Wall clock time and date at job start Tue Mar 31 2020 06:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47507 * 2 1 4 4 C 1.46490 * 120.00060 * 270.00611 * 3 2 1 5 5 C 1.34781 * 119.99481 * 89.99770 * 3 2 1 6 6 O 1.21282 * 119.99994 * 0.02562 * 5 3 2 7 7 C 1.50699 * 119.99822 * 179.97438 * 5 3 2 8 8 N 1.46893 * 109.47434 * 180.02562 * 7 5 3 9 9 C 1.46901 * 111.00186 * 66.04745 * 8 7 5 10 10 C 1.50693 * 109.47511 * 193.95938 * 9 8 7 11 11 H 1.08004 * 119.99737 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00289 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00270 * 179.97438 * 12 10 9 14 14 Si 1.86808 * 119.99980 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47156 * 89.99701 * 14 12 10 16 16 H 1.48500 * 109.47179 * 209.99972 * 14 12 10 17 17 H 1.48503 * 109.46933 * 329.99997 * 14 12 10 18 18 C 1.46900 * 111.00186 * 190.00613 * 8 7 5 19 19 C 1.50703 * 109.47016 * 170.00348 * 18 8 7 20 20 C 1.38223 * 119.62264 * 95.01930 * 19 18 8 21 21 C 1.38628 * 119.16031 * 179.97438 * 20 19 18 22 22 C 1.38672 * 118.42475 * 359.97438 * 21 20 19 23 23 C 1.38186 * 119.15778 * 0.02562 * 22 21 20 24 24 N 1.31856 * 119.61279 * 274.99401 * 19 18 8 25 25 H 1.08997 * 109.47814 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46851 * 299.99680 * 1 2 3 27 27 H 1.09003 * 109.47369 * 59.99478 * 1 2 3 28 28 H 1.09005 * 109.46851 * 240.00320 * 2 1 3 29 29 H 1.08998 * 109.46905 * 120.00507 * 2 1 3 30 30 H 1.09001 * 109.46990 * 269.99166 * 4 3 2 31 31 H 1.08997 * 109.47540 * 29.99637 * 4 3 2 32 32 H 1.08998 * 109.47297 * 150.00250 * 4 3 2 33 33 H 1.09002 * 109.46779 * 60.00504 * 7 5 3 34 34 H 1.09000 * 109.47503 * 300.01159 * 7 5 3 35 35 H 1.09001 * 109.46809 * 313.96000 * 9 8 7 36 36 H 1.09002 * 109.47034 * 73.95355 * 9 8 7 37 37 H 0.97002 * 120.00216 * 179.97438 * 13 12 10 38 38 H 1.08989 * 109.47527 * 49.99888 * 18 8 7 39 39 H 1.08996 * 109.46581 * 289.99458 * 18 8 7 40 40 H 1.07995 * 120.41821 * 359.95030 * 20 19 18 41 41 H 1.08006 * 120.78822 * 180.02562 * 21 20 19 42 42 H 1.07993 * 120.42192 * 179.97438 * 22 21 20 43 43 H 1.08001 * 119.60956 * 180.27218 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 2.2430 2.0164 1.1673 6 8 2.0412 1.4445 2.2176 7 6 2.7460 3.4370 1.1674 8 7 2.9096 3.8985 2.5523 9 6 3.9746 3.1507 3.2340 10 6 3.8899 3.3965 4.7184 11 1 3.1220 4.0438 5.1156 12 6 4.7933 2.7958 5.5693 13 7 4.7197 3.0107 6.8647 14 14 6.1219 1.6767 4.8821 15 1 7.3307 2.4794 4.5663 16 1 6.4651 0.6400 5.8884 17 1 5.6261 1.0212 3.6453 18 6 3.1686 5.3438 2.5986 19 6 3.0870 5.8233 4.0249 20 6 4.2411 5.9246 4.7787 21 6 4.1550 6.3673 6.0896 22 6 2.9057 6.6936 6.5954 23 6 1.7959 6.5669 5.7819 24 7 1.9154 6.1419 4.5392 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8932 -0.5139 0.8899 30 1 3.2919 1.9006 -1.5833 31 1 1.5816 1.6878 -2.0283 32 1 2.0956 3.1410 -1.1383 33 1 2.0283 4.0765 0.6534 34 1 3.7062 3.4826 0.6536 35 1 3.8555 2.0857 3.0347 36 1 4.9450 3.4831 2.8655 37 1 5.3551 2.5878 7.4633 38 1 2.4247 5.8656 1.9967 39 1 4.1637 5.5473 2.2033 40 1 5.1977 5.6618 4.3520 41 1 5.0401 6.4568 6.7022 42 1 2.8014 7.0414 7.6125 43 1 0.8200 6.8232 6.1670 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267346870.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:08 Heat of formation + Delta-G solvation = 9.182710 kcal Electronic energy + Delta-G solvation = -24226.220635 eV Core-core repulsion = 20885.755618 eV Total energy + Delta-G solvation = -3340.465017 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.21774 -40.68693 -37.95477 -36.61721 -34.59376 -33.08148 -32.73668 -32.03329 -30.22053 -28.54886 -27.41148 -25.84777 -24.05925 -24.02245 -23.17888 -21.72676 -20.00865 -18.96963 -18.15511 -17.39340 -17.22354 -16.90693 -16.68864 -16.25452 -16.11503 -15.87250 -15.13479 -14.83170 -14.64902 -14.56433 -14.25177 -14.00089 -13.87743 -13.74885 -13.54548 -13.38407 -13.15120 -13.05847 -12.81428 -12.70680 -12.59123 -12.19679 -11.98192 -11.94883 -11.77188 -11.36288 -10.74686 -10.59219 -10.27721 -10.05428 -9.58910 -9.30419 -8.97968 -8.12141 -6.03414 0.56984 0.81736 1.26859 1.33518 1.41768 1.75833 2.06748 2.38948 3.01175 3.21003 3.51633 3.70726 3.73551 4.12032 4.18224 4.25851 4.28174 4.31863 4.39839 4.40967 4.49334 4.54612 4.56579 4.61842 4.75088 4.78826 4.84258 4.90966 4.98324 5.03289 5.06336 5.09287 5.18671 5.29114 5.55181 5.67358 5.69567 5.72888 6.01591 6.17989 6.30859 6.50346 6.71854 6.94641 7.37973 7.44227 7.47976 8.99737 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015070 B = 0.005883 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.492568 B = 4758.336125 C = 5837.572030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.108 3.892 3 N -0.623 5.623 4 C 0.072 3.928 5 C 0.499 3.501 6 O -0.564 6.564 7 C 0.042 3.958 8 N -0.531 5.531 9 C 0.169 3.831 10 C -0.484 4.484 11 H 0.067 0.933 12 C 0.022 3.978 13 N -0.925 5.925 14 Si 0.917 3.083 15 H -0.262 1.262 16 H -0.292 1.292 17 H -0.273 1.273 18 C 0.120 3.880 19 C 0.138 3.862 20 C -0.097 4.097 21 C -0.087 4.087 22 C -0.174 4.174 23 C 0.059 3.941 24 N -0.500 5.500 25 H 0.078 0.922 26 H 0.025 0.975 27 H 0.075 0.925 28 H 0.109 0.891 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.130 0.870 34 H 0.079 0.921 35 H 0.022 0.978 36 H -0.015 1.015 37 H 0.258 0.742 38 H 0.100 0.900 39 H 0.058 0.942 40 H 0.114 0.886 41 H 0.122 0.878 42 H 0.143 0.857 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.665 3.120 -17.652 18.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.015 4.015 3 N -0.359 5.359 4 C -0.070 4.070 5 C 0.287 3.713 6 O -0.441 6.441 7 C -0.089 4.089 8 N -0.256 5.256 9 C 0.042 3.958 10 C -0.522 4.522 11 H 0.085 0.915 12 C -0.175 4.175 13 N -0.566 5.566 14 Si 0.744 3.256 15 H -0.187 1.187 16 H -0.218 1.218 17 H -0.198 1.198 18 C -0.007 4.007 19 C -0.001 4.001 20 C -0.117 4.117 21 C -0.113 4.113 22 C -0.194 4.194 23 C -0.096 4.096 24 N -0.211 5.211 25 H 0.097 0.903 26 H 0.044 0.956 27 H 0.094 0.906 28 H 0.127 0.873 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.148 0.852 34 H 0.096 0.904 35 H 0.040 0.960 36 H 0.002 0.998 37 H 0.068 0.932 38 H 0.118 0.882 39 H 0.076 0.924 40 H 0.132 0.868 41 H 0.140 0.860 42 H 0.161 0.839 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.869 2.607 -17.222 17.843 hybrid contribution 2.210 -0.916 0.803 2.523 sum -1.659 1.691 -16.419 16.589 Atomic orbital electron populations 1.22044 0.95275 1.02782 1.01500 1.21471 0.94981 0.82209 1.02827 1.48085 1.66432 1.14651 1.06717 1.22081 1.02576 0.98438 0.83856 1.21170 0.77353 0.89378 0.83374 1.90751 1.51932 1.68389 1.33061 1.22063 1.02477 0.93222 0.91128 1.61455 1.47432 1.03184 1.13523 1.20080 0.87201 0.94179 0.94299 1.21517 1.13426 1.26827 0.90445 0.91472 1.25411 0.99632 0.97530 0.94968 1.70018 1.38005 1.45492 1.03108 0.86166 0.80971 0.80127 0.78322 1.18655 1.21795 1.19841 1.20837 1.00884 0.87470 0.91544 1.20827 0.88195 0.94127 0.96974 1.21560 0.99332 0.95548 0.95306 1.21338 0.98196 0.96821 0.94962 1.22107 0.93550 1.02488 1.01264 1.22786 0.99230 0.97731 0.89854 1.67312 1.27095 1.11788 1.14855 0.90282 0.95615 0.90634 0.87310 0.93504 0.91496 0.88651 0.89661 0.85192 0.90359 0.95997 0.99764 0.93238 0.88155 0.92368 0.86772 0.85999 0.83937 0.81776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 10.24 71.98 0.74 -2.61 16 2 C 0.11 2.51 6.13 86.38 0.53 3.04 16 3 N -0.62 -15.69 2.87 -846.79 -2.43 -18.12 16 4 C 0.07 0.98 10.24 127.77 1.31 2.28 16 5 C 0.50 17.89 7.26 87.66 0.64 18.52 16 6 O -0.56 -27.59 14.03 -3.04 -0.04 -27.63 16 7 C 0.04 1.29 4.00 85.56 0.34 1.63 16 8 N -0.53 -22.38 4.30 -909.98 -3.91 -26.29 16 9 C 0.17 8.41 3.33 85.55 0.28 8.69 16 10 C -0.48 -27.65 6.33 25.60 0.16 -27.49 16 11 H 0.07 4.20 5.17 -2.91 -0.02 4.19 16 12 C 0.02 1.31 5.47 84.65 0.46 1.77 16 13 N -0.93 -56.38 13.96 21.45 0.30 -56.08 16 14 Si 0.92 45.82 27.47 68.60 1.88 47.71 16 15 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 16 H -0.29 -14.63 7.11 99.48 0.71 -13.93 16 17 H -0.27 -13.75 6.54 99.48 0.65 -13.10 16 18 C 0.12 4.39 5.28 85.56 0.45 4.84 16 19 C 0.14 5.92 4.01 42.55 0.17 6.09 16 20 C -0.10 -4.22 6.31 22.36 0.14 -4.08 16 21 C -0.09 -3.68 10.10 22.47 0.23 -3.45 16 22 C -0.17 -6.79 10.11 22.36 0.23 -6.56 16 23 C 0.06 2.36 11.18 84.67 0.95 3.31 16 24 N -0.50 -21.87 10.16 -183.88 -1.87 -23.74 16 25 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 26 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.11 1.69 8.07 -2.38 -0.02 1.67 16 29 H 0.05 1.43 7.42 -2.39 -0.02 1.42 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 0.81 8.07 -2.39 -0.02 0.80 16 32 H 0.08 0.95 6.44 -2.39 -0.02 0.94 16 33 H 0.13 3.04 7.19 -2.39 -0.02 3.03 16 34 H 0.08 2.03 8.09 -2.39 -0.02 2.01 16 35 H 0.02 1.22 4.85 -2.39 -0.01 1.20 16 36 H -0.02 -0.71 7.41 -2.39 -0.02 -0.73 16 37 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 38 H 0.10 3.09 7.93 -2.39 -0.02 3.07 16 39 H 0.06 1.86 7.91 -2.39 -0.02 1.85 16 40 H 0.11 4.91 7.99 -2.91 -0.02 4.88 16 41 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 42 H 0.14 4.63 8.06 -2.91 -0.02 4.60 16 43 H 0.17 5.38 8.06 -2.91 -0.02 5.35 16 Total: -1.00 -80.67 345.11 1.49 -79.19 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.93 Total: 18.98 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 6.63 Total: 6.00 kcal Atomic # 7 Polarization: -116.32 SS G_CDS: -7.91 Total: -124.23 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.04 Total: -27.63 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.88 Total: 47.71 kcal Total: -80.67 1.49 -79.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267346870.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.369 kcal (2) G-P(sol) polarization free energy of solvation -80.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds