Wall clock time and date at job start Tue Mar 31 2020 06:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46488 * 109.47401 * 2 1 4 4 C 1.46505 * 120.00118 * 270.00035 * 3 2 1 5 5 C 1.50704 * 109.46947 * 270.00108 * 4 3 2 6 6 H 1.07995 * 119.99791 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99464 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00402 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99586 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47020 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47071 * 119.99922 * 9 7 5 12 12 H 1.48501 * 109.47026 * 240.00064 * 9 7 5 13 13 C 1.34774 * 120.00461 * 90.00295 * 3 2 1 14 14 O 1.21280 * 120.00439 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99570 * 359.97438 * 13 3 2 16 16 N 1.46511 * 109.47065 * 180.02562 * 15 13 3 17 17 C 1.35309 * 126.49215 * 265.02562 * 16 15 13 18 18 N 1.30751 * 108.76019 * 179.97438 * 17 16 15 19 19 C 1.33577 * 109.15485 * 359.97438 * 18 17 16 20 20 C 1.35037 * 107.97280 * 0.05860 * 19 18 17 21 21 C 1.50652 * 124.45237 * 179.82458 * 20 19 18 22 22 C 1.53394 * 108.38343 * 343.59919 * 21 20 19 23 23 C 1.53175 * 109.47545 * 49.63899 * 22 21 20 24 24 C 1.50860 * 128.03893 * 180.02562 * 19 18 17 25 25 H 1.09006 * 109.46810 * 300.00268 * 1 2 3 26 26 H 1.08998 * 109.47125 * 60.00035 * 1 2 3 27 27 H 1.09003 * 109.47450 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46783 * 239.99302 * 2 1 3 29 29 H 1.09007 * 109.46828 * 119.99899 * 2 1 3 30 30 H 1.08996 * 109.47033 * 29.99670 * 4 3 2 31 31 H 1.08998 * 109.47389 * 149.99915 * 4 3 2 32 32 H 0.97001 * 120.00075 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47331 * 60.00489 * 15 13 3 34 34 H 1.08996 * 109.47666 * 299.99958 * 15 13 3 35 35 H 1.07999 * 125.62151 * 359.94756 * 17 16 15 36 36 H 1.08999 * 109.67741 * 103.31857 * 21 20 19 37 37 H 1.08997 * 109.67822 * 223.87616 * 21 20 19 38 38 H 1.09004 * 109.47309 * 169.63185 * 22 21 20 39 39 H 1.08995 * 109.48103 * 289.64709 * 22 21 20 40 40 H 1.08997 * 109.51463 * 169.98766 * 23 22 21 41 41 H 1.09001 * 109.44267 * 49.99800 * 23 22 21 42 42 H 1.09002 * 109.67831 * 283.08903 * 24 19 18 43 43 H 1.09004 * 109.67519 * 43.59033 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8348 -1.7038 6 1 4.3428 1.2306 -1.0958 7 6 4.1491 2.3895 -2.8780 8 7 3.3492 3.1256 -3.6181 9 14 5.9136 2.0964 -3.4169 10 1 6.6015 1.2422 -2.4158 11 1 5.9215 1.4168 -4.7372 12 1 6.6205 3.3978 -3.5258 13 6 2.2431 2.0165 1.1671 14 8 2.6470 3.1600 1.1671 15 6 1.9914 1.3062 2.4723 16 7 2.3084 2.2040 3.5858 17 6 3.4803 2.2682 4.2592 18 7 3.3847 3.1888 5.1828 19 6 2.1673 3.7362 5.1317 20 6 1.4799 3.1316 4.1389 21 6 0.0597 3.4631 3.7611 22 6 -0.5740 4.2567 4.9106 23 6 0.3572 5.4042 5.3133 24 6 1.6044 4.8339 6.0000 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 1.5818 1.6876 -2.0284 31 1 2.0956 3.1409 -1.1385 32 1 3.6751 3.5154 -4.4444 33 1 2.6212 0.4185 2.5302 34 1 0.9433 1.0125 2.5299 35 1 4.3510 1.6592 4.0659 36 1 0.0526 4.0645 2.8521 37 1 -0.5009 2.5428 3.5975 38 1 -1.5322 4.6632 4.5866 39 1 -0.7289 3.5980 5.7650 40 1 -0.1629 6.0711 6.0009 41 1 0.6542 5.9597 4.4237 42 1 1.3338 4.4283 6.9749 43 1 2.3477 5.6215 6.1238 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272080664.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:07 Heat of formation + Delta-G solvation = 12.632173 kcal Electronic energy + Delta-G solvation = -23872.180867 eV Core-core repulsion = 20531.865430 eV Total energy + Delta-G solvation = -3340.315437 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.13622 -39.18194 -36.58256 -35.51795 -34.00362 -32.84860 -30.43108 -30.24985 -28.80109 -28.31147 -26.42655 -23.48405 -23.20252 -22.85063 -21.86969 -20.71707 -18.88347 -18.58705 -17.09132 -16.70565 -16.47774 -15.48004 -15.16004 -14.98565 -14.57294 -14.37791 -14.01535 -13.82611 -13.58092 -13.47077 -13.29577 -12.96375 -12.69670 -12.42856 -12.18060 -12.04150 -11.81684 -11.73273 -11.31478 -11.01347 -10.92033 -10.88662 -10.86668 -10.84022 -10.64792 -10.22288 -9.76360 -9.68953 -9.60265 -8.89394 -8.51656 -7.86760 -7.84020 -6.12678 -4.17935 2.19661 2.86155 3.09698 3.24860 3.33306 3.34992 3.36640 3.76976 4.37774 4.53822 4.69322 4.76680 4.81053 4.84765 4.90421 4.97846 5.18057 5.19367 5.22638 5.38881 5.44050 5.50510 5.57145 5.58251 5.67174 5.76263 5.85078 5.88658 5.95217 6.06430 6.07240 6.26354 6.31353 6.32700 6.61277 6.87591 7.00640 7.30298 7.35322 7.41766 7.82763 8.12444 8.19109 8.33189 8.74054 8.89747 9.47675 10.95558 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018680 B = 0.004282 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.531033 B = 6537.763798 C = 6993.304988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.247 3.753 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.488 3.512 14 O -0.519 6.519 15 C 0.082 3.918 16 N -0.430 5.430 17 C 0.184 3.816 18 N -0.488 5.488 19 C -0.006 4.006 20 C -0.010 4.010 21 C -0.044 4.044 22 C -0.110 4.110 23 C -0.120 4.120 24 C -0.029 4.029 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.034 0.966 31 H 0.043 0.957 32 H 0.264 0.736 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.201 0.799 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.514 -5.204 14.652 18.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.272 3.728 14 O -0.395 6.395 15 C -0.045 4.045 16 N -0.111 5.111 17 C -0.097 4.097 18 N -0.206 5.206 19 C -0.136 4.136 20 C -0.126 4.126 21 C -0.082 4.082 22 C -0.148 4.148 23 C -0.158 4.158 24 C -0.067 4.067 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.135 0.865 34 H 0.129 0.871 35 H 0.218 0.782 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.696 -4.363 14.887 17.784 hybrid contribution 0.556 -0.646 -1.291 1.546 sum -8.140 -5.009 13.596 16.620 Atomic orbital electron populations 1.22235 0.96534 1.01690 1.02396 1.21491 0.93697 0.84025 1.02963 1.48278 1.63426 1.13287 1.07462 1.19317 0.96506 0.93603 0.77708 1.21430 0.96795 1.32192 1.06358 0.92420 1.24932 0.97935 0.94784 0.96352 1.69932 1.35683 1.33280 1.14313 0.86437 0.84486 0.78147 0.78331 1.19786 1.20881 1.20806 1.20318 0.79956 0.87505 0.85024 1.90765 1.44651 1.17484 1.86576 1.21872 1.04279 0.92937 0.85364 1.44576 1.12610 1.28744 1.25160 1.24861 0.90165 1.01439 0.93275 1.69914 1.19398 1.09369 1.21892 1.20334 0.91184 1.01856 1.00181 1.20781 0.95601 0.96600 0.99594 1.20077 0.88636 1.00102 0.99377 1.21526 0.98255 0.97291 0.97710 1.21621 0.95632 0.97551 1.00946 1.19858 0.96126 0.94386 0.96308 0.93263 0.91755 0.91857 0.89416 0.91864 0.94764 0.93905 0.92669 0.86470 0.87104 0.78200 0.90221 0.91426 0.91184 0.91624 0.91314 0.91413 0.91192 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 10.24 37.16 0.38 -1.57 16 2 C 0.10 1.43 5.93 -4.05 -0.02 1.41 16 3 N -0.59 -11.51 2.46 -175.06 -0.43 -11.94 16 4 C 0.25 6.20 5.16 -5.19 -0.03 6.18 16 5 C -0.53 -14.59 9.39 -34.44 -0.32 -14.92 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 9 Si 0.90 21.62 29.54 -169.99 -5.02 16.59 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.49 9.50 7.74 -10.99 -0.09 9.42 16 14 O -0.52 -12.94 16.01 5.56 0.09 -12.85 16 15 C 0.08 1.13 5.04 -5.19 -0.03 1.11 16 16 N -0.43 -6.79 2.23 -115.25 -0.26 -7.04 16 17 C 0.18 2.98 12.57 -89.92 -1.13 1.85 16 18 N -0.49 -8.69 11.25 -10.74 -0.12 -8.81 16 19 C -0.01 -0.10 6.98 -82.89 -0.58 -0.68 16 20 C -0.01 -0.16 6.73 -81.85 -0.55 -0.71 16 21 C -0.04 -0.55 6.06 -27.70 -0.17 -0.72 16 22 C -0.11 -1.11 5.91 -26.44 -0.16 -1.26 16 23 C -0.12 -1.28 5.90 -26.45 -0.16 -1.44 16 24 C -0.03 -0.36 6.30 -27.61 -0.17 -0.54 16 25 H 0.05 0.52 7.22 -51.93 -0.37 0.15 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 29 H 0.06 0.68 6.44 -51.93 -0.33 0.35 16 30 H 0.03 0.86 8.07 -51.93 -0.42 0.45 16 31 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.12 1.27 7.39 -51.93 -0.38 0.88 16 34 H 0.11 1.22 7.00 -51.93 -0.36 0.85 16 35 H 0.20 2.60 8.06 -52.49 -0.42 2.17 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.07 0.73 7.99 -51.93 -0.41 0.32 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.62 8.12 -51.93 -0.42 0.19 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 352.49 15.07 5.31 5.31 Total: -1.00 -35.35 352.49 -9.67 -45.03 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.86 Total: -0.63 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -3.12 Total: -0.23 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.07 Total: -53.22 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.09 Total: -12.85 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.35 -9.67 -45.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272080664.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.660 kcal (2) G-P(sol) polarization free energy of solvation -35.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds