42079 * 353.29048 * 13 11 2 15 15 N 1.34289 * 107.40010 * 180.02562 * 14 13 11 16 16 C 1.46494 * 125.74736 * 180.02562 * 15 14 13 17 17 N 1.39934 * 108.50055 * 0.02562 * 15 14 13 18 18 C 1.30448 * 108.91364 * 359.71163 * 17 15 14 19 19 C 1.50696 * 125.98624 * 180.28506 * 18 17 15 20 20 C 1.52998 * 109.47062 * 60.19190 * 19 18 17 21 21 C 1.52999 * 109.46966 * 180.02562 * 20 19 18 22 22 C 1.52996 * 109.47417 * 59.99591 * 21 20 19 23 23 C 1.52998 * 109.47386 * 300.00151 * 22 21 20 24 24 C 1.52996 * 109.47328 * 300.18777 * 19 18 17 25 25 H 1.08995 * 109.46997 * 359.83814 * 1 2 3 26 26 H 1.09002 * 109.46721 * 119.83531 * 1 2 3 27 27 H 1.08993 * 109.46831 * 239.83567 * 1 2 3 28 28 H 0.96996 * 119.99947 * 180.02562 * 6 5 3 29 29 H 1.07994 * 126.29665 * 359.97438 * 14 13 11 30 30 H 1.09000 * 109.47874 * 90.00042 * 16 15 14 31 31 H 1.09002 * 109.47138 * 209.99956 * 16 15 14 32 32 H 1.08996 * 109.47497 * 329.99431 * 16 15 14 33 33 H 1.09002 * 109.46972 * 180.18740 * 19 18 17 34 34 H 1.09002 * 109.46860 * 299.99619 * 20 19 18 35 35 H 1.09003 * 109.47567 * 59.99707 * 20 19 18 36 36 H 1.09002 * 109.46979 * 299.99495 * 21 20 19 37 37 H 1.09001 * 109.47057 * 179.97438 * 21 20 19 38 38 H 1.09005 * 109.47268 * 179.97438 * 22 21 20 39 39 H 1.09002 * 109.47124 * 59.99993 * 22 21 20 40 40 H 1.09002 * 109.46860 * 300.00004 * 23 22 21 41 41 H 1.09003 * 109.47567 * 179.97438 * 23 22 21 42 42 H 1.09001 * 109.47333 * 300.00294 * 24 19 18 43 43 H 1.09002 * 109.47124 * 60.00056 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1499 1.1863 0.0000 4 1 2.9835 1.3286 0.6718 5 6 1.7757 2.2048 -0.8683 6 7 2.3233 3.3945 -0.7607 7 14 0.4942 1.8826 -2.1887 8 1 -0.8636 2.0661 -1.6161 9 1 0.6905 2.8341 -3.3118 10 1 0.6369 0.4913 -2.6880 11 6 2.1390 -1.1671 -0.0005 12 8 1.5351 -2.2180 0.1012 13 6 3.6074 -1.1700 -0.1242 14 6 4.4112 -0.0754 -0.3753 15 7 5.6815 -0.5097 -0.4107 16 6 6.8638 0.3216 -0.6494 17 7 5.6853 -1.8901 -0.1811 18 6 4.4573 -2.2926 -0.0036 19 6 4.0211 -3.7074 0.2775 20 6 4.6656 -4.1909 1.5781 21 6 4.2233 -5.6276 1.8632 22 6 4.6594 -6.5338 0.7102 23 6 4.0149 -6.0503 -0.5905 24 6 4.4568 -4.6140 -0.8754 25 1 -0.3633 1.0276 0.0029 26 1 -0.3633 -0.5113 -0.8915 27 1 -0.3633 -0.5164 0.8885 28 1 2.0618 4.1054 -1.3665 29 1 4.0793 0.9423 -0.5179 30 1 7.2428 0.6961 0.3015 31 1 7.6345 -0.2745 -1.1382 32 1 6.5942 1.1618 -1.2893 33 1 2.9360 -3.7404 0.3756 34 1 5.7507 -4.1580 1.4800 35 1 4.3553 -3.5451 2.3995 36 1 3.1382 -5.6610 1.9611 37 1 4.6828 -5.9722 2.7895 38 1 4.3447 -7.5574 0.9135 39 1 5.7445 -6.5004 0.6123 40 1 2.9298 -6.0837 -0.4925 41 1 4.3260 -6.6957 -1.4120 42 1 3.9976 -4.2696 -1.8020 43 1 5.5419 -4.5811 -0.9735 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263725052.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:49 Heat of formation + Delta-G solvation = 14.275687 kcal Electronic energy + Delta-G solvation = -24363.497719 eV Core-core repulsion = 21023.253550 eV Total energy + Delta-G solvation = -3340.244169 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.32445 -40.04162 -39.22866 -36.78725 -34.51453 -33.94677 -31.92000 -31.61578 -31.08879 -28.28861 -27.53931 -26.62803 -23.84867 -23.41512 -22.86155 -21.36645 -20.56990 -20.17564 -19.30224 -17.76623 -17.07378 -16.60615 -16.46321 -16.31175 -15.92690 -15.69870 -15.09374 -15.06272 -15.02602 -14.57839 -14.18043 -14.09061 -14.03465 -13.66285 -13.50168 -13.37656 -13.06298 -12.96321 -12.93085 -12.66806 -12.23169 -12.04256 -11.99051 -11.93289 -11.79430 -11.37899 -11.07083 -11.05865 -10.97936 -10.38992 -10.09147 -9.68423 -9.36220 -8.49395 -6.24425 0.78999 1.20411 1.29791 1.38545 1.44712 1.64849 2.20040 2.58483 2.78501 3.01862 3.52700 3.74989 3.93863 3.95604 4.19418 4.31932 4.36848 4.42315 4.43265 4.45123 4.55457 4.63742 4.64870 4.66458 4.68291 4.68457 4.78357 4.80581 4.88057 4.92093 5.06344 5.14605 5.29502 5.29717 5.32980 5.40910 5.46680 5.47435 5.61310 5.74939 6.01687 6.13794 6.26657 6.75732 6.95551 7.42828 7.82460 8.60685 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018508 B = 0.005607 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.467948 B = 4992.364970 C = 5925.649387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.486 5.486 3 C -0.339 4.339 4 H 0.090 0.910 5 C 0.039 3.961 6 N -0.894 5.894 7 Si 0.929 3.071 8 H -0.253 1.253 9 H -0.284 1.284 10 H -0.278 1.278 11 C 0.555 3.445 12 O -0.614 6.614 13 C -0.307 4.307 14 C 0.115 3.885 15 N -0.375 5.375 16 C 0.093 3.907 17 N -0.320 5.320 18 C 0.120 3.880 19 C -0.017 4.017 20 C -0.099 4.099 21 C -0.115 4.115 22 C -0.113 4.113 23 C -0.115 4.115 24 C -0.098 4.098 25 H 0.078 0.922 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.282 0.718 29 H 0.212 0.788 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.042 0.958 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.041 0.959 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.757 -9.885 -0.005 11.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.207 5.207 3 C -0.467 4.467 4 H 0.107 0.893 5 C -0.166 4.166 6 N -0.531 5.531 7 Si 0.754 3.246 8 H -0.177 1.177 9 H -0.210 1.210 10 H -0.204 1.204 11 C 0.347 3.653 12 O -0.501 6.501 13 C -0.321 4.321 14 C -0.036 4.036 15 N -0.153 5.153 16 C -0.046 4.046 17 N -0.142 5.142 18 C -0.048 4.048 19 C -0.037 4.037 20 C -0.137 4.137 21 C -0.152 4.152 22 C -0.150 4.150 23 C -0.152 4.152 24 C -0.136 4.136 25 H 0.097 0.903 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.228 0.772 30 H 0.107 0.893 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.060 0.940 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.834 -10.383 -0.098 13.007 hybrid contribution -1.577 1.108 -0.600 2.018 sum 6.257 -9.276 -0.699 11.211 Atomic orbital electron populations 1.21874 0.81870 1.01960 1.01269 1.43565 1.04959 1.05297 1.66876 1.19011 1.17022 0.89888 1.20774 0.89279 1.25878 0.98419 0.94627 0.97717 1.69695 1.43219 1.02081 1.38081 0.86130 0.80900 0.77877 0.79668 1.17712 1.21009 1.20361 1.17808 0.86541 0.82991 0.77968 1.90506 1.70558 1.32085 1.56963 1.20260 0.94201 0.94172 1.23460 1.24799 0.83366 1.01547 0.93894 1.48794 1.07108 1.05993 1.53442 1.22227 0.84486 0.93946 1.03976 1.76820 1.20367 0.90714 1.26255 1.22596 0.89364 0.96629 0.96237 1.19922 1.01548 0.85545 0.96710 1.21444 1.00105 0.97150 0.94982 1.21525 1.01049 0.93424 0.99219 1.21518 1.00709 0.99129 0.93635 1.21516 1.00508 0.94514 0.98682 1.21420 1.00745 0.95362 0.96091 0.90310 0.93512 0.91952 0.90768 0.77179 0.89256 0.87851 0.87823 0.89276 0.91706 0.93904 0.92483 0.90287 0.90144 0.91425 0.92520 0.90340 0.94019 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 3.17 7.90 127.77 1.01 4.17 16 2 N -0.49 -23.86 2.50 -662.70 -1.66 -25.52 16 3 C -0.34 -16.97 6.73 84.07 0.57 -16.40 16 4 H 0.09 4.71 6.27 -2.91 -0.02 4.69 16 5 C 0.04 1.92 5.32 84.93 0.45 2.37 16 6 N -0.89 -45.40 13.96 21.67 0.30 -45.10 16 7 Si 0.93 40.28 24.62 68.60 1.69 41.97 16 8 H -0.25 -10.15 6.66 99.48 0.66 -9.48 16 9 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 10 H -0.28 -12.81 6.99 99.48 0.70 -12.11 16 11 C 0.55 27.93 7.62 86.64 0.66 28.59 16 12 O -0.61 -32.14 14.61 -4.13 -0.06 -32.20 16 13 C -0.31 -14.22 6.01 -20.15 -0.12 -14.35 16 14 C 0.11 4.85 9.65 84.29 0.81 5.66 16 15 N -0.37 -13.53 3.98 -367.72 -1.46 -14.99 16 16 C 0.09 2.23 11.44 127.77 1.46 3.69 16 17 N -0.32 -12.39 12.50 -46.66 -0.58 -12.97 16 18 C 0.12 4.97 5.77 43.52 0.25 5.22 16 19 C -0.02 -0.61 2.53 -11.54 -0.03 -0.64 16 20 C -0.10 -3.03 5.19 30.59 0.16 -2.87 16 21 C -0.11 -2.75 5.92 30.59 0.18 -2.57 16 22 C -0.11 -2.33 5.92 30.59 0.18 -2.15 16 23 C -0.11 -2.78 5.92 30.58 0.18 -2.60 16 24 C -0.10 -3.03 5.18 30.58 0.16 -2.87 16 25 H 0.08 3.27 5.37 -2.39 -0.01 3.25 16 26 H 0.05 1.98 7.38 -2.39 -0.02 1.96 16 27 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.28 13.45 8.31 -92.71 -0.77 12.68 16 29 H 0.21 9.37 4.98 -2.91 -0.01 9.35 16 30 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.09 3.76 5.64 -2.39 -0.01 3.75 16 34 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 41 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -62.03 335.96 5.10 -56.94 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: 0.95 Total: 26.62 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 5.92 Total: 5.25 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -3.40 Total: -98.57 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.06 Total: -32.20 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 1.69 Total: 41.97 kcal Total: -62.03 5.10 -56.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263725052.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.213 kcal (2) G-P(sol) polarization free energy of solvation -62.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds