Wall clock time and date at job start Tue Mar 31 2020 07:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36339 * 125.63848 * 2 1 4 4 C 1.34846 * 108.22141 * 180.02562 * 3 2 1 5 5 C 1.40892 * 107.41549 * 359.77304 * 4 3 2 6 6 C 1.34846 * 107.41829 * 0.37239 * 5 4 3 7 7 C 1.50700 * 125.89164 * 179.88390 * 6 5 4 8 8 H 1.08998 * 109.87699 * 205.12904 * 7 6 5 9 9 C 1.54329 * 110.00892 * 84.03797 * 7 6 5 10 10 C 1.55163 * 102.93864 * 218.31796 * 9 7 6 11 11 C 1.54688 * 101.67918 * 35.33314 * 10 9 7 12 12 N 1.47015 * 109.88367 * 326.15263 * 7 6 5 13 13 C 1.34784 * 125.64701 * 298.47150 * 12 7 6 14 14 O 1.21582 * 120.00012 * 0.02562 * 13 12 7 15 15 N 1.34771 * 119.99815 * 180.02562 * 13 12 7 16 16 C 1.46506 * 119.99985 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47380 * 179.97438 * 16 15 13 18 18 C 1.50696 * 109.47110 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00012 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99842 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00069 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99806 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46845 * 90.00621 * 22 20 18 24 24 H 1.48503 * 109.47399 * 210.00111 * 22 20 18 25 25 H 1.48498 * 109.47295 * 330.00717 * 22 20 18 26 26 H 1.09005 * 109.47198 * 269.97714 * 1 2 3 27 27 H 1.08995 * 109.47445 * 29.97614 * 1 2 3 28 28 H 1.08999 * 109.47539 * 149.97527 * 1 2 3 29 29 H 1.08005 * 125.88599 * 0.05826 * 3 2 1 30 30 H 1.07999 * 126.29543 * 180.02562 * 4 3 2 31 31 H 1.08008 * 126.28912 * 180.24315 * 5 4 3 32 32 H 1.08998 * 110.71876 * 336.67748 * 9 7 6 33 33 H 1.08991 * 110.72320 * 99.77525 * 9 7 6 34 34 H 1.08999 * 111.00189 * 153.57569 * 10 9 7 35 35 H 1.08996 * 111.00372 * 277.42022 * 10 9 7 36 36 H 1.08990 * 110.39323 * 204.36244 * 11 10 9 37 37 H 1.09009 * 110.23291 * 82.11021 * 11 10 9 38 38 H 0.97001 * 120.00536 * 359.97438 * 15 13 12 39 39 H 1.09005 * 109.46528 * 59.99939 * 16 15 13 40 40 H 1.08996 * 109.47073 * 300.00635 * 16 15 13 41 41 H 1.09008 * 109.46748 * 60.00194 * 17 16 15 42 42 H 1.08991 * 109.47440 * 300.00398 * 17 16 15 43 43 H 0.97000 * 119.99838 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2593 1.1080 0.0000 4 6 3.5460 0.7044 -0.0006 5 6 3.5459 -0.7045 0.0044 6 6 2.2593 -1.1081 -0.0006 7 6 1.7818 -2.5375 -0.0004 8 1 0.7861 -2.5956 -0.4399 9 6 1.7511 -3.0838 1.4427 10 6 2.2375 -4.5471 1.2706 11 6 3.2779 -4.3998 0.1354 12 7 2.7157 -3.3768 -0.7650 13 6 3.0055 -3.2377 -2.0740 14 8 2.4757 -2.3571 -2.7237 15 7 3.8824 -4.0749 -2.6626 16 6 4.1970 -3.9241 -4.0855 17 6 5.2120 -4.9916 -4.4994 18 6 5.5350 -4.8368 -5.9632 19 1 5.0638 -4.0551 -6.5405 20 6 6.4321 -5.6933 -6.5654 21 7 7.0054 -6.6456 -5.8626 22 14 6.8330 -5.5011 -8.3798 23 1 7.9874 -4.5802 -8.5366 24 1 7.1759 -6.8269 -8.9542 25 1 5.6547 -4.9433 -9.0907 26 1 -0.3634 -0.0004 1.0277 27 1 -0.3634 0.8901 -0.5134 28 1 -0.3634 -0.8897 -0.5142 29 1 1.9171 2.1324 0.0009 30 1 4.4165 1.3436 -0.0003 31 1 4.4165 -1.3438 0.0090 32 1 2.4332 -2.5232 2.0818 33 1 0.7382 -3.0559 1.8441 34 1 2.7037 -4.9138 2.1851 35 1 1.4186 -5.1975 0.9635 36 1 3.3996 -5.3450 -0.3933 37 1 4.2330 -4.0650 0.5405 38 1 4.3054 -4.7772 -2.1442 39 1 4.6188 -2.9345 -4.2615 40 1 3.2864 -4.0407 -4.6732 41 1 4.7905 -5.9813 -4.3233 42 1 6.1224 -4.8746 -3.9117 43 1 6.7975 -6.7452 -4.9204 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273279777.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:24 Heat of formation + Delta-G solvation = 18.199888 kcal Electronic energy + Delta-G solvation = -23476.237514 eV Core-core repulsion = 20136.163511 eV Total energy + Delta-G solvation = -3340.074003 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.36487 -39.76411 -37.49074 -34.91086 -33.09263 -32.84384 -31.57854 -30.84501 -28.91846 -27.07428 -26.37975 -24.53760 -23.20968 -21.62978 -21.31855 -20.54764 -20.01260 -18.87009 -17.89892 -17.14691 -16.61567 -16.14791 -15.31105 -15.17903 -14.76575 -14.26008 -14.22052 -13.70635 -13.51086 -13.46687 -13.20016 -13.03852 -12.82261 -12.46256 -12.36480 -12.15892 -12.02125 -11.88518 -11.60867 -11.54357 -11.47941 -10.98527 -10.92006 -10.38779 -10.14001 -9.94041 -9.77966 -8.75782 -8.66367 -8.49109 -8.40020 -8.24984 -7.85636 -6.40909 -4.10184 2.24563 2.74241 3.08524 3.20108 3.45160 3.48486 3.60087 3.64567 4.23882 4.35393 4.50137 4.58900 4.60878 4.66804 4.88641 4.95222 5.01994 5.15002 5.22976 5.30707 5.37473 5.45485 5.50759 5.60080 5.61731 5.71580 5.82342 5.93526 6.12940 6.32192 6.32325 6.40008 6.49208 6.68116 6.95110 7.09731 7.22666 7.32470 7.40798 7.42546 7.43542 8.12488 8.36647 8.42556 8.83568 9.01140 9.61550 11.00356 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.021622 B = 0.003445 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.647326 B = 8125.103285 C = 8847.394174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.444 5.444 3 C -0.019 4.019 4 C -0.199 4.199 5 C -0.177 4.177 6 C 0.019 3.981 7 C 0.229 3.771 8 H 0.072 0.928 9 C -0.122 4.122 10 C -0.130 4.130 11 C 0.098 3.902 12 N -0.631 5.631 13 C 0.720 3.280 14 O -0.584 6.584 15 N -0.739 5.739 16 C 0.149 3.851 17 C 0.001 3.999 18 C -0.600 4.600 19 H 0.053 0.947 20 C 0.017 3.983 21 N -0.912 5.912 22 Si 1.074 2.926 23 H -0.287 1.287 24 H -0.284 1.284 25 H -0.287 1.287 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.158 0.842 30 H 0.132 0.868 31 H 0.126 0.874 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.391 0.609 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.012 0.988 42 H 0.013 0.987 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.728 8.570 19.506 24.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.121 5.121 3 C -0.149 4.149 4 C -0.224 4.224 5 C -0.201 4.201 6 C -0.093 4.093 7 C 0.123 3.877 8 H 0.090 0.910 9 C -0.160 4.160 10 C -0.168 4.168 11 C -0.025 4.025 12 N -0.371 5.371 13 C 0.421 3.579 14 O -0.461 6.461 15 N -0.393 5.393 16 C 0.026 3.974 17 C -0.037 4.037 18 C -0.639 4.639 19 H 0.072 0.928 20 C -0.187 4.187 21 N -0.548 5.548 22 Si 0.902 3.098 23 H -0.214 1.214 24 H -0.210 1.210 25 H -0.213 1.213 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.175 0.825 30 H 0.150 0.850 31 H 0.144 0.856 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.224 0.776 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.031 0.969 42 H 0.031 0.969 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.572 8.600 17.625 23.295 hybrid contribution -0.653 0.445 1.426 1.630 sum -13.224 9.045 19.051 24.892 Atomic orbital electron populations 1.21958 0.77934 1.04374 1.02599 1.43729 1.05720 1.05647 1.56993 1.21674 0.90562 0.90995 1.11650 1.20831 0.95846 0.95118 1.10596 1.20474 0.95098 0.94774 1.09800 1.20373 0.90677 0.88153 1.10140 1.19480 0.92316 0.84546 0.91360 0.91008 1.22703 1.02613 0.96100 0.94573 1.22720 0.99000 0.96468 0.98594 1.22232 0.97079 0.91947 0.91255 1.47534 1.48030 1.33966 1.07523 1.15510 0.80412 0.82261 0.79668 1.90902 1.56505 1.36157 1.62539 1.45540 1.46030 1.34793 1.12894 1.21415 0.98974 1.00551 0.76459 1.19447 0.93222 0.93226 0.97785 1.21915 1.29020 1.18792 0.94164 0.92829 1.25879 0.93381 0.92892 1.06540 1.70771 1.42391 1.31630 1.09984 0.83473 0.76078 0.76162 0.74108 1.21354 1.20971 1.21345 0.91211 0.90028 0.90070 0.82459 0.85028 0.85609 0.89899 0.90050 0.89571 0.90447 0.90558 0.91399 0.77591 0.92626 0.92735 0.96943 0.96881 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 10.92 59.84 0.65 1.27 16 2 N -0.44 -5.59 3.15 -119.91 -0.38 -5.97 16 3 C -0.02 -0.24 11.43 -16.75 -0.19 -0.44 16 4 C -0.20 -2.84 10.86 -39.78 -0.43 -3.27 16 5 C -0.18 -2.74 10.20 -39.78 -0.41 -3.15 16 6 C 0.02 0.27 5.07 -81.79 -0.41 -0.15 16 7 C 0.23 2.86 3.08 -68.11 -0.21 2.65 16 8 H 0.07 0.92 6.96 -51.93 -0.36 0.56 16 9 C -0.12 -1.02 6.47 -24.89 -0.16 -1.18 16 10 C -0.13 -0.98 7.07 -24.70 -0.17 -1.15 16 11 C 0.10 1.02 6.56 -2.65 -0.02 1.00 16 12 N -0.63 -9.09 2.74 -170.15 -0.47 -9.56 16 13 C 0.72 13.76 8.14 -86.92 -0.71 13.05 16 14 O -0.58 -13.53 16.17 5.29 0.09 -13.44 16 15 N -0.74 -14.08 5.52 -65.22 -0.36 -14.44 16 16 C 0.15 3.39 5.61 -4.04 -0.02 3.37 16 17 C 0.00 0.02 4.40 -27.89 -0.12 -0.11 16 18 C -0.60 -17.29 9.11 -34.44 -0.31 -17.60 16 19 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 20 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 21 N -0.91 -27.71 13.65 55.43 0.76 -26.95 16 22 Si 1.07 25.54 29.90 -169.99 -5.08 20.46 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.69 6.97 -51.93 -0.36 0.33 16 29 H 0.16 1.47 8.06 -52.48 -0.42 1.04 16 30 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.13 2.00 8.06 -52.48 -0.42 1.57 16 32 H 0.08 0.72 7.85 -51.93 -0.41 0.31 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.76 7.31 -51.93 -0.38 0.38 16 37 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.39 6.46 6.96 -40.82 -0.28 6.18 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.01 0.32 8.01 -51.92 -0.42 -0.09 16 42 H 0.01 0.34 8.01 -51.93 -0.42 -0.08 16 43 H 0.27 8.03 7.22 -40.82 -0.29 7.74 16 LS Contribution 353.15 15.07 5.32 5.32 Total: -1.00 -36.17 353.15 -9.51 -45.68 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -6.77 Total: 4.20 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -2.62 Total: -5.30 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.45 Total: -56.92 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.09 Total: -13.44 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -5.08 Total: 20.46 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.17 -9.51 -45.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273279777.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.878 kcal (2) G-P(sol) polarization free energy of solvation -36.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds