Wall clock time and date at job start Tue Mar 31 2020 07:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 110.99768 * 2 1 4 4 C 1.46903 * 110.99896 * 123.95327 * 2 1 3 5 5 C 1.52998 * 109.47019 * 66.04968 * 4 2 1 6 6 N 1.46501 * 109.47438 * 179.97438 * 5 4 2 7 7 C 1.46496 * 119.99968 * 270.00474 * 6 5 4 8 8 C 1.34774 * 119.99761 * 89.99273 * 6 5 4 9 9 O 1.21587 * 120.00278 * 0.02562 * 8 6 5 10 10 N 1.34781 * 120.00069 * 180.02562 * 8 6 5 11 11 C 1.39232 * 120.00239 * 185.18688 * 10 8 6 12 12 C 1.39481 * 119.83475 * 324.05410 * 11 10 8 13 13 C 1.36376 * 120.16991 * 180.25767 * 12 11 10 14 14 C 1.40869 * 119.82790 * 359.49645 * 13 12 11 15 15 C 1.41161 * 120.16220 * 180.23294 * 14 13 12 16 16 H 1.07998 * 119.99851 * 204.99764 * 15 14 13 17 17 C 1.39893 * 119.99953 * 25.00136 * 15 14 13 18 18 N 1.30872 * 120.00102 * 17.68586 * 17 15 14 19 19 Si 1.86794 * 119.99618 * 197.68290 * 17 15 14 20 20 H 1.48507 * 109.46967 * 94.98310 * 19 17 15 21 21 H 1.48505 * 109.47436 * 214.98006 * 19 17 15 22 22 H 1.48501 * 109.47709 * 334.98092 * 19 17 15 23 23 C 1.40862 * 119.66944 * 0.51962 * 14 13 12 24 24 C 1.36377 * 119.83298 * 359.73462 * 23 14 13 25 25 H 1.09001 * 109.47362 * 296.03869 * 1 2 3 26 26 H 1.08997 * 109.47349 * 56.04689 * 1 2 3 27 27 H 1.08998 * 109.46790 * 176.04565 * 1 2 3 28 28 H 1.08996 * 109.46920 * 183.95262 * 3 2 1 29 29 H 1.08995 * 109.47427 * 303.95475 * 3 2 1 30 30 H 1.09004 * 109.46669 * 63.95522 * 3 2 1 31 31 H 1.08999 * 109.47431 * 306.04877 * 4 2 1 32 32 H 1.08998 * 109.46585 * 186.04674 * 4 2 1 33 33 H 1.09006 * 109.47498 * 59.99689 * 5 4 2 34 34 H 1.09005 * 109.46939 * 299.99965 * 5 4 2 35 35 H 1.08999 * 109.46915 * 269.99110 * 7 6 5 36 36 H 1.08996 * 109.47548 * 29.99154 * 7 6 5 37 37 H 1.08998 * 109.47114 * 149.99751 * 7 6 5 38 38 H 0.96996 * 119.99321 * 5.19074 * 10 8 6 39 39 H 1.08000 * 119.91738 * 359.97206 * 12 11 10 40 40 H 1.08003 * 120.08437 * 179.74426 * 13 12 11 41 41 H 0.97000 * 120.00383 * 180.02562 * 18 17 15 42 42 H 1.08006 * 120.08282 * 179.71065 * 23 14 13 43 43 H 1.07998 * 119.91776 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9703 6 7 2.1570 -3.0067 2.1045 7 6 3.5020 -3.5836 2.0388 8 6 1.4031 -3.1786 3.2084 9 8 0.2868 -2.6999 3.2628 10 7 1.8867 -3.8811 4.2520 11 6 1.0708 -4.1509 5.3475 12 6 0.1402 -3.2018 5.7702 13 6 -0.6587 -3.4569 6.8456 14 6 -0.5497 -4.6869 7.5234 15 6 -1.3766 -4.9603 8.6344 16 1 -1.0568 -5.6688 9.3841 17 6 -2.6101 -4.3134 8.7641 18 7 -3.1584 -3.7354 7.7258 19 14 -3.4748 -4.2748 10.4194 20 1 -3.1384 -3.0116 11.1242 21 1 -4.9435 -4.3502 10.2127 22 1 -3.0301 -5.4316 11.2375 23 6 0.3928 -5.6402 7.0909 24 6 1.1885 -5.3688 6.0171 25 1 -0.3634 0.4511 0.9234 26 1 -0.3634 0.5739 -0.8524 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0827 1.3432 -0.0708 29 1 1.5898 1.9163 -0.8524 30 1 1.7043 1.8723 0.9234 31 1 1.5611 -0.3873 2.0628 32 1 3.0797 -0.6610 1.1756 33 1 2.0659 -2.6214 0.0451 34 1 0.5472 -2.3475 0.9322 35 1 3.4459 -4.5893 1.6221 36 1 4.1334 -2.9620 1.4041 37 1 3.9272 -3.6291 3.0414 38 1 2.8031 -4.1986 4.2399 39 1 0.0553 -2.2607 5.2473 40 1 -1.3760 -2.7193 7.1742 41 1 -4.0136 -3.2866 7.8158 42 1 0.4853 -6.5836 7.6086 43 1 1.9118 -6.0986 5.6845 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266973500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:59 Heat of formation + Delta-G solvation = 11.965432 kcal Electronic energy + Delta-G solvation = -23007.909659 eV Core-core repulsion = 19667.565309 eV Total energy + Delta-G solvation = -3340.344349 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.10724 -37.95344 -37.18225 -35.20172 -34.44146 -32.90427 -30.08791 -29.41883 -28.68065 -27.68949 -26.65453 -25.16638 -23.82954 -21.53985 -21.21561 -20.64178 -19.19338 -17.92338 -17.26303 -16.59047 -15.97303 -15.50413 -15.38588 -15.07299 -14.69242 -14.25810 -13.87292 -13.84083 -13.38704 -13.11934 -12.87992 -12.63762 -12.49745 -12.42489 -12.02674 -11.99399 -11.86449 -11.77501 -11.66046 -11.41868 -11.10725 -10.89510 -10.85240 -10.46195 -9.94034 -9.83846 -9.46416 -9.15094 -8.66805 -8.61416 -8.44337 -7.46428 -6.95169 -6.68907 -4.24216 2.69827 2.91156 3.10316 3.11685 3.14182 3.20362 3.68598 3.94488 3.97233 4.38479 4.69084 4.85939 4.99780 5.03328 5.05445 5.26531 5.35517 5.40275 5.49776 5.55538 5.58267 5.65185 5.74002 5.78519 5.86569 6.01048 6.19323 6.44515 6.49042 6.82322 6.85322 6.88194 6.97638 7.10499 7.15287 7.33836 7.36685 7.67462 7.86881 8.06335 8.11479 8.31621 8.50001 8.68920 8.93737 8.97581 9.16718 10.23999 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.021633 B = 0.003374 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.015508 B = 8296.446465 C = 9327.712213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.546 5.546 3 C 0.025 3.975 4 C 0.038 3.962 5 C 0.139 3.861 6 N -0.639 5.639 7 C 0.082 3.918 8 C 0.695 3.305 9 O -0.572 6.572 10 N -0.666 5.666 11 C 0.010 3.990 12 C -0.085 4.085 13 C -0.157 4.157 14 C 0.105 3.895 15 C -0.461 4.461 16 H 0.078 0.922 17 C 0.074 3.926 18 N -0.789 5.789 19 Si 0.908 3.092 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.216 4.216 24 C -0.106 4.106 25 H 0.030 0.970 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.025 0.975 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.390 0.610 39 H 0.106 0.894 40 H 0.118 0.882 41 H 0.280 0.720 42 H 0.095 0.905 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.904 5.088 -12.278 17.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.270 5.270 3 C -0.123 4.123 4 C -0.092 4.092 5 C 0.015 3.985 6 N -0.379 5.379 7 C -0.062 4.062 8 C 0.397 3.603 9 O -0.449 6.449 10 N -0.314 5.314 11 C -0.083 4.083 12 C -0.105 4.105 13 C -0.177 4.177 14 C 0.103 3.897 15 C -0.491 4.491 16 H 0.096 0.904 17 C -0.144 4.144 18 N -0.414 5.414 19 Si 0.732 3.268 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.186 1.186 23 C -0.236 4.236 24 C -0.126 4.126 25 H 0.049 0.951 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.225 0.775 39 H 0.124 0.876 40 H 0.136 0.864 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.013 5.315 -12.763 17.071 hybrid contribution -0.192 0.242 1.354 1.389 sum 9.821 5.557 -11.409 16.047 Atomic orbital electron populations 1.22465 0.86981 1.02837 1.00585 1.61976 1.08462 1.13722 1.42860 1.22366 1.00531 0.88883 1.00546 1.22543 0.99909 0.94650 0.92056 1.21181 1.00842 0.89222 0.87234 1.47026 1.16594 1.57730 1.16516 1.21674 0.83643 0.98630 1.02228 1.16000 0.84092 0.80439 0.79788 1.90920 1.19026 1.53847 1.81065 1.42231 1.14516 1.57584 1.17049 1.17005 1.01800 0.96615 0.92871 1.20563 0.96113 0.97679 0.96171 1.20993 1.01116 0.97849 0.97707 1.17661 0.90265 0.90271 0.91554 1.19540 1.01029 1.21819 1.06667 0.90433 1.25926 0.97416 0.93346 0.97672 1.69871 1.15640 1.26139 1.29762 0.86314 0.78349 0.79704 0.82409 1.19389 1.20335 1.18610 1.20527 1.03311 0.99312 1.00462 1.20031 1.00582 0.93727 0.98293 0.95141 0.91547 0.90792 0.91514 0.91362 0.95603 0.93957 0.91053 0.90150 0.89653 0.92756 0.91083 0.91675 0.77534 0.87590 0.86377 0.90868 0.88692 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.32 60.07 0.56 0.78 16 2 N -0.55 -6.03 5.02 -251.26 -1.26 -7.29 16 3 C 0.03 0.23 9.57 60.06 0.57 0.80 16 4 C 0.04 0.46 5.28 -3.82 -0.02 0.43 16 5 C 0.14 1.76 5.33 -4.04 -0.02 1.74 16 6 N -0.64 -8.88 2.87 -187.35 -0.54 -9.41 16 7 C 0.08 0.77 10.25 59.84 0.61 1.38 16 8 C 0.69 13.15 8.11 -86.92 -0.71 12.45 16 9 O -0.57 -13.37 13.36 5.29 0.07 -13.30 16 10 N -0.67 -12.36 5.18 -14.10 -0.07 -12.43 16 11 C 0.01 0.22 6.30 -83.57 -0.53 -0.30 16 12 C -0.09 -2.19 8.61 -39.79 -0.34 -2.53 16 13 C -0.16 -4.29 8.64 -39.26 -0.34 -4.63 16 14 C 0.11 2.87 5.57 -106.80 -0.59 2.27 16 15 C -0.46 -12.42 9.03 -37.85 -0.34 -12.76 16 16 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 17 C 0.07 1.91 5.13 -17.34 -0.09 1.83 16 18 N -0.79 -21.19 10.97 55.54 0.61 -20.58 16 19 Si 0.91 19.01 29.59 -169.99 -5.03 13.98 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 22 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 23 C -0.22 -5.33 9.74 -39.26 -0.38 -5.71 16 24 C -0.11 -2.37 9.90 -39.79 -0.39 -2.77 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 27 H 0.07 0.85 6.47 -51.93 -0.34 0.51 16 28 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 29 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 30 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.04 0.63 8.12 -51.93 -0.42 0.21 16 32 H 0.07 0.76 8.06 -51.93 -0.42 0.34 16 33 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 34 H 0.09 1.27 5.83 -51.93 -0.30 0.97 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 37 H 0.06 0.56 6.29 -51.93 -0.33 0.24 16 38 H 0.39 5.69 6.51 -40.82 -0.27 5.42 16 39 H 0.11 2.77 6.24 -52.49 -0.33 2.44 16 40 H 0.12 3.36 6.18 -52.48 -0.32 3.03 16 41 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 42 H 0.09 2.18 8.06 -52.48 -0.42 1.75 16 43 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 350.07 15.07 5.28 5.28 Total: -1.00 -31.77 350.07 -9.45 -41.21 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.49 Total: 9.57 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -2.01 Total: -7.02 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: -1.26 Total: -49.71 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.07 Total: -13.30 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.77 -9.45 -41.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266973500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.178 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds