Wall clock time and date at job start Tue Mar 31 2020 06:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47507 * 2 1 4 4 C 1.46490 * 120.00060 * 270.00611 * 3 2 1 5 5 C 1.34781 * 119.99481 * 89.99770 * 3 2 1 6 6 O 1.21282 * 119.99994 * 0.02562 * 5 3 2 7 7 C 1.50699 * 119.99822 * 179.97438 * 5 3 2 8 8 N 1.46893 * 109.47434 * 180.02562 * 7 5 3 9 9 C 1.46901 * 111.00186 * 66.04745 * 8 7 5 10 10 C 1.50693 * 109.47511 * 193.95938 * 9 8 7 11 11 H 1.08004 * 119.99737 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00289 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00270 * 179.97438 * 12 10 9 14 14 Si 1.86808 * 119.99980 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47156 * 89.99701 * 14 12 10 16 16 H 1.48500 * 109.47179 * 209.99972 * 14 12 10 17 17 H 1.48503 * 109.46933 * 329.99997 * 14 12 10 18 18 C 1.46900 * 111.00186 * 190.00613 * 8 7 5 19 19 C 1.50703 * 109.47016 * 170.00348 * 18 8 7 20 20 C 1.38223 * 119.62264 * 95.01930 * 19 18 8 21 21 C 1.38628 * 119.16031 * 179.97438 * 20 19 18 22 22 C 1.38672 * 118.42475 * 359.97438 * 21 20 19 23 23 C 1.38186 * 119.15778 * 0.02562 * 22 21 20 24 24 N 1.31856 * 119.61279 * 274.99401 * 19 18 8 25 25 H 1.08997 * 109.47814 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46851 * 299.99680 * 1 2 3 27 27 H 1.09003 * 109.47369 * 59.99478 * 1 2 3 28 28 H 1.09005 * 109.46851 * 240.00320 * 2 1 3 29 29 H 1.08998 * 109.46905 * 120.00507 * 2 1 3 30 30 H 1.09001 * 109.46990 * 269.99166 * 4 3 2 31 31 H 1.08997 * 109.47540 * 29.99637 * 4 3 2 32 32 H 1.08998 * 109.47297 * 150.00250 * 4 3 2 33 33 H 1.09002 * 109.46779 * 60.00504 * 7 5 3 34 34 H 1.09000 * 109.47503 * 300.01159 * 7 5 3 35 35 H 1.09001 * 109.46809 * 313.96000 * 9 8 7 36 36 H 1.09002 * 109.47034 * 73.95355 * 9 8 7 37 37 H 0.97002 * 120.00216 * 179.97438 * 13 12 10 38 38 H 1.08989 * 109.47527 * 49.99888 * 18 8 7 39 39 H 1.08996 * 109.46581 * 289.99458 * 18 8 7 40 40 H 1.07995 * 120.41821 * 359.95030 * 20 19 18 41 41 H 1.08006 * 120.78822 * 180.02562 * 21 20 19 42 42 H 1.07993 * 120.42192 * 179.97438 * 22 21 20 43 43 H 1.08001 * 119.60956 * 180.27218 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 2.2430 2.0164 1.1673 6 8 2.0412 1.4445 2.2176 7 6 2.7460 3.4370 1.1674 8 7 2.9096 3.8985 2.5523 9 6 3.9746 3.1507 3.2340 10 6 3.8899 3.3965 4.7184 11 1 3.1220 4.0438 5.1156 12 6 4.7933 2.7958 5.5693 13 7 4.7197 3.0107 6.8647 14 14 6.1219 1.6767 4.8821 15 1 7.3307 2.4794 4.5663 16 1 6.4651 0.6400 5.8884 17 1 5.6261 1.0212 3.6453 18 6 3.1686 5.3438 2.5986 19 6 3.0870 5.8233 4.0249 20 6 4.2411 5.9246 4.7787 21 6 4.1550 6.3673 6.0896 22 6 2.9057 6.6936 6.5954 23 6 1.7959 6.5669 5.7819 24 7 1.9154 6.1419 4.5392 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8932 -0.5139 0.8899 30 1 3.2919 1.9006 -1.5833 31 1 1.5816 1.6878 -2.0283 32 1 2.0956 3.1410 -1.1383 33 1 2.0283 4.0765 0.6534 34 1 3.7062 3.4826 0.6536 35 1 3.8555 2.0857 3.0347 36 1 4.9450 3.4831 2.8655 37 1 5.3551 2.5878 7.4633 38 1 2.4247 5.8656 1.9967 39 1 4.1637 5.5473 2.2033 40 1 5.1977 5.6618 4.3520 41 1 5.0401 6.4568 6.7022 42 1 2.8014 7.0414 7.6125 43 1 0.8200 6.8232 6.1670 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267346870.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:08 Heat of formation + Delta-G solvation = 34.865059 kcal Electronic energy + Delta-G solvation = -24225.106965 eV Core-core repulsion = 20885.755618 eV Total energy + Delta-G solvation = -3339.351347 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.78389 -39.21207 -36.47579 -35.30273 -32.54322 -31.68534 -31.24912 -30.66965 -28.39038 -27.11872 -26.51811 -24.28332 -22.66448 -22.42456 -21.56339 -20.09611 -18.77536 -16.98452 -16.83369 -16.05745 -15.76785 -15.45311 -15.26290 -14.66353 -14.38068 -14.34945 -13.70730 -13.42395 -13.33212 -12.91356 -12.76512 -12.66999 -12.59149 -12.30720 -12.23001 -12.00671 -11.87422 -11.77375 -11.38744 -11.25292 -10.98069 -10.74797 -10.52212 -10.21709 -9.80709 -9.40985 -9.08933 -8.77352 -8.49821 -8.45644 -8.40670 -7.60099 -7.41088 -5.96239 -3.84626 2.16665 2.45744 3.08114 3.14470 3.28759 3.38571 3.43989 4.47717 4.51852 4.82873 5.02993 5.09537 5.19264 5.20796 5.23840 5.36143 5.41217 5.43927 5.52301 5.59822 5.64745 5.71166 5.76274 5.81144 5.97013 6.00783 6.04583 6.15317 6.22506 6.36559 6.63141 6.66308 6.72915 6.83400 6.96196 7.17621 7.30520 7.49912 7.72529 7.77561 7.88652 8.00187 8.63310 8.74039 9.05914 9.15555 9.63578 11.13680 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015070 B = 0.005883 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.492568 B = 4758.336125 C = 5837.572030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.113 3.887 3 N -0.631 5.631 4 C 0.082 3.918 5 C 0.509 3.491 6 O -0.493 6.493 7 C 0.040 3.960 8 N -0.504 5.504 9 C 0.153 3.847 10 C -0.487 4.487 11 H 0.097 0.903 12 C 0.070 3.930 13 N -0.887 5.887 14 Si 0.863 3.137 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.269 1.269 18 C 0.120 3.880 19 C 0.151 3.849 20 C -0.081 4.081 21 C -0.077 4.077 22 C -0.168 4.168 23 C 0.067 3.933 24 N -0.479 5.479 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.051 0.949 35 H 0.047 0.953 36 H -0.023 1.023 37 H 0.260 0.740 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.683 2.570 -14.614 15.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.009 4.009 3 N -0.369 5.369 4 C -0.062 4.062 5 C 0.296 3.704 6 O -0.364 6.364 7 C -0.091 4.091 8 N -0.229 5.229 9 C 0.028 3.972 10 C -0.525 4.525 11 H 0.114 0.886 12 C -0.131 4.131 13 N -0.526 5.526 14 Si 0.691 3.309 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.193 1.193 18 C -0.008 4.008 19 C 0.011 3.989 20 C -0.102 4.102 21 C -0.103 4.103 22 C -0.188 4.188 23 C -0.089 4.089 24 N -0.189 5.189 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.069 0.931 35 H 0.065 0.935 36 H -0.005 1.005 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.891 2.038 -14.089 14.758 hybrid contribution 2.339 -0.801 -0.081 2.474 sum -1.552 1.237 -14.170 14.308 Atomic orbital electron populations 1.22120 0.96171 1.01841 1.02321 1.21319 0.94232 0.82666 1.02724 1.47982 1.68357 1.14310 1.06271 1.21713 1.00838 0.97862 0.85749 1.20749 0.77873 0.88734 0.83050 1.90780 1.48478 1.66865 1.30310 1.21921 1.00241 0.93587 0.93363 1.61697 1.48504 1.02247 1.10426 1.20451 0.85800 0.95102 0.95882 1.21396 1.14711 1.27880 0.88538 0.88574 1.24803 0.97499 0.96098 0.94726 1.69895 1.36788 1.43849 1.02077 0.87033 0.82625 0.81750 0.79465 1.20666 1.21318 1.19340 1.20720 0.98846 0.88734 0.92519 1.20395 0.88422 0.94463 0.95639 1.21472 0.99223 0.94678 0.94779 1.21071 0.97257 0.97096 0.94863 1.21778 0.94140 1.02907 0.99960 1.22214 0.97735 0.98779 0.90155 1.67249 1.26756 1.11052 1.13865 0.91967 0.91913 0.92941 0.91179 0.89952 0.92987 0.91446 0.91022 0.88774 0.93108 0.93485 1.00511 0.92982 0.90722 0.94416 0.86426 0.86552 0.86687 0.84597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 10.24 37.16 0.38 -1.50 16 2 C 0.11 1.40 6.13 -4.04 -0.02 1.38 16 3 N -0.63 -8.62 2.87 -181.58 -0.52 -9.15 16 4 C 0.08 0.73 10.24 59.84 0.61 1.35 16 5 C 0.51 9.31 7.26 -10.98 -0.08 9.23 16 6 O -0.49 -11.65 14.03 5.56 0.08 -11.58 16 7 C 0.04 0.68 4.00 -4.98 -0.02 0.66 16 8 N -0.50 -10.87 4.30 -238.98 -1.03 -11.90 16 9 C 0.15 3.81 3.33 -4.98 -0.02 3.79 16 10 C -0.49 -13.68 6.33 -34.44 -0.22 -13.89 16 11 H 0.10 2.94 5.17 -52.48 -0.27 2.66 16 12 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 13 N -0.89 -26.39 13.96 55.43 0.77 -25.61 16 14 Si 0.86 21.88 27.47 -169.99 -4.67 17.21 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 17 H -0.27 -6.84 6.54 56.52 0.37 -6.47 16 18 C 0.12 2.30 5.28 -4.97 -0.03 2.27 16 19 C 0.15 3.26 4.01 -82.59 -0.33 2.93 16 20 C -0.08 -1.75 6.31 -39.44 -0.25 -2.00 16 21 C -0.08 -1.61 10.10 -39.28 -0.40 -2.01 16 22 C -0.17 -3.31 10.11 -39.44 -0.40 -3.71 16 23 C 0.07 1.34 11.18 -17.55 -0.20 1.15 16 24 N -0.48 -10.58 10.16 -9.47 -0.10 -10.68 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 29 H 0.08 1.23 7.42 -51.93 -0.39 0.84 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.46 8.07 -51.93 -0.42 0.05 16 32 H 0.07 0.57 6.44 -51.93 -0.33 0.24 16 33 H 0.09 1.29 7.19 -51.93 -0.37 0.91 16 34 H 0.05 0.75 8.09 -51.93 -0.42 0.33 16 35 H 0.05 1.28 4.85 -51.93 -0.25 1.03 16 36 H -0.02 -0.54 7.41 -51.93 -0.38 -0.93 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.07 1.26 7.93 -51.93 -0.41 0.84 16 39 H 0.04 0.65 7.91 -51.93 -0.41 0.24 16 40 H 0.12 2.50 7.99 -52.49 -0.42 2.08 16 41 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 42 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 43 H 0.14 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 345.11 15.07 5.20 5.20 Total: -1.00 -35.22 345.11 -7.95 -43.17 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.63 Total: 1.75 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -1.06 Total: 1.57 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: -0.87 Total: -57.33 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.08 Total: -11.58 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.22 -7.95 -43.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267346870.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.035 kcal (2) G-P(sol) polarization free energy of solvation -35.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds