Wall clock time and date at job start Tue Mar 31 2020 07:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 119.99670 * 2 1 4 4 C 1.34776 * 119.99906 * 179.97438 * 2 1 3 5 5 O 1.21275 * 119.99834 * 0.02562 * 4 2 1 6 6 C 1.50700 * 119.99732 * 180.02562 * 4 2 1 7 7 C 1.52999 * 109.47056 * 180.02562 * 6 4 2 8 8 N 1.46893 * 109.47471 * 179.97438 * 7 6 4 9 9 C 1.46901 * 111.00186 * 66.04501 * 8 7 6 10 10 C 1.50693 * 109.47511 * 193.95938 * 9 8 7 11 11 H 1.08004 * 119.99737 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00289 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99874 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00381 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47027 * 90.00058 * 14 12 10 16 16 H 1.48493 * 109.47555 * 209.99864 * 14 12 10 17 17 H 1.48505 * 109.47201 * 330.00289 * 14 12 10 18 18 C 1.46900 * 111.00186 * 190.00369 * 8 7 6 19 19 C 1.50703 * 109.47016 * 170.00348 * 18 8 7 20 20 C 1.38223 * 119.62264 * 95.01930 * 19 18 8 21 21 C 1.38628 * 119.16031 * 179.97438 * 20 19 18 22 22 C 1.38672 * 118.42475 * 359.97438 * 21 20 19 23 23 C 1.38186 * 119.15778 * 0.02562 * 22 21 20 24 24 N 1.31856 * 119.61279 * 274.99401 * 19 18 8 25 25 H 1.08992 * 109.47300 * 240.00246 * 1 2 3 26 26 H 1.09007 * 109.46726 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46997 * 120.00151 * 1 2 3 28 28 H 1.09003 * 109.47026 * 269.99181 * 3 2 1 29 29 H 1.09001 * 109.47661 * 29.99852 * 3 2 1 30 30 H 1.08999 * 109.46881 * 149.99744 * 3 2 1 31 31 H 1.09002 * 109.47316 * 60.00296 * 6 4 2 32 32 H 1.09000 * 109.46900 * 299.99916 * 6 4 2 33 33 H 1.09002 * 109.46959 * 59.99902 * 7 6 4 34 34 H 1.09000 * 109.47285 * 300.00580 * 7 6 4 35 35 H 1.09001 * 109.46809 * 313.96000 * 9 8 7 36 36 H 1.09002 * 109.47034 * 73.95355 * 9 8 7 37 37 H 0.97002 * 119.99928 * 180.02562 * 13 12 10 38 38 H 1.08989 * 109.47527 * 49.99888 * 18 8 7 39 39 H 1.08996 * 109.46581 * 289.99458 * 18 8 7 40 40 H 1.07995 * 120.41821 * 359.95030 * 20 19 18 41 41 H 1.08006 * 120.78822 * 180.02562 * 21 20 19 42 42 H 1.07993 * 120.42192 * 179.97438 * 22 21 20 43 43 H 1.08001 * 119.60956 * 180.27218 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2174 0.0005 6 6 3.6459 -1.1672 0.0011 7 6 4.1559 -2.6096 0.0010 8 7 5.6249 -2.6097 0.0009 9 6 6.1514 -2.0530 1.2542 10 6 7.6186 -1.7500 1.0921 11 1 8.1109 -1.9513 0.1521 12 6 8.3329 -1.2169 2.1440 13 7 7.7335 -0.9722 3.2889 14 14 10.1518 -0.8420 1.9433 15 1 10.3191 0.5485 1.4494 16 1 10.8348 -0.9872 3.2538 17 1 10.7477 -1.7891 0.9669 18 6 6.1513 -3.9603 -0.2374 19 6 7.6376 -3.8854 -0.4747 20 6 8.5088 -4.0874 0.5793 21 6 9.8742 -4.0168 0.3501 22 6 10.3144 -3.7451 -0.9365 23 6 9.3839 -3.5545 -1.9403 24 7 8.0920 -3.6285 -1.6855 25 1 -0.3633 -0.5138 0.8899 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 2.3792 1.5834 -1.0277 29 1 1.6084 2.0285 0.5138 30 1 3.1499 1.1385 0.5139 31 1 4.0089 -0.6532 0.8911 32 1 4.0095 -0.6535 -0.8889 33 1 3.7929 -3.1233 -0.8893 34 1 3.7922 -3.1237 0.8906 35 1 5.6157 -1.1354 1.4976 36 1 6.0164 -2.7766 2.0582 37 1 8.2359 -0.5967 4.0288 38 1 5.6648 -4.3906 -1.1126 39 1 5.9534 -4.5860 0.6328 40 1 8.1305 -4.2970 1.5688 41 1 10.5784 -4.1707 1.1544 42 1 11.3709 -3.6825 -1.1512 43 1 9.7187 -3.3469 -2.9458 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267464703.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:41 Heat of formation + Delta-G solvation = -0.103294 kcal Electronic energy + Delta-G solvation = -23771.371497 eV Core-core repulsion = 20430.503808 eV Total energy + Delta-G solvation = -3340.867689 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.18295 -40.84547 -38.30866 -36.55753 -34.73654 -33.53610 -32.98060 -31.41507 -29.50326 -28.81589 -27.39400 -26.14134 -24.71825 -24.11613 -22.87244 -21.56523 -20.11980 -18.73736 -17.96048 -17.57666 -17.21275 -17.01888 -16.97133 -16.50497 -16.16495 -15.78208 -15.52365 -14.84256 -14.63382 -14.47842 -14.06972 -13.93612 -13.88150 -13.75233 -13.51334 -13.45668 -13.36353 -13.04996 -12.97187 -12.64664 -12.48557 -12.46203 -12.18795 -11.96799 -11.55957 -11.27724 -10.91379 -10.56215 -10.34448 -10.10313 -9.70725 -9.37873 -9.05815 -8.13157 -6.10962 0.48428 0.69068 1.40165 1.45519 1.54946 1.56113 2.03826 2.45115 2.96636 3.23535 3.44461 3.62498 3.79933 4.00915 4.06071 4.16498 4.20231 4.31700 4.40981 4.46769 4.49416 4.50426 4.58810 4.63392 4.73352 4.75584 4.88485 4.90454 4.94192 4.98606 5.00343 5.10956 5.24135 5.26915 5.48365 5.52877 5.57409 5.75564 6.06164 6.12947 6.25359 6.33360 6.59602 6.95098 7.10976 7.38470 7.49662 8.97170 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017676 B = 0.004740 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.708479 B = 5906.370509 C = 6872.725997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.624 5.624 3 C 0.071 3.929 4 C 0.514 3.486 5 O -0.583 6.583 6 C -0.123 4.123 7 C 0.080 3.920 8 N -0.533 5.533 9 C 0.200 3.800 10 C -0.488 4.488 11 H 0.074 0.926 12 C 0.015 3.985 13 N -0.932 5.932 14 Si 0.923 3.077 15 H -0.290 1.290 16 H -0.293 1.293 17 H -0.226 1.226 18 C 0.116 3.884 19 C 0.146 3.854 20 C -0.105 4.105 21 C -0.103 4.103 22 C -0.174 4.174 23 C 0.066 3.934 24 N -0.497 5.497 25 H 0.049 0.951 26 H 0.110 0.890 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.015 0.985 35 H 0.018 0.982 36 H -0.037 1.037 37 H 0.259 0.741 38 H 0.087 0.913 39 H 0.037 0.963 40 H 0.110 0.890 41 H 0.134 0.866 42 H 0.153 0.847 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.269 1.602 -7.453 8.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.357 5.357 3 C -0.071 4.071 4 C 0.303 3.697 5 O -0.464 6.464 6 C -0.163 4.163 7 C -0.048 4.048 8 N -0.257 5.257 9 C 0.074 3.926 10 C -0.526 4.526 11 H 0.092 0.908 12 C -0.183 4.183 13 N -0.574 5.574 14 Si 0.749 3.251 15 H -0.217 1.217 16 H -0.219 1.219 17 H -0.149 1.149 18 C -0.012 4.012 19 C 0.007 3.993 20 C -0.126 4.126 21 C -0.129 4.129 22 C -0.194 4.194 23 C -0.090 4.090 24 N -0.207 5.207 25 H 0.067 0.933 26 H 0.129 0.871 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.117 0.883 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.129 0.871 33 H 0.095 0.905 34 H 0.033 0.967 35 H 0.036 0.964 36 H -0.019 1.019 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.055 0.945 40 H 0.128 0.872 41 H 0.151 0.849 42 H 0.171 0.829 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.008 1.562 -8.361 9.870 hybrid contribution 1.117 -0.091 2.071 2.354 sum -3.891 1.471 -6.290 7.541 Atomic orbital electron populations 1.21755 0.78078 1.04171 1.01534 1.47942 1.08045 1.06727 1.72957 1.22110 0.97622 0.83991 1.03402 1.20873 0.90517 0.83324 0.75025 1.90635 1.71304 1.32596 1.51825 1.21540 0.90328 0.99118 1.05303 1.21643 0.87347 0.95567 1.00293 1.62044 1.05821 1.20526 1.37316 1.19605 0.95427 0.93240 0.84358 1.21617 0.94095 1.38667 0.98206 0.90815 1.25549 1.01944 0.95861 0.94922 1.70079 1.37703 1.45857 1.03723 0.86084 0.81805 0.79146 0.78050 1.21725 1.21901 1.14885 1.20747 0.90403 0.89996 1.00090 1.20651 0.95718 0.94100 0.88816 1.21631 0.94362 0.97787 0.98785 1.21532 0.95273 0.98333 0.97785 1.22231 1.01981 1.01664 0.93514 1.22962 0.87909 0.97607 1.00509 1.67356 1.17679 1.12799 1.22907 0.93254 0.87149 0.92729 0.90799 0.88330 0.91325 0.89092 0.87145 0.90498 0.96658 0.96429 1.01910 0.93234 0.89438 0.94492 0.87162 0.84860 0.82890 0.80938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.69 10.16 127.77 1.30 2.99 16 2 N -0.62 -15.39 3.27 -871.88 -2.85 -18.25 16 3 C 0.07 1.26 10.21 127.77 1.30 2.57 16 4 C 0.51 16.80 7.67 87.66 0.67 17.47 16 5 O -0.58 -22.99 15.98 -3.01 -0.05 -23.04 16 6 C -0.12 -4.14 4.21 29.85 0.13 -4.02 16 7 C 0.08 3.07 4.25 86.30 0.37 3.44 16 8 N -0.53 -22.85 4.56 -905.40 -4.13 -26.98 16 9 C 0.20 9.99 4.55 85.55 0.39 10.38 16 10 C -0.49 -25.26 5.77 25.60 0.15 -25.11 16 11 H 0.07 3.83 4.92 -2.91 -0.01 3.81 16 12 C 0.02 0.81 5.46 84.65 0.46 1.27 16 13 N -0.93 -53.33 13.29 21.45 0.28 -53.05 16 14 Si 0.92 41.27 28.78 68.60 1.97 43.24 16 15 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 16 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 17 H -0.23 -9.04 5.25 99.48 0.52 -8.52 16 18 C 0.12 4.64 5.28 85.56 0.45 5.10 16 19 C 0.15 5.96 4.01 42.55 0.17 6.13 16 20 C -0.11 -4.22 6.31 22.36 0.14 -4.08 16 21 C -0.10 -3.64 7.77 22.47 0.17 -3.46 16 22 C -0.17 -5.42 9.88 22.36 0.22 -5.20 16 23 C 0.07 2.16 11.18 84.67 0.95 3.11 16 24 N -0.50 -19.49 10.16 -183.88 -1.87 -21.35 16 25 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.11 1.29 7.79 -2.38 -0.02 1.27 16 27 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.10 1.21 7.92 -2.39 -0.02 1.19 16 30 H 0.07 1.42 6.44 -2.39 -0.02 1.41 16 31 H 0.09 3.27 5.57 -2.39 -0.01 3.26 16 32 H 0.11 3.43 8.11 -2.39 -0.02 3.42 16 33 H 0.08 2.82 7.89 -2.39 -0.02 2.80 16 34 H 0.02 0.63 8.08 -2.39 -0.02 0.61 16 35 H 0.02 0.93 5.98 -2.39 -0.01 0.92 16 36 H -0.04 -2.03 7.99 -2.39 -0.02 -2.05 16 37 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 38 H 0.09 3.20 7.93 -2.39 -0.02 3.18 16 39 H 0.04 1.47 7.91 -2.39 -0.02 1.45 16 40 H 0.11 4.71 7.99 -2.91 -0.02 4.68 16 41 H 0.13 4.18 8.06 -2.91 -0.02 4.15 16 42 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 43 H 0.17 4.39 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -68.64 343.64 1.04 -67.61 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.80 Total: 21.23 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 6.87 Total: 10.59 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -8.57 Total: -119.62 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.05 Total: -23.04 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 1.97 Total: 43.24 kcal Total: -68.64 1.04 -67.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267464703.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.505 kcal (2) G-P(sol) polarization free energy of solvation -68.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds