Wall clock time and date at job start Tue Mar 31 2020 06:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46496 * 109.47224 * 2 1 4 4 C 1.46505 * 119.99619 * 90.00069 * 3 2 1 5 5 C 1.50703 * 109.47064 * 90.00051 * 4 3 2 6 6 C 1.38650 * 120.78792 * 269.71459 * 5 4 3 7 7 C 1.38207 * 119.16129 * 179.79528 * 6 5 4 8 8 N 1.31868 * 120.76474 * 0.49389 * 7 6 5 9 9 C 1.31874 * 121.72157 * 359.73831 * 8 7 6 10 10 C 1.38199 * 120.77057 * 0.02562 * 9 8 7 11 11 C 1.34774 * 120.00119 * 269.99893 * 3 2 1 12 12 O 1.21595 * 119.99524 * 179.97438 * 11 3 2 13 13 N 1.34764 * 120.00259 * 0.02562 * 11 3 2 14 14 C 1.46497 * 120.00171 * 179.97438 * 13 11 3 15 15 C 1.53010 * 109.47226 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.46857 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.46838 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00209 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00211 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00185 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 119.99735 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47361 * 89.99730 * 21 19 17 23 23 H 1.48504 * 109.47139 * 210.00034 * 21 19 17 24 24 H 1.48502 * 109.47472 * 329.99758 * 21 19 17 25 25 H 1.08994 * 109.46887 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46832 * 299.99655 * 1 2 3 27 27 H 1.08997 * 109.46824 * 59.99917 * 1 2 3 28 28 H 1.09006 * 109.46834 * 239.99836 * 2 1 3 29 29 H 1.09003 * 109.46788 * 120.00523 * 2 1 3 30 30 H 1.09002 * 109.47068 * 210.00020 * 4 3 2 31 31 H 1.09001 * 109.47372 * 330.00108 * 4 3 2 32 32 H 1.07998 * 120.42060 * 0.02562 * 6 5 4 33 33 H 1.07997 * 119.61581 * 180.20726 * 7 6 5 34 34 H 1.07998 * 119.61429 * 180.02562 * 9 8 7 35 35 H 1.07997 * 120.42263 * 179.97438 * 10 9 8 36 36 H 0.97005 * 119.99940 * 0.02562 * 13 11 3 37 37 H 1.08998 * 109.47502 * 299.99708 * 14 13 11 38 38 H 1.09000 * 109.47147 * 60.00011 * 14 13 11 39 39 H 1.08998 * 109.46769 * 300.00313 * 15 14 13 40 40 H 1.09000 * 109.46921 * 60.00029 * 15 14 13 41 41 H 1.09002 * 109.47146 * 299.99591 * 16 15 14 42 42 H 1.09000 * 109.47396 * 60.00241 * 16 15 14 43 43 H 0.97002 * 120.00232 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.6859 1.8348 1.7038 6 6 4.0114 0.7540 2.5090 7 6 5.3282 0.5664 2.8845 8 7 6.2671 1.4059 2.4940 9 6 5.9933 2.4469 1.7321 10 6 4.7001 2.6959 1.3133 11 6 2.2431 2.0165 -1.1672 12 8 2.6480 3.1631 -1.1670 13 7 2.0180 1.3815 -2.3343 14 6 2.2617 2.0723 -3.6030 15 6 1.9304 1.1349 -4.7660 16 6 2.1855 1.8562 -6.0910 17 6 1.8586 0.9331 -7.2365 18 1 1.5039 -0.0678 -7.0392 19 6 2.0113 1.3666 -8.5364 20 7 1.7265 0.5610 -9.5360 21 14 2.6241 3.0979 -8.8776 22 1 4.1062 3.0895 -8.9688 23 1 2.0520 3.5818 -10.1598 24 1 2.2011 3.9990 -7.7756 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.0956 3.1410 1.1385 31 1 1.5818 1.6876 2.0285 32 1 3.2462 0.0654 2.8356 33 1 5.5904 -0.2749 3.5088 34 1 6.7890 3.1125 1.4318 35 1 4.4821 3.5503 0.6897 36 1 1.6939 0.4672 -2.3344 37 1 1.6315 2.9597 -3.6604 38 1 3.3096 2.3664 -3.6611 39 1 2.5609 0.2476 -4.7084 40 1 0.8825 0.8403 -4.7081 41 1 1.5552 2.7436 -6.1487 42 1 3.2335 2.1504 -6.1486 43 1 1.8336 0.8661 -10.4505 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264028299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:34 Heat of formation + Delta-G solvation = -2.901327 kcal Electronic energy + Delta-G solvation = -22700.012133 eV Core-core repulsion = 19359.023113 eV Total energy + Delta-G solvation = -3340.989020 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.72753 -39.86006 -36.52539 -35.52352 -33.83445 -32.98893 -31.42147 -31.34715 -30.60987 -27.80383 -26.31462 -23.95332 -23.44223 -22.98924 -22.08811 -20.61968 -19.58488 -18.16781 -17.02663 -16.85829 -16.51757 -16.39084 -15.87337 -15.55620 -14.83312 -14.42463 -14.24362 -14.17819 -13.98251 -13.85257 -13.75421 -13.22885 -12.91796 -12.70242 -12.57132 -12.16727 -11.97523 -11.90590 -11.61875 -11.49352 -11.05935 -10.90208 -10.32577 -10.06935 -9.95149 -9.81714 -9.77950 -9.66285 -9.36059 -9.23926 -9.08200 -8.65510 -8.56393 -6.07314 -4.06068 0.89869 0.95629 2.62130 3.19911 3.30899 3.38431 3.42759 3.62876 3.91548 4.24055 4.37786 4.43732 4.45580 4.56369 4.82526 4.85027 4.94680 4.99107 5.08090 5.26920 5.32274 5.41522 5.43788 5.47996 5.52015 5.60591 5.66906 5.74363 5.87642 6.01593 6.07132 6.24369 6.36513 6.44750 6.48643 6.65374 6.79985 6.86670 7.21918 7.35412 7.74465 7.74547 7.94349 8.48941 8.60662 8.96371 9.54994 11.05939 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020715 B = 0.002995 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.373649 B = 9345.664925 C =10017.977734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.105 3.895 3 N -0.628 5.628 4 C 0.172 3.828 5 C -0.062 4.062 6 C -0.163 4.163 7 C 0.091 3.909 8 N -0.486 5.486 9 C 0.094 3.906 10 C -0.144 4.144 11 C 0.705 3.295 12 O -0.589 6.589 13 N -0.740 5.740 14 C 0.132 3.868 15 C -0.113 4.113 16 C -0.010 4.010 17 C -0.522 4.522 18 H 0.072 0.928 19 C 0.067 3.933 20 N -0.903 5.903 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.264 1.264 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.132 0.868 33 H 0.153 0.847 34 H 0.155 0.845 35 H 0.142 0.858 36 H 0.395 0.605 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.019 0.981 42 H 0.014 0.986 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.557 -0.770 27.025 27.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.018 4.018 3 N -0.365 5.365 4 C 0.049 3.951 5 C -0.072 4.072 6 C -0.183 4.183 7 C -0.066 4.066 8 N -0.195 5.195 9 C -0.062 4.062 10 C -0.165 4.165 11 C 0.406 3.594 12 O -0.467 6.467 13 N -0.395 5.395 14 C 0.008 3.992 15 C -0.151 4.151 16 C -0.048 4.048 17 C -0.560 4.560 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.542 5.542 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.189 1.189 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.150 0.850 33 H 0.171 0.829 34 H 0.172 0.828 35 H 0.160 0.840 36 H 0.230 0.770 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.037 0.963 42 H 0.033 0.967 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.697 -0.065 27.042 27.095 hybrid contribution -0.711 0.388 -0.661 1.045 sum 0.987 0.323 26.380 26.401 Atomic orbital electron populations 1.22244 0.95527 1.02540 1.02931 1.21524 0.94611 0.82512 1.03199 1.47155 1.70531 1.14420 1.04432 1.20165 0.90822 0.99569 0.84565 1.20769 0.97157 0.94267 0.94988 1.22036 0.98225 0.98345 0.99716 1.22724 0.88948 0.97518 0.97382 1.67667 1.37126 1.03692 1.11043 1.22811 0.95733 0.94267 0.93395 1.22277 0.93542 1.00935 0.99714 1.15930 0.78567 0.84514 0.80395 1.90889 1.52947 1.16684 1.86224 1.45489 1.71374 1.17578 1.05051 1.21530 1.01081 0.95904 0.80642 1.21704 1.01201 0.98127 0.94032 1.19495 0.96528 0.96545 0.92264 1.21094 1.44811 1.00663 0.89438 0.91034 1.25025 0.94832 0.97380 0.96230 1.69909 1.49175 1.36097 0.99040 0.86776 0.79343 0.85370 0.77819 1.20231 1.21376 1.18863 0.91244 0.92215 0.91946 0.90560 0.90246 0.88453 0.89430 0.85049 0.82933 0.82757 0.83992 0.76970 0.91903 0.91995 0.92236 0.92159 0.96278 0.96725 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.24 37.16 0.38 -0.76 16 2 C 0.10 0.77 5.89 -4.04 -0.02 0.74 16 3 N -0.63 -6.46 2.46 -180.79 -0.44 -6.90 16 4 C 0.17 1.53 5.58 -5.19 -0.03 1.50 16 5 C -0.06 -0.60 5.50 -104.32 -0.57 -1.17 16 6 C -0.16 -1.31 9.82 -39.44 -0.39 -1.70 16 7 C 0.09 0.83 11.18 -17.55 -0.20 0.63 16 8 N -0.49 -5.54 10.36 -13.25 -0.14 -5.68 16 9 C 0.09 1.02 11.18 -17.55 -0.20 0.82 16 10 C -0.14 -1.58 9.82 -39.44 -0.39 -1.97 16 11 C 0.70 10.08 8.28 -86.93 -0.72 9.36 16 12 O -0.59 -10.42 15.58 5.28 0.08 -10.34 16 13 N -0.74 -10.27 5.42 -65.23 -0.35 -10.63 16 14 C 0.13 2.19 5.67 -4.04 -0.02 2.17 16 15 C -0.11 -2.09 5.27 -26.73 -0.14 -2.23 16 16 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 17 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 18 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.90 -27.72 13.96 55.43 0.77 -26.94 16 21 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.57 6.36 -51.93 -0.33 0.24 16 29 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16 30 H 0.10 0.99 7.38 -51.93 -0.38 0.61 16 31 H 0.09 0.52 8.03 -51.93 -0.42 0.11 16 32 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.14 1.66 7.71 -52.49 -0.40 1.26 16 36 H 0.39 4.56 6.20 -40.82 -0.25 4.31 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 42 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 43 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 LS Contribution 359.60 15.07 5.42 5.42 Total: -1.00 -34.17 359.60 -8.96 -43.13 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -6.79 Total: 1.01 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -2.84 Total: -6.12 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: -0.16 Total: -50.15 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.08 Total: -10.34 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.17 -8.96 -43.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264028299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.228 kcal (2) G-P(sol) polarization free energy of solvation -34.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds