Wall clock time and date at job start Tue Mar 31 2020 07:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 110.99768 * 2 1 4 4 C 1.46903 * 110.99896 * 123.95327 * 2 1 3 5 5 C 1.52998 * 109.47019 * 66.04968 * 4 2 1 6 6 N 1.46501 * 109.47438 * 179.97438 * 5 4 2 7 7 C 1.46496 * 119.99968 * 270.00474 * 6 5 4 8 8 C 1.34774 * 119.99761 * 89.99273 * 6 5 4 9 9 O 1.21587 * 120.00278 * 0.02562 * 8 6 5 10 10 N 1.34781 * 120.00069 * 180.02562 * 8 6 5 11 11 C 1.39232 * 120.00239 * 185.18688 * 10 8 6 12 12 C 1.39481 * 119.83475 * 324.05410 * 11 10 8 13 13 C 1.36376 * 120.16991 * 180.25767 * 12 11 10 14 14 C 1.40869 * 119.82790 * 359.49645 * 13 12 11 15 15 C 1.41161 * 120.16220 * 180.23294 * 14 13 12 16 16 H 1.07998 * 119.99851 * 204.99764 * 15 14 13 17 17 C 1.39893 * 119.99953 * 25.00136 * 15 14 13 18 18 N 1.30872 * 120.00102 * 17.68586 * 17 15 14 19 19 Si 1.86794 * 119.99618 * 197.68290 * 17 15 14 20 20 H 1.48507 * 109.46967 * 94.98310 * 19 17 15 21 21 H 1.48505 * 109.47436 * 214.98006 * 19 17 15 22 22 H 1.48501 * 109.47709 * 334.98092 * 19 17 15 23 23 C 1.40862 * 119.66944 * 0.51962 * 14 13 12 24 24 C 1.36377 * 119.83298 * 359.73462 * 23 14 13 25 25 H 1.09001 * 109.47362 * 296.03869 * 1 2 3 26 26 H 1.08997 * 109.47349 * 56.04689 * 1 2 3 27 27 H 1.08998 * 109.46790 * 176.04565 * 1 2 3 28 28 H 1.08996 * 109.46920 * 183.95262 * 3 2 1 29 29 H 1.08995 * 109.47427 * 303.95475 * 3 2 1 30 30 H 1.09004 * 109.46669 * 63.95522 * 3 2 1 31 31 H 1.08999 * 109.47431 * 306.04877 * 4 2 1 32 32 H 1.08998 * 109.46585 * 186.04674 * 4 2 1 33 33 H 1.09006 * 109.47498 * 59.99689 * 5 4 2 34 34 H 1.09005 * 109.46939 * 299.99965 * 5 4 2 35 35 H 1.08999 * 109.46915 * 269.99110 * 7 6 5 36 36 H 1.08996 * 109.47548 * 29.99154 * 7 6 5 37 37 H 1.08998 * 109.47114 * 149.99751 * 7 6 5 38 38 H 0.96996 * 119.99321 * 5.19074 * 10 8 6 39 39 H 1.08000 * 119.91738 * 359.97206 * 12 11 10 40 40 H 1.08003 * 120.08437 * 179.74426 * 13 12 11 41 41 H 0.97000 * 120.00383 * 180.02562 * 18 17 15 42 42 H 1.08006 * 120.08282 * 179.71065 * 23 14 13 43 43 H 1.07998 * 119.91776 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9703 6 7 2.1570 -3.0067 2.1045 7 6 3.5020 -3.5836 2.0388 8 6 1.4031 -3.1786 3.2084 9 8 0.2868 -2.6999 3.2628 10 7 1.8867 -3.8811 4.2520 11 6 1.0708 -4.1509 5.3475 12 6 0.1402 -3.2018 5.7702 13 6 -0.6587 -3.4569 6.8456 14 6 -0.5497 -4.6869 7.5234 15 6 -1.3766 -4.9603 8.6344 16 1 -1.0568 -5.6688 9.3841 17 6 -2.6101 -4.3134 8.7641 18 7 -3.1584 -3.7354 7.7258 19 14 -3.4748 -4.2748 10.4194 20 1 -3.1384 -3.0116 11.1242 21 1 -4.9435 -4.3502 10.2127 22 1 -3.0301 -5.4316 11.2375 23 6 0.3928 -5.6402 7.0909 24 6 1.1885 -5.3688 6.0171 25 1 -0.3634 0.4511 0.9234 26 1 -0.3634 0.5739 -0.8524 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0827 1.3432 -0.0708 29 1 1.5898 1.9163 -0.8524 30 1 1.7043 1.8723 0.9234 31 1 1.5611 -0.3873 2.0628 32 1 3.0797 -0.6610 1.1756 33 1 2.0659 -2.6214 0.0451 34 1 0.5472 -2.3475 0.9322 35 1 3.4459 -4.5893 1.6221 36 1 4.1334 -2.9620 1.4041 37 1 3.9272 -3.6291 3.0414 38 1 2.8031 -4.1986 4.2399 39 1 0.0553 -2.2607 5.2473 40 1 -1.3760 -2.7193 7.1742 41 1 -4.0136 -3.2866 7.8158 42 1 0.4853 -6.5836 7.6086 43 1 1.9118 -6.0986 5.6845 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266973500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:58 Heat of formation + Delta-G solvation = -9.022623 kcal Electronic energy + Delta-G solvation = -23008.819769 eV Core-core repulsion = 19667.565309 eV Total energy + Delta-G solvation = -3341.254460 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.57814 -39.45982 -38.48482 -36.48267 -36.19762 -34.69859 -31.48308 -31.27536 -30.27840 -28.54842 -27.67032 -26.80591 -25.09737 -23.19530 -22.82301 -22.04228 -20.70258 -19.33702 -19.17930 -18.06557 -17.18008 -17.11605 -16.47465 -16.40130 -15.83896 -15.77166 -15.52038 -15.00460 -14.80737 -14.51105 -14.21458 -14.08145 -13.93511 -13.67014 -13.39581 -13.36789 -13.16437 -12.87916 -12.78612 -12.65861 -12.64532 -12.54672 -12.28959 -11.87731 -11.72639 -11.71606 -11.26509 -10.96651 -10.48463 -9.75263 -9.45692 -9.43319 -8.83354 -8.59866 -6.25492 0.87198 1.15500 1.37846 1.47648 1.52857 1.67626 2.16342 2.21618 2.76564 2.92899 3.20950 3.75369 3.89045 4.07643 4.21719 4.29487 4.39629 4.44147 4.49748 4.50188 4.57450 4.62270 4.71371 4.77467 4.88975 4.92055 4.96869 4.98069 5.02982 5.10886 5.18373 5.30940 5.43527 5.52814 5.67170 5.78867 5.93892 5.98175 6.07227 6.12492 6.15852 6.36587 6.70060 6.93970 7.03170 7.04526 7.65589 8.34801 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.021633 B = 0.003374 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.015508 B = 8296.446465 C = 9327.712213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.544 5.544 3 C 0.023 3.977 4 C 0.047 3.953 5 C 0.140 3.860 6 N -0.628 5.628 7 C 0.073 3.927 8 C 0.688 3.312 9 O -0.626 6.626 10 N -0.657 5.657 11 C 0.024 3.976 12 C -0.100 4.100 13 C -0.181 4.181 14 C 0.073 3.927 15 C -0.495 4.495 16 H 0.083 0.917 17 C 0.029 3.971 18 N -0.830 5.830 19 Si 0.986 3.014 20 H -0.264 1.264 21 H -0.271 1.271 22 H -0.252 1.252 23 C -0.222 4.222 24 C -0.099 4.099 25 H 0.008 0.992 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.015 0.985 31 H 0.004 0.996 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.413 0.587 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.286 0.714 42 H 0.112 0.888 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.344 4.158 -13.392 19.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.268 5.268 3 C -0.125 4.125 4 C -0.082 4.082 5 C 0.016 3.984 6 N -0.366 5.366 7 C -0.069 4.069 8 C 0.390 3.610 9 O -0.506 6.506 10 N -0.307 5.307 11 C -0.070 4.070 12 C -0.120 4.120 13 C -0.201 4.201 14 C 0.070 3.930 15 C -0.524 4.524 16 H 0.101 0.899 17 C -0.185 4.185 18 N -0.456 5.456 19 Si 0.806 3.194 20 H -0.189 1.189 21 H -0.195 1.195 22 H -0.176 1.176 23 C -0.242 4.242 24 C -0.119 4.119 25 H 0.027 0.973 26 H 0.106 0.894 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.033 0.967 31 H 0.022 0.978 32 H 0.111 0.889 33 H 0.132 0.868 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.120 0.880 37 H 0.093 0.907 38 H 0.252 0.748 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.096 0.904 42 H 0.130 0.870 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 12.543 4.373 -13.931 19.249 hybrid contribution -0.810 0.559 1.496 1.790 sum 11.733 4.932 -12.435 17.794 Atomic orbital electron populations 1.22465 0.87399 1.02506 1.00407 1.62042 1.08125 1.14857 1.41801 1.22469 1.01571 0.87722 1.00718 1.22436 1.00830 0.94209 0.90774 1.21284 0.99492 0.89768 0.87864 1.47054 1.17768 1.56935 1.14825 1.22046 0.81155 0.99934 1.03780 1.16262 0.83925 0.79935 0.80885 1.90897 1.21737 1.55745 1.82218 1.41987 1.15153 1.57651 1.15871 1.17054 1.00760 0.95917 0.93315 1.20566 0.97363 0.98123 0.95979 1.20871 1.01922 0.98133 0.99194 1.18000 0.91750 0.90790 0.92421 1.19827 1.01999 1.23266 1.07307 0.89929 1.26873 0.97825 0.92331 1.01475 1.69958 1.16353 1.27177 1.32141 0.85142 0.77151 0.79969 0.77114 1.18900 1.19534 1.17555 1.20824 1.02871 0.99413 1.01134 1.20384 1.00527 0.94019 0.96947 0.97310 0.89369 0.91636 0.89893 0.89769 0.96663 0.97804 0.88860 0.86829 0.92599 0.91041 0.88005 0.90749 0.74814 0.89091 0.88843 0.90377 0.86986 0.84756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.32 127.69 1.19 1.65 16 2 N -0.54 -11.36 5.02 -948.86 -4.76 -16.12 16 3 C 0.02 0.38 9.57 127.69 1.22 1.61 16 4 C 0.05 1.09 5.28 86.30 0.46 1.55 16 5 C 0.14 3.35 5.33 86.38 0.46 3.81 16 6 N -0.63 -16.24 2.87 -864.92 -2.49 -18.73 16 7 C 0.07 1.06 10.25 127.77 1.31 2.37 16 8 C 0.69 25.81 8.11 179.05 1.45 27.26 16 9 O -0.63 -30.44 13.36 -3.99 -0.05 -30.49 16 10 N -0.66 -23.34 5.18 -316.78 -1.64 -24.99 16 11 C 0.02 1.07 6.30 38.57 0.24 1.32 16 12 C -0.10 -5.36 8.61 22.13 0.19 -5.17 16 13 C -0.18 -10.48 8.64 22.48 0.19 -10.29 16 14 C 0.07 4.11 5.57 -21.28 -0.12 3.99 16 15 C -0.49 -27.42 9.03 23.39 0.21 -27.21 16 16 H 0.08 4.32 7.90 -2.91 -0.02 4.29 16 17 C 0.03 1.54 5.13 85.24 0.44 1.98 16 18 N -0.83 -46.71 10.97 21.82 0.24 -46.47 16 19 Si 0.99 39.72 29.59 68.60 2.03 41.75 16 20 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 21 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 22 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 23 C -0.22 -10.89 9.74 22.48 0.22 -10.67 16 24 C -0.10 -4.23 9.90 22.14 0.22 -4.02 16 25 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 26 H 0.09 1.54 8.12 -2.39 -0.02 1.53 16 27 H 0.06 1.56 6.47 -2.39 -0.02 1.54 16 28 H 0.08 1.11 8.12 -2.39 -0.02 1.09 16 29 H 0.08 1.13 8.12 -2.39 -0.02 1.11 16 30 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 31 H 0.00 0.11 8.12 -2.39 -0.02 0.09 16 32 H 0.09 1.74 8.06 -2.39 -0.02 1.72 16 33 H 0.11 2.01 8.07 -2.38 -0.02 1.99 16 34 H 0.06 1.70 5.83 -2.38 -0.01 1.69 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.10 0.93 8.07 -2.39 -0.02 0.91 16 37 H 0.07 0.97 6.29 -2.39 -0.02 0.96 16 38 H 0.41 10.71 6.51 -92.71 -0.60 10.11 16 39 H 0.09 5.08 6.24 -2.91 -0.02 5.06 16 40 H 0.09 5.74 6.18 -2.91 -0.02 5.73 16 41 H 0.29 14.63 8.30 -92.71 -0.77 13.86 16 42 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 43 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -74.16 350.07 1.42 -72.74 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: 0.40 Total: 34.14 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: 7.69 Total: -11.83 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -8.65 Total: -106.30 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.05 Total: -30.49 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -74.16 1.42 -72.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266973500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.720 kcal (2) G-P(sol) polarization free energy of solvation -74.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds