Wall clock time and date at job start Tue Mar 31 2020 07:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99776 * 2 1 4 4 C 1.53001 * 109.47367 * 269.99917 * 3 2 1 5 5 N 1.46504 * 109.46976 * 180.02562 * 4 3 2 6 6 C 1.34773 * 119.99625 * 180.02562 * 5 4 3 7 7 O 1.21592 * 120.00228 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99968 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00141 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47013 * 179.97438 * 9 8 6 11 11 C 1.50696 * 109.47334 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99980 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00709 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99319 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00617 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47054 * 89.99776 * 15 13 11 17 17 H 1.48493 * 109.47366 * 210.00647 * 15 13 11 18 18 H 1.48508 * 109.46687 * 330.00514 * 15 13 11 19 19 C 1.39675 * 120.00236 * 180.02562 * 2 1 3 20 20 C 1.38914 * 120.07317 * 359.97438 * 19 2 1 21 21 C 1.38100 * 119.92419 * 179.97438 * 20 19 2 22 22 C 1.38288 * 120.07489 * 359.97438 * 21 20 19 23 23 C 1.38283 * 120.14964 * 0.27921 * 22 21 20 24 24 C 1.38104 * 120.07445 * 359.44998 * 23 22 21 25 25 H 1.08994 * 109.47097 * 269.99854 * 1 2 3 26 26 H 1.09001 * 109.47265 * 29.99978 * 1 2 3 27 27 H 1.08996 * 109.46960 * 149.99772 * 1 2 3 28 28 H 1.09001 * 109.47060 * 30.00465 * 3 2 1 29 29 H 1.09007 * 109.46721 * 150.00254 * 3 2 1 30 30 H 1.08996 * 109.47038 * 300.00136 * 4 3 2 31 31 H 1.08997 * 109.46498 * 60.00152 * 4 3 2 32 32 H 0.97000 * 119.99940 * 0.02562 * 5 4 3 33 33 H 0.97000 * 119.99597 * 359.97438 * 8 6 5 34 34 H 1.08993 * 109.46955 * 299.99947 * 9 8 6 35 35 H 1.08996 * 109.47001 * 60.00040 * 9 8 6 36 36 H 1.08998 * 109.47374 * 300.00360 * 10 9 8 37 37 H 1.09003 * 109.47411 * 60.00470 * 10 9 8 38 38 H 0.97004 * 119.99875 * 180.02562 * 14 13 11 39 39 H 1.07999 * 120.03435 * 359.97438 * 20 19 2 40 40 H 1.08000 * 119.95830 * 180.02562 * 21 20 19 41 41 H 1.08002 * 119.92149 * 179.97438 * 22 21 20 42 42 H 1.08001 * 119.96059 * 179.69879 * 23 22 21 43 43 H 1.07999 * 120.04050 * 180.27354 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 7 3.1855 2.9790 -1.4424 6 6 3.5221 3.5628 -2.6095 7 8 3.2178 3.0365 -3.6626 8 7 4.1968 4.7295 -2.6095 9 6 4.5632 5.3638 -3.8783 10 6 5.3158 6.6662 -3.5986 11 6 5.6922 7.3191 -4.9036 12 1 5.4212 6.8520 -5.8390 13 6 6.3815 8.5132 -4.9037 14 7 6.7109 9.0822 -3.7647 15 14 6.8486 9.3221 -6.5213 16 1 5.7598 10.2363 -6.9501 17 1 8.1035 10.0958 -6.3437 18 1 7.0536 8.2770 -7.5562 19 6 2.1634 -1.2096 -0.0005 20 6 1.4704 -2.4135 -0.0005 21 6 2.1641 -3.6077 -0.0016 22 6 3.5470 -3.6058 -0.0032 23 6 4.2399 -2.4092 0.0021 24 6 3.5525 -1.2114 -0.0025 25 1 -0.3633 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5139 28 1 1.6084 2.0284 0.5139 29 1 3.1499 1.1384 0.5138 30 1 3.0416 0.9509 -1.9563 31 1 1.5001 1.8408 -1.9562 32 1 3.4285 3.3986 -0.6023 33 1 4.4399 5.1491 -1.7695 34 1 5.2016 4.6905 -4.4501 35 1 3.6608 5.5816 -4.4495 36 1 4.6771 7.3394 -3.0269 37 1 6.2183 6.4489 -3.0272 38 1 7.1956 9.9225 -3.7646 39 1 0.3904 -2.4156 0.0003 40 1 1.6259 -4.5440 -0.0020 41 1 4.0869 -4.5412 -0.0036 42 1 5.3199 -2.4113 0.0057 43 1 4.0943 -0.2771 -0.0028 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273023131.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:55 Heat of formation + Delta-G solvation = -25.142506 kcal Electronic energy + Delta-G solvation = -21893.254473 eV Core-core repulsion = 18551.301003 eV Total energy + Delta-G solvation = -3341.953470 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.07947 -40.43490 -37.71540 -36.62919 -35.58312 -34.79845 -32.22385 -31.65558 -30.84168 -29.80173 -27.07021 -26.21032 -24.19316 -23.00760 -22.84080 -22.07113 -21.47691 -19.46018 -18.61006 -18.40544 -17.42774 -16.88432 -16.56033 -16.45116 -16.33899 -15.79729 -15.71414 -15.16712 -15.09931 -14.85875 -14.56431 -14.43751 -14.23764 -14.11220 -13.43699 -13.21288 -13.09328 -12.94715 -12.84894 -12.52273 -12.42166 -12.24166 -12.19641 -11.70651 -11.64534 -11.51093 -11.24537 -10.78645 -10.60317 -10.38562 -9.79520 -9.73571 -8.24183 -8.22981 -6.33709 0.57476 0.72720 1.42118 1.42755 1.53630 1.60806 2.14519 2.29164 2.43104 3.03015 3.11081 3.43064 3.84940 3.88814 4.00765 4.14796 4.33199 4.38123 4.43863 4.48596 4.52084 4.62722 4.65871 4.69715 4.74301 4.86647 4.90754 4.92302 4.98390 5.19610 5.30648 5.36814 5.44904 5.51709 5.60219 5.65062 5.79044 5.79335 6.00637 6.03381 6.17827 6.32302 6.56490 6.79320 7.12799 7.35453 7.58428 8.88089 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.032791 B = 0.002184 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.682585 B =12820.066882 C =13161.133599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.632 5.632 3 C 0.123 3.877 4 C 0.127 3.873 5 N -0.728 5.728 6 C 0.697 3.303 7 O -0.643 6.643 8 N -0.731 5.731 9 C 0.160 3.840 10 C 0.024 3.976 11 C -0.546 4.546 12 H 0.058 0.942 13 C 0.007 3.993 14 N -0.926 5.926 15 Si 0.965 3.035 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.267 1.267 19 C 0.200 3.800 20 C -0.207 4.207 21 C -0.081 4.081 22 C -0.191 4.191 23 C -0.086 4.086 24 C -0.213 4.213 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.414 0.586 33 H 0.408 0.592 34 H 0.041 0.959 35 H 0.043 0.957 36 H 0.010 0.990 37 H 0.010 0.990 38 H 0.266 0.734 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.260 -21.987 14.522 28.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.343 5.343 3 C -0.001 4.001 4 C 0.001 3.999 5 N -0.386 5.386 6 C 0.397 3.603 7 O -0.525 6.525 8 N -0.386 5.386 9 C 0.036 3.964 10 C -0.013 4.013 11 C -0.585 4.585 12 H 0.076 0.924 13 C -0.192 4.192 14 N -0.565 5.565 15 Si 0.789 3.211 16 H -0.197 1.197 17 H -0.205 1.205 18 H -0.192 1.192 19 C 0.098 3.902 20 C -0.229 4.229 21 C -0.100 4.100 22 C -0.211 4.211 23 C -0.104 4.104 24 C -0.235 4.235 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.123 0.877 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.251 0.749 33 H 0.244 0.756 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.029 0.971 37 H 0.028 0.972 38 H 0.075 0.925 39 H 0.153 0.847 40 H 0.158 0.842 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.575 -22.156 13.656 28.484 hybrid contribution 0.654 1.060 -0.230 1.267 sum -10.921 -21.096 13.426 27.287 Atomic orbital electron populations 1.21810 0.78075 1.03413 1.02129 1.46389 1.05701 1.02153 1.80052 1.21497 0.99083 0.86019 0.93508 1.21578 0.95432 0.83645 0.99224 1.44723 1.61842 1.25251 1.06798 1.16169 0.78801 0.80929 0.84414 1.90871 1.62424 1.66737 1.32480 1.45187 1.59973 1.22821 1.10622 1.21071 0.97641 0.93819 0.83911 1.19124 0.94603 0.90916 0.96673 1.21465 1.36645 1.06944 0.93443 0.92388 1.25865 0.95508 0.97663 1.00175 1.70054 1.40345 1.18830 1.27290 0.85445 0.77831 0.78458 0.79316 1.19744 1.20483 1.19167 1.18065 0.91446 0.86423 0.94222 1.20942 1.00499 0.91088 1.10400 1.21212 0.94412 0.97986 0.96341 1.21206 0.94770 0.98364 1.06723 1.21174 1.00376 0.92181 0.96686 1.20907 0.92623 0.99234 1.10771 0.91946 0.90791 0.90892 0.87652 0.89055 0.93834 0.92935 0.74891 0.75591 0.94008 0.93892 0.97147 0.97205 0.92543 0.84663 0.84234 0.85009 0.85150 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.98 10.19 127.77 1.30 2.28 16 2 N -0.63 -9.85 3.01 -722.18 -2.17 -12.02 16 3 C 0.12 1.72 5.27 86.38 0.46 2.18 16 4 C 0.13 2.76 6.00 86.38 0.52 3.28 16 5 N -0.73 -16.96 5.56 -478.53 -2.66 -19.62 16 6 C 0.70 24.32 8.57 179.06 1.53 25.86 16 7 O -0.64 -28.74 16.34 -4.01 -0.07 -28.80 16 8 N -0.73 -25.60 5.56 -478.54 -2.66 -28.26 16 9 C 0.16 7.03 5.61 86.38 0.48 7.51 16 10 C 0.02 1.23 5.09 29.85 0.15 1.38 16 11 C -0.55 -30.69 9.11 25.60 0.23 -30.46 16 12 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 13 C 0.01 0.37 5.46 84.65 0.46 0.84 16 14 N -0.93 -54.12 13.29 21.45 0.28 -53.83 16 15 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 19 C 0.20 3.73 6.55 38.21 0.25 3.98 16 20 C -0.21 -3.47 9.21 22.40 0.21 -3.27 16 21 C -0.08 -1.27 10.04 22.25 0.22 -1.05 16 22 C -0.19 -3.16 10.04 22.29 0.22 -2.94 16 23 C -0.09 -1.56 10.04 22.25 0.22 -1.33 16 24 C -0.21 -4.16 9.21 22.40 0.21 -3.95 16 25 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.07 0.75 8.07 -2.39 -0.02 0.73 16 27 H 0.07 0.75 6.20 -2.39 -0.01 0.74 16 28 H 0.11 1.02 8.07 -2.39 -0.02 1.01 16 29 H 0.09 1.16 6.20 -2.38 -0.01 1.14 16 30 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.41 6.47 8.49 -92.71 -0.79 5.69 16 33 H 0.41 11.79 8.49 -92.71 -0.79 11.00 16 34 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 39 H 0.14 1.75 6.14 -2.91 -0.02 1.74 16 40 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 41 H 0.13 1.66 8.06 -2.91 -0.02 1.64 16 42 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 43 H 0.12 2.25 6.14 -2.91 -0.02 2.23 16 Total: -1.00 -72.93 360.01 0.67 -72.26 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -0.56 Total: 20.18 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 6.47 Total: 4.32 kcal Atomic # 7 Polarization: -106.53 SS G_CDS: -7.21 Total: -113.74 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.07 Total: -28.80 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -72.93 0.67 -72.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273023131.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.118 kcal (2) G-P(sol) polarization free energy of solvation -72.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds