Wall clock time and date at job start Tue Mar 31 2020 07:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 119.99670 * 2 1 4 4 C 1.34776 * 119.99906 * 179.97438 * 2 1 3 5 5 O 1.21275 * 119.99834 * 0.02562 * 4 2 1 6 6 C 1.50700 * 119.99732 * 180.02562 * 4 2 1 7 7 C 1.52999 * 109.47056 * 180.02562 * 6 4 2 8 8 N 1.46893 * 109.47471 * 179.97438 * 7 6 4 9 9 C 1.46901 * 111.00186 * 66.04501 * 8 7 6 10 10 C 1.50693 * 109.47511 * 193.95938 * 9 8 7 11 11 H 1.08004 * 119.99737 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00289 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99874 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00381 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47027 * 90.00058 * 14 12 10 16 16 H 1.48493 * 109.47555 * 209.99864 * 14 12 10 17 17 H 1.48505 * 109.47201 * 330.00289 * 14 12 10 18 18 C 1.46900 * 111.00186 * 190.00369 * 8 7 6 19 19 C 1.50703 * 109.47016 * 170.00348 * 18 8 7 20 20 C 1.38223 * 119.62264 * 95.01930 * 19 18 8 21 21 C 1.38628 * 119.16031 * 179.97438 * 20 19 18 22 22 C 1.38672 * 118.42475 * 359.97438 * 21 20 19 23 23 C 1.38186 * 119.15778 * 0.02562 * 22 21 20 24 24 N 1.31856 * 119.61279 * 274.99401 * 19 18 8 25 25 H 1.08992 * 109.47300 * 240.00246 * 1 2 3 26 26 H 1.09007 * 109.46726 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46997 * 120.00151 * 1 2 3 28 28 H 1.09003 * 109.47026 * 269.99181 * 3 2 1 29 29 H 1.09001 * 109.47661 * 29.99852 * 3 2 1 30 30 H 1.08999 * 109.46881 * 149.99744 * 3 2 1 31 31 H 1.09002 * 109.47316 * 60.00296 * 6 4 2 32 32 H 1.09000 * 109.46900 * 299.99916 * 6 4 2 33 33 H 1.09002 * 109.46959 * 59.99902 * 7 6 4 34 34 H 1.09000 * 109.47285 * 300.00580 * 7 6 4 35 35 H 1.09001 * 109.46809 * 313.96000 * 9 8 7 36 36 H 1.09002 * 109.47034 * 73.95355 * 9 8 7 37 37 H 0.97002 * 119.99928 * 180.02562 * 13 12 10 38 38 H 1.08989 * 109.47527 * 49.99888 * 18 8 7 39 39 H 1.08996 * 109.46581 * 289.99458 * 18 8 7 40 40 H 1.07995 * 120.41821 * 359.95030 * 20 19 18 41 41 H 1.08006 * 120.78822 * 180.02562 * 21 20 19 42 42 H 1.07993 * 120.42192 * 179.97438 * 22 21 20 43 43 H 1.08001 * 119.60956 * 180.27218 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2174 0.0005 6 6 3.6459 -1.1672 0.0011 7 6 4.1559 -2.6096 0.0010 8 7 5.6249 -2.6097 0.0009 9 6 6.1514 -2.0530 1.2542 10 6 7.6186 -1.7500 1.0921 11 1 8.1109 -1.9513 0.1521 12 6 8.3329 -1.2169 2.1440 13 7 7.7335 -0.9722 3.2889 14 14 10.1518 -0.8420 1.9433 15 1 10.3191 0.5485 1.4494 16 1 10.8348 -0.9872 3.2538 17 1 10.7477 -1.7891 0.9669 18 6 6.1513 -3.9603 -0.2374 19 6 7.6376 -3.8854 -0.4747 20 6 8.5088 -4.0874 0.5793 21 6 9.8742 -4.0168 0.3501 22 6 10.3144 -3.7451 -0.9365 23 6 9.3839 -3.5545 -1.9403 24 7 8.0920 -3.6285 -1.6855 25 1 -0.3633 -0.5138 0.8899 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 2.3792 1.5834 -1.0277 29 1 1.6084 2.0285 0.5138 30 1 3.1499 1.1385 0.5139 31 1 4.0089 -0.6532 0.8911 32 1 4.0095 -0.6535 -0.8889 33 1 3.7929 -3.1233 -0.8893 34 1 3.7922 -3.1237 0.8906 35 1 5.6157 -1.1354 1.4976 36 1 6.0164 -2.7766 2.0582 37 1 8.2359 -0.5967 4.0288 38 1 5.6648 -4.3906 -1.1126 39 1 5.9534 -4.5860 0.6328 40 1 8.1305 -4.2970 1.5688 41 1 10.5784 -4.1707 1.1544 42 1 11.3709 -3.6825 -1.1512 43 1 9.7187 -3.3469 -2.9458 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267464703.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:41 Heat of formation + Delta-G solvation = 21.257672 kcal Electronic energy + Delta-G solvation = -23770.445216 eV Core-core repulsion = 20430.503808 eV Total energy + Delta-G solvation = -3339.941408 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.76339 -39.49295 -36.69298 -35.40842 -32.79972 -32.07686 -31.44262 -29.98300 -27.97495 -27.49205 -26.22422 -24.68087 -22.95157 -22.63989 -21.40265 -19.93205 -18.86969 -17.02928 -16.48548 -16.15418 -15.90409 -15.79676 -15.51759 -14.89674 -14.54799 -14.24504 -14.04695 -13.28037 -13.15398 -13.09731 -12.74085 -12.65092 -12.55260 -12.44739 -12.23564 -12.11684 -12.02929 -11.74497 -11.27196 -11.11190 -10.85800 -10.75915 -10.60788 -10.29376 -9.80689 -9.56968 -9.35265 -8.82501 -8.65977 -8.62021 -8.54433 -7.79488 -7.30933 -6.11544 -4.03976 1.95823 2.18442 2.84372 3.09376 3.25612 3.33983 3.39750 4.33892 4.48059 4.75957 5.07844 5.08860 5.17447 5.25979 5.29643 5.32482 5.48659 5.53110 5.54276 5.59573 5.65957 5.72112 5.75799 5.83464 5.98383 6.10467 6.12328 6.23522 6.39610 6.43499 6.47642 6.53700 6.58240 6.94800 7.02833 7.15021 7.25690 7.39820 7.53692 7.76723 8.00490 8.11087 8.32810 8.47207 8.88011 8.97450 9.52569 10.98111 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017676 B = 0.004740 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.708479 B = 5906.370509 C = 6872.725997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.629 5.629 3 C 0.077 3.923 4 C 0.517 3.483 5 O -0.544 6.544 6 C -0.133 4.133 7 C 0.077 3.923 8 N -0.532 5.532 9 C 0.184 3.816 10 C -0.493 4.493 11 H 0.075 0.925 12 C 0.060 3.940 13 N -0.894 5.894 14 Si 0.872 3.128 15 H -0.283 1.283 16 H -0.290 1.290 17 H -0.251 1.251 18 C 0.119 3.881 19 C 0.162 3.838 20 C -0.086 4.086 21 C -0.100 4.100 22 C -0.177 4.177 23 C 0.067 3.933 24 N -0.478 5.478 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.031 0.969 35 H 0.033 0.967 36 H -0.007 1.007 37 H 0.261 0.739 38 H 0.073 0.927 39 H 0.039 0.961 40 H 0.127 0.873 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.444 0.665 -5.632 7.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.364 5.364 3 C -0.066 4.066 4 C 0.306 3.694 5 O -0.421 6.421 6 C -0.173 4.173 7 C -0.052 4.052 8 N -0.257 5.257 9 C 0.059 3.941 10 C -0.531 4.531 11 H 0.093 0.907 12 C -0.142 4.142 13 N -0.533 5.533 14 Si 0.700 3.300 15 H -0.210 1.210 16 H -0.216 1.216 17 H -0.175 1.175 18 C -0.010 4.010 19 C 0.022 3.978 20 C -0.107 4.107 21 C -0.126 4.126 22 C -0.198 4.198 23 C -0.088 4.088 24 N -0.188 5.188 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.087 0.913 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.011 0.989 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.057 0.943 40 H 0.145 0.855 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.167 0.604 -6.519 8.994 hybrid contribution 1.489 0.224 1.594 2.193 sum -4.678 0.828 -4.925 6.843 Atomic orbital electron populations 1.21557 0.79723 1.01793 1.02101 1.47834 1.06822 1.06805 1.74933 1.21883 0.97880 0.84849 1.02034 1.20998 0.90810 0.82714 0.74898 1.90656 1.70842 1.31061 1.49585 1.21695 0.89567 1.00705 1.05364 1.21643 0.88746 0.94053 1.00777 1.62051 1.04564 1.19567 1.39484 1.19910 0.95683 0.94632 0.83883 1.21516 0.93639 1.39476 0.98511 0.90685 1.24895 0.98336 0.95727 0.95222 1.69962 1.36287 1.44178 1.02908 0.86888 0.85897 0.79437 0.77818 1.20981 1.21572 1.17490 1.20677 0.89980 0.90709 0.99617 1.20636 0.95630 0.93149 0.88381 1.21674 0.93239 0.96306 0.99464 1.21204 0.95776 0.99245 0.96369 1.21820 1.00077 1.03321 0.94555 1.22302 0.88631 0.99227 0.98672 1.67335 1.16095 1.12187 1.23135 0.92379 0.91023 0.92399 0.92484 0.91251 0.90090 0.88030 0.88233 0.91273 0.95046 0.94889 0.98886 0.92968 0.90823 0.94328 0.85501 0.86522 0.86603 0.84334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.97 10.16 59.85 0.61 1.58 16 2 N -0.63 -8.13 3.27 -189.51 -0.62 -8.75 16 3 C 0.08 0.76 10.21 59.85 0.61 1.37 16 4 C 0.52 8.40 7.67 -10.99 -0.08 8.32 16 5 O -0.54 -10.52 15.98 5.56 0.09 -10.43 16 6 C -0.13 -2.21 4.21 -27.88 -0.12 -2.33 16 7 C 0.08 1.43 4.25 -3.83 -0.02 1.41 16 8 N -0.53 -11.17 4.56 -237.53 -1.08 -12.26 16 9 C 0.18 4.44 4.55 -4.98 -0.02 4.42 16 10 C -0.49 -12.67 5.77 -34.44 -0.20 -12.86 16 11 H 0.08 1.97 4.92 -52.48 -0.26 1.71 16 12 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.89 -24.98 13.29 55.43 0.74 -24.24 16 14 Si 0.87 20.39 28.78 -169.99 -4.89 15.50 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.25 -5.51 5.25 56.52 0.30 -5.22 16 18 C 0.12 2.34 5.28 -4.97 -0.03 2.31 16 19 C 0.16 3.34 4.01 -82.59 -0.33 3.01 16 20 C -0.09 -1.75 6.31 -39.44 -0.25 -1.99 16 21 C -0.10 -1.88 7.77 -39.28 -0.31 -2.18 16 22 C -0.18 -3.11 9.88 -39.44 -0.39 -3.50 16 23 C 0.07 1.21 11.18 -17.55 -0.20 1.02 16 24 N -0.48 -9.78 10.16 -9.47 -0.10 -9.88 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.54 7.79 -51.93 -0.40 0.13 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.54 7.92 -51.93 -0.41 0.12 16 30 H 0.08 0.87 6.44 -51.93 -0.33 0.54 16 31 H 0.10 1.76 5.57 -51.93 -0.29 1.47 16 32 H 0.10 1.56 8.11 -51.93 -0.42 1.14 16 33 H 0.07 1.25 7.89 -51.93 -0.41 0.84 16 34 H 0.03 0.62 8.08 -51.93 -0.42 0.20 16 35 H 0.03 0.84 5.98 -51.93 -0.31 0.53 16 36 H -0.01 -0.17 7.99 -51.93 -0.41 -0.59 16 37 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 39 H 0.04 0.73 7.91 -51.93 -0.41 0.32 16 40 H 0.13 2.61 7.99 -52.49 -0.42 2.19 16 41 H 0.12 1.99 8.06 -52.48 -0.42 1.57 16 42 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 43 H 0.14 2.08 8.06 -52.49 -0.42 1.65 16 LS Contribution 343.64 15.07 5.18 5.18 Total: -1.00 -31.44 343.64 -8.19 -39.64 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -6.69 Total: 3.19 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -0.81 Total: 2.06 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -1.06 Total: -55.13 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.89 Total: 15.50 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.44 -8.19 -39.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267464703.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.894 kcal (2) G-P(sol) polarization free energy of solvation -31.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds