Wall clock time and date at job start Tue Mar 31 2020 06:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46488 * 109.47401 * 2 1 4 4 C 1.46505 * 120.00118 * 270.00035 * 3 2 1 5 5 C 1.50704 * 109.46947 * 270.00108 * 4 3 2 6 6 H 1.07995 * 119.99791 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99464 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00402 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99586 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47020 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47071 * 119.99922 * 9 7 5 12 12 H 1.48501 * 109.47026 * 240.00064 * 9 7 5 13 13 C 1.34774 * 120.00461 * 90.00295 * 3 2 1 14 14 O 1.21280 * 120.00439 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99570 * 359.97438 * 13 3 2 16 16 N 1.46511 * 109.47065 * 180.02562 * 15 13 3 17 17 C 1.35309 * 126.49215 * 265.02562 * 16 15 13 18 18 N 1.30751 * 108.76019 * 179.97438 * 17 16 15 19 19 C 1.33577 * 109.15485 * 359.97438 * 18 17 16 20 20 C 1.35037 * 107.97280 * 0.05860 * 19 18 17 21 21 C 1.50652 * 124.45237 * 179.82458 * 20 19 18 22 22 C 1.53394 * 108.38343 * 343.59919 * 21 20 19 23 23 C 1.53175 * 109.47545 * 49.63899 * 22 21 20 24 24 C 1.50860 * 128.03893 * 180.02562 * 19 18 17 25 25 H 1.09006 * 109.46810 * 300.00268 * 1 2 3 26 26 H 1.08998 * 109.47125 * 60.00035 * 1 2 3 27 27 H 1.09003 * 109.47450 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46783 * 239.99302 * 2 1 3 29 29 H 1.09007 * 109.46828 * 119.99899 * 2 1 3 30 30 H 1.08996 * 109.47033 * 29.99670 * 4 3 2 31 31 H 1.08998 * 109.47389 * 149.99915 * 4 3 2 32 32 H 0.97001 * 120.00075 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47331 * 60.00489 * 15 13 3 34 34 H 1.08996 * 109.47666 * 299.99958 * 15 13 3 35 35 H 1.07999 * 125.62151 * 359.94756 * 17 16 15 36 36 H 1.08999 * 109.67741 * 103.31857 * 21 20 19 37 37 H 1.08997 * 109.67822 * 223.87616 * 21 20 19 38 38 H 1.09004 * 109.47309 * 169.63185 * 22 21 20 39 39 H 1.08995 * 109.48103 * 289.64709 * 22 21 20 40 40 H 1.08997 * 109.51463 * 169.98766 * 23 22 21 41 41 H 1.09001 * 109.44267 * 49.99800 * 23 22 21 42 42 H 1.09002 * 109.67831 * 283.08903 * 24 19 18 43 43 H 1.09004 * 109.67519 * 43.59033 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8348 -1.7038 6 1 4.3428 1.2306 -1.0958 7 6 4.1491 2.3895 -2.8780 8 7 3.3492 3.1256 -3.6181 9 14 5.9136 2.0964 -3.4169 10 1 6.6015 1.2422 -2.4158 11 1 5.9215 1.4168 -4.7372 12 1 6.6205 3.3978 -3.5258 13 6 2.2431 2.0165 1.1671 14 8 2.6470 3.1600 1.1671 15 6 1.9914 1.3062 2.4723 16 7 2.3084 2.2040 3.5858 17 6 3.4803 2.2682 4.2592 18 7 3.3847 3.1888 5.1828 19 6 2.1673 3.7362 5.1317 20 6 1.4799 3.1316 4.1389 21 6 0.0597 3.4631 3.7611 22 6 -0.5740 4.2567 4.9106 23 6 0.3572 5.4042 5.3133 24 6 1.6044 4.8339 6.0000 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 1.5818 1.6876 -2.0284 31 1 2.0956 3.1409 -1.1385 32 1 3.6751 3.5154 -4.4444 33 1 2.6212 0.4185 2.5302 34 1 0.9433 1.0125 2.5299 35 1 4.3510 1.6592 4.0659 36 1 0.0526 4.0645 2.8521 37 1 -0.5009 2.5428 3.5975 38 1 -1.5322 4.6632 4.5866 39 1 -0.7289 3.5980 5.7650 40 1 -0.1629 6.0711 6.0009 41 1 0.6542 5.9597 4.4237 42 1 1.3338 4.4283 6.9749 43 1 2.3477 5.6215 6.1238 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272080664.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:06 Heat of formation + Delta-G solvation = -8.304956 kcal Electronic energy + Delta-G solvation = -23873.088769 eV Core-core repulsion = 20531.865430 eV Total energy + Delta-G solvation = -3341.223339 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.29921 -40.71899 -37.54153 -37.06786 -35.32019 -34.80427 -31.73803 -31.38740 -29.89698 -29.75063 -28.04842 -25.00714 -24.46164 -24.15101 -22.85967 -21.96344 -20.19856 -19.75580 -18.71614 -18.31661 -17.99022 -16.97590 -16.51586 -16.37901 -15.94774 -15.65879 -15.27497 -14.81398 -14.72818 -14.68220 -14.44608 -14.34868 -14.09243 -13.66448 -13.44136 -13.36393 -13.23568 -13.05275 -12.83134 -12.71842 -12.53811 -12.20787 -11.92046 -11.82014 -11.76353 -11.73696 -11.72864 -11.12924 -10.77778 -10.69035 -10.30529 -9.53936 -9.01445 -8.27032 -6.41480 0.98056 1.33201 1.36266 1.47011 1.63327 1.73847 2.13914 2.28338 2.41688 3.03604 3.47185 3.53925 3.69146 3.77852 3.92486 3.99032 4.03183 4.17707 4.23481 4.37208 4.39790 4.57692 4.61158 4.63698 4.70644 4.82117 4.90057 4.96580 5.02700 5.03292 5.10270 5.16589 5.18050 5.27673 5.38677 5.45391 5.50262 5.52187 5.77601 5.88658 6.00885 6.22706 6.62897 6.70478 7.13535 7.21363 7.35776 8.80451 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018680 B = 0.004282 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.531033 B = 6537.763798 C = 6993.304988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 N -0.594 5.594 4 C 0.264 3.736 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.965 3.035 10 H -0.265 1.265 11 H -0.268 1.268 12 H -0.286 1.286 13 C 0.482 3.518 14 O -0.587 6.587 15 C 0.095 3.905 16 N -0.436 5.436 17 C 0.171 3.829 18 N -0.522 5.522 19 C -0.031 4.031 20 C -0.022 4.022 21 C -0.044 4.044 22 C -0.104 4.104 23 C -0.117 4.117 24 C -0.030 4.030 25 H 0.062 0.938 26 H 0.037 0.963 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.026 0.974 31 H -0.008 1.008 32 H 0.267 0.733 33 H 0.157 0.843 34 H 0.149 0.851 35 H 0.225 0.775 36 H 0.054 0.946 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.044 0.956 42 H 0.087 0.913 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.340 -7.567 16.093 20.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.326 5.326 4 C 0.143 3.857 5 C -0.580 4.580 6 H 0.074 0.926 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.790 3.210 10 H -0.189 1.189 11 H -0.193 1.193 12 H -0.212 1.212 13 C 0.269 3.731 14 O -0.467 6.467 15 C -0.030 4.030 16 N -0.117 5.117 17 C -0.110 4.110 18 N -0.240 5.240 19 C -0.160 4.160 20 C -0.138 4.138 21 C -0.083 4.083 22 C -0.142 4.142 23 C -0.155 4.155 24 C -0.068 4.068 25 H 0.081 0.919 26 H 0.056 0.944 27 H 0.117 0.883 28 H 0.094 0.906 29 H 0.126 0.874 30 H 0.044 0.956 31 H 0.010 0.990 32 H 0.076 0.924 33 H 0.175 0.825 34 H 0.166 0.834 35 H 0.241 0.759 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.063 0.937 42 H 0.105 0.895 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.556 -6.784 16.342 20.110 hybrid contribution 0.806 0.101 -1.745 1.924 sum -8.750 -6.683 14.597 18.284 Atomic orbital electron populations 1.22183 0.94344 1.03800 1.01809 1.21892 0.95492 0.80811 1.04640 1.48257 1.63290 1.15276 1.05744 1.18701 0.95390 0.91340 0.80311 1.21735 0.97871 1.31989 1.06438 0.92633 1.25840 1.02250 0.94468 0.96536 1.70049 1.37719 1.34234 1.14830 0.85399 0.79132 0.77915 0.78562 1.18926 1.19263 1.21183 1.21324 0.78237 0.86879 0.86677 1.90736 1.47638 1.20637 1.87725 1.22004 1.07414 0.92529 0.81070 1.44751 1.12535 1.29163 1.25284 1.25420 0.91034 1.01454 0.93113 1.69895 1.20480 1.10413 1.23253 1.20993 0.91033 1.02707 1.01290 1.21339 0.96861 0.96342 0.99250 1.20205 0.87565 1.01164 0.99326 1.21543 0.98564 0.96864 0.97194 1.21627 0.95235 0.98123 1.00471 1.19989 0.96642 0.93323 0.96836 0.91863 0.94407 0.88295 0.90578 0.87361 0.95639 0.98979 0.92428 0.82503 0.83362 0.75875 0.92748 0.89069 0.88993 0.90159 0.88419 0.93710 0.89487 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 10.24 71.98 0.74 -2.53 16 2 C 0.09 2.37 5.93 86.38 0.51 2.89 16 3 N -0.59 -23.02 2.46 -826.17 -2.03 -25.04 16 4 C 0.26 13.80 5.16 85.63 0.44 14.24 16 5 C -0.54 -30.58 9.39 25.60 0.24 -30.34 16 6 H 0.06 3.08 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.46 5.46 84.66 0.46 0.93 16 8 N -0.93 -55.96 13.29 21.45 0.28 -55.68 16 9 Si 0.97 44.69 29.54 68.60 2.03 46.71 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 13 C 0.48 18.61 7.74 87.66 0.68 19.29 16 14 O -0.59 -30.43 16.01 -3.03 -0.05 -30.48 16 15 C 0.10 2.34 5.04 85.63 0.43 2.78 16 16 N -0.44 -13.14 2.23 -518.54 -1.16 -14.30 16 17 C 0.17 5.40 12.57 180.10 2.26 7.67 16 18 N -0.52 -18.62 11.25 -187.90 -2.11 -20.73 16 19 C -0.03 -1.02 6.98 41.61 0.29 -0.73 16 20 C -0.02 -0.69 6.73 41.14 0.28 -0.41 16 21 C -0.04 -1.06 6.06 29.97 0.18 -0.88 16 22 C -0.10 -1.85 5.91 30.78 0.18 -1.67 16 23 C -0.12 -2.36 5.90 30.78 0.18 -2.18 16 24 C -0.03 -0.74 6.30 30.02 0.19 -0.55 16 25 H 0.06 1.10 7.22 -2.38 -0.02 1.08 16 26 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.08 2.13 8.07 -2.39 -0.02 2.11 16 29 H 0.11 1.80 6.44 -2.38 -0.02 1.78 16 30 H 0.03 1.36 8.07 -2.39 -0.02 1.34 16 31 H -0.01 -0.49 7.42 -2.39 -0.02 -0.51 16 32 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 33 H 0.16 2.63 7.39 -2.39 -0.02 2.62 16 34 H 0.15 2.56 7.00 -2.39 -0.02 2.54 16 35 H 0.22 5.50 8.06 -2.91 -0.02 5.48 16 36 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.09 1.70 7.99 -2.39 -0.02 1.68 16 38 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.08 1.23 8.12 -2.39 -0.02 1.21 16 40 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.04 1.10 8.12 -2.39 -0.02 1.08 16 42 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -83.06 352.49 5.02 -78.04 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.99 Total: 12.98 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 7.07 Total: 8.50 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -5.01 Total: -115.75 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.05 Total: -30.48 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -83.06 5.02 -78.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272080664.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.730 kcal (2) G-P(sol) polarization free energy of solvation -83.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds