Wall clock time and date at job start Tue Mar 31 2020 07:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99776 * 2 1 4 4 C 1.53001 * 109.47367 * 269.99917 * 3 2 1 5 5 N 1.46504 * 109.46976 * 180.02562 * 4 3 2 6 6 C 1.34773 * 119.99625 * 180.02562 * 5 4 3 7 7 O 1.21592 * 120.00228 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99968 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00141 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47013 * 179.97438 * 9 8 6 11 11 C 1.50696 * 109.47334 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99980 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00709 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99319 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00617 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47054 * 89.99776 * 15 13 11 17 17 H 1.48493 * 109.47366 * 210.00647 * 15 13 11 18 18 H 1.48508 * 109.46687 * 330.00514 * 15 13 11 19 19 C 1.39675 * 120.00236 * 180.02562 * 2 1 3 20 20 C 1.38914 * 120.07317 * 359.97438 * 19 2 1 21 21 C 1.38100 * 119.92419 * 179.97438 * 20 19 2 22 22 C 1.38288 * 120.07489 * 359.97438 * 21 20 19 23 23 C 1.38283 * 120.14964 * 0.27921 * 22 21 20 24 24 C 1.38104 * 120.07445 * 359.44998 * 23 22 21 25 25 H 1.08994 * 109.47097 * 269.99854 * 1 2 3 26 26 H 1.09001 * 109.47265 * 29.99978 * 1 2 3 27 27 H 1.08996 * 109.46960 * 149.99772 * 1 2 3 28 28 H 1.09001 * 109.47060 * 30.00465 * 3 2 1 29 29 H 1.09007 * 109.46721 * 150.00254 * 3 2 1 30 30 H 1.08996 * 109.47038 * 300.00136 * 4 3 2 31 31 H 1.08997 * 109.46498 * 60.00152 * 4 3 2 32 32 H 0.97000 * 119.99940 * 0.02562 * 5 4 3 33 33 H 0.97000 * 119.99597 * 359.97438 * 8 6 5 34 34 H 1.08993 * 109.46955 * 299.99947 * 9 8 6 35 35 H 1.08996 * 109.47001 * 60.00040 * 9 8 6 36 36 H 1.08998 * 109.47374 * 300.00360 * 10 9 8 37 37 H 1.09003 * 109.47411 * 60.00470 * 10 9 8 38 38 H 0.97004 * 119.99875 * 180.02562 * 14 13 11 39 39 H 1.07999 * 120.03435 * 359.97438 * 20 19 2 40 40 H 1.08000 * 119.95830 * 180.02562 * 21 20 19 41 41 H 1.08002 * 119.92149 * 179.97438 * 22 21 20 42 42 H 1.08001 * 119.96059 * 179.69879 * 23 22 21 43 43 H 1.07999 * 120.04050 * 180.27354 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 7 3.1855 2.9790 -1.4424 6 6 3.5221 3.5628 -2.6095 7 8 3.2178 3.0365 -3.6626 8 7 4.1968 4.7295 -2.6095 9 6 4.5632 5.3638 -3.8783 10 6 5.3158 6.6662 -3.5986 11 6 5.6922 7.3191 -4.9036 12 1 5.4212 6.8520 -5.8390 13 6 6.3815 8.5132 -4.9037 14 7 6.7109 9.0822 -3.7647 15 14 6.8486 9.3221 -6.5213 16 1 5.7598 10.2363 -6.9501 17 1 8.1035 10.0958 -6.3437 18 1 7.0536 8.2770 -7.5562 19 6 2.1634 -1.2096 -0.0005 20 6 1.4704 -2.4135 -0.0005 21 6 2.1641 -3.6077 -0.0016 22 6 3.5470 -3.6058 -0.0032 23 6 4.2399 -2.4092 0.0021 24 6 3.5525 -1.2114 -0.0025 25 1 -0.3633 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5139 28 1 1.6084 2.0284 0.5139 29 1 3.1499 1.1384 0.5138 30 1 3.0416 0.9509 -1.9563 31 1 1.5001 1.8408 -1.9562 32 1 3.4285 3.3986 -0.6023 33 1 4.4399 5.1491 -1.7695 34 1 5.2016 4.6905 -4.4501 35 1 3.6608 5.5816 -4.4495 36 1 4.6771 7.3394 -3.0269 37 1 6.2183 6.4489 -3.0272 38 1 7.1956 9.9225 -3.7646 39 1 0.3904 -2.4156 0.0003 40 1 1.6259 -4.5440 -0.0020 41 1 4.0869 -4.5412 -0.0036 42 1 5.3199 -2.4113 0.0057 43 1 4.0943 -0.2771 -0.0028 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273023131.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:56 Heat of formation + Delta-G solvation = -2.805537 kcal Electronic energy + Delta-G solvation = -21892.285870 eV Core-core repulsion = 18551.301003 eV Total energy + Delta-G solvation = -3340.984867 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.99849 -39.43984 -36.93144 -35.04709 -34.33278 -32.82395 -31.40599 -30.50423 -29.74559 -28.79992 -26.03668 -24.62574 -23.27877 -22.28366 -21.06780 -20.93089 -20.47465 -18.19391 -17.81697 -16.50997 -16.18244 -15.87565 -15.58466 -15.48586 -14.78590 -14.74541 -14.50496 -14.10432 -13.93359 -13.76155 -13.58331 -13.43545 -12.94493 -12.82514 -12.37169 -12.29052 -12.24460 -11.65188 -11.58403 -11.18308 -11.03188 -11.00030 -10.62741 -10.31237 -10.14929 -9.95787 -9.55796 -9.25974 -9.12272 -9.04222 -8.48258 -8.24973 -7.57818 -6.08878 -4.11341 1.24981 1.40711 2.56530 3.24861 3.30142 3.36304 3.41310 3.59090 3.70993 4.40255 4.50279 4.58966 4.65915 4.73213 4.79152 4.91408 4.97769 5.10788 5.18010 5.27759 5.28296 5.32850 5.42945 5.48792 5.64835 5.79851 5.83160 6.05147 6.29328 6.30461 6.40461 6.45668 6.53112 6.64721 6.78251 6.94947 7.00044 7.20883 7.22283 7.57105 7.63750 7.90433 8.26257 8.42918 8.93231 8.99697 9.53343 11.02794 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.032791 B = 0.002184 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.682585 B =12820.066882 C =13161.133599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.628 5.628 3 C 0.114 3.886 4 C 0.122 3.878 5 N -0.753 5.753 6 C 0.699 3.301 7 O -0.597 6.597 8 N -0.738 5.738 9 C 0.140 3.860 10 C 0.013 3.987 11 C -0.520 4.520 12 H 0.060 0.940 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.272 1.272 19 C 0.215 3.785 20 C -0.198 4.198 21 C -0.075 4.075 22 C -0.180 4.180 23 C -0.072 4.072 24 C -0.194 4.194 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.394 0.606 33 H 0.393 0.607 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.262 0.738 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.693 -21.548 13.849 27.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.339 5.339 3 C -0.010 4.010 4 C -0.005 4.005 5 N -0.411 5.411 6 C 0.398 3.602 7 O -0.475 6.475 8 N -0.392 5.392 9 C 0.017 3.983 10 C -0.025 4.025 11 C -0.559 4.559 12 H 0.078 0.922 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.725 3.275 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.197 1.197 19 C 0.114 3.886 20 C -0.220 4.220 21 C -0.094 4.094 22 C -0.200 4.200 23 C -0.091 4.091 24 C -0.217 4.217 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.227 0.773 33 H 0.226 0.774 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.138 0.862 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.994 -21.706 12.906 27.542 hybrid contribution 0.502 0.991 -0.065 1.112 sum -10.492 -20.715 12.841 26.535 Atomic orbital electron populations 1.21671 0.79247 1.02972 1.01184 1.46253 1.04914 1.02476 1.80299 1.21543 0.98014 0.85539 0.95944 1.21532 0.96858 0.85111 0.96967 1.44970 1.63172 1.25386 1.07559 1.16037 0.79140 0.81266 0.83713 1.90900 1.60702 1.65632 1.30302 1.45530 1.59785 1.22587 1.11263 1.21594 0.98877 0.95333 0.82485 1.19324 0.95180 0.89924 0.98026 1.21056 1.36212 1.06233 0.92401 0.92216 1.25001 0.95702 0.97097 0.96564 1.69957 1.39829 1.18342 1.25239 0.86502 0.77903 0.79439 0.83656 1.20572 1.21187 1.19712 1.17852 0.91257 0.85603 0.93922 1.20675 0.99593 0.91136 1.10584 1.20882 0.94262 0.97135 0.97096 1.20921 0.94296 0.97857 1.06964 1.20926 0.99588 0.91981 0.96607 1.20757 0.92162 0.98890 1.09848 0.93234 0.91262 0.91224 0.90022 0.89920 0.91512 0.91776 0.77293 0.77388 0.92772 0.92803 0.95981 0.95955 0.92876 0.86104 0.86343 0.86579 0.86182 0.85949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 10.19 59.85 0.61 1.20 16 2 N -0.63 -5.35 3.01 -179.62 -0.54 -5.89 16 3 C 0.11 0.90 5.27 -4.04 -0.02 0.88 16 4 C 0.12 1.37 6.00 -4.04 -0.02 1.34 16 5 N -0.75 -9.25 5.56 -65.22 -0.36 -9.61 16 6 C 0.70 12.33 8.57 -86.92 -0.74 11.59 16 7 O -0.60 -13.20 16.34 5.28 0.09 -13.11 16 8 N -0.74 -13.07 5.56 -65.23 -0.36 -13.43 16 9 C 0.14 3.04 5.61 -4.04 -0.02 3.02 16 10 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 11 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 12 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 15 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 19 C 0.21 2.10 6.55 -83.79 -0.55 1.55 16 20 C -0.20 -1.78 9.21 -39.38 -0.36 -2.14 16 21 C -0.08 -0.64 10.04 -39.61 -0.40 -1.04 16 22 C -0.18 -1.59 10.04 -39.55 -0.40 -1.98 16 23 C -0.07 -0.67 10.04 -39.61 -0.40 -1.07 16 24 C -0.19 -1.94 9.21 -39.38 -0.36 -2.30 16 25 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 27 H 0.07 0.41 6.20 -51.93 -0.32 0.09 16 28 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 29 H 0.08 0.60 6.20 -51.92 -0.32 0.28 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.39 3.53 8.49 -40.82 -0.35 3.19 16 33 H 0.39 5.88 8.49 -40.82 -0.35 5.53 16 34 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.12 0.88 6.14 -52.49 -0.32 0.56 16 40 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 43 H 0.12 1.14 6.14 -52.49 -0.32 0.82 16 LS Contribution 360.01 15.07 5.43 5.43 Total: -1.00 -33.89 360.01 -9.85 -43.74 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.59 Total: 3.91 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -3.22 Total: -2.06 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: -0.53 Total: -54.35 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.09 Total: -13.11 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.89 -9.85 -43.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273023131.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.932 kcal (2) G-P(sol) polarization free energy of solvation -33.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds