Wall clock time and date at job start Tue Mar 31 2020 07:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36339 * 125.63848 * 2 1 4 4 C 1.34846 * 108.22141 * 180.02562 * 3 2 1 5 5 C 1.40892 * 107.41549 * 359.77304 * 4 3 2 6 6 C 1.34846 * 107.41829 * 0.37239 * 5 4 3 7 7 C 1.50700 * 125.89164 * 179.88390 * 6 5 4 8 8 H 1.08998 * 109.87699 * 205.12904 * 7 6 5 9 9 C 1.54329 * 110.00892 * 84.03797 * 7 6 5 10 10 C 1.55163 * 102.93864 * 218.31796 * 9 7 6 11 11 C 1.54688 * 101.67918 * 35.33314 * 10 9 7 12 12 N 1.47015 * 109.88367 * 326.15263 * 7 6 5 13 13 C 1.34784 * 125.64701 * 298.47150 * 12 7 6 14 14 O 1.21582 * 120.00012 * 0.02562 * 13 12 7 15 15 N 1.34771 * 119.99815 * 180.02562 * 13 12 7 16 16 C 1.46506 * 119.99985 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47380 * 179.97438 * 16 15 13 18 18 C 1.50696 * 109.47110 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00012 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99842 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00069 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99806 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46845 * 90.00621 * 22 20 18 24 24 H 1.48503 * 109.47399 * 210.00111 * 22 20 18 25 25 H 1.48498 * 109.47295 * 330.00717 * 22 20 18 26 26 H 1.09005 * 109.47198 * 269.97714 * 1 2 3 27 27 H 1.08995 * 109.47445 * 29.97614 * 1 2 3 28 28 H 1.08999 * 109.47539 * 149.97527 * 1 2 3 29 29 H 1.08005 * 125.88599 * 0.05826 * 3 2 1 30 30 H 1.07999 * 126.29543 * 180.02562 * 4 3 2 31 31 H 1.08008 * 126.28912 * 180.24315 * 5 4 3 32 32 H 1.08998 * 110.71876 * 336.67748 * 9 7 6 33 33 H 1.08991 * 110.72320 * 99.77525 * 9 7 6 34 34 H 1.08999 * 111.00189 * 153.57569 * 10 9 7 35 35 H 1.08996 * 111.00372 * 277.42022 * 10 9 7 36 36 H 1.08990 * 110.39323 * 204.36244 * 11 10 9 37 37 H 1.09009 * 110.23291 * 82.11021 * 11 10 9 38 38 H 0.97001 * 120.00536 * 359.97438 * 15 13 12 39 39 H 1.09005 * 109.46528 * 59.99939 * 16 15 13 40 40 H 1.08996 * 109.47073 * 300.00635 * 16 15 13 41 41 H 1.09008 * 109.46748 * 60.00194 * 17 16 15 42 42 H 1.08991 * 109.47440 * 300.00398 * 17 16 15 43 43 H 0.97000 * 119.99838 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2593 1.1080 0.0000 4 6 3.5460 0.7044 -0.0006 5 6 3.5459 -0.7045 0.0044 6 6 2.2593 -1.1081 -0.0006 7 6 1.7818 -2.5375 -0.0004 8 1 0.7861 -2.5956 -0.4399 9 6 1.7511 -3.0838 1.4427 10 6 2.2375 -4.5471 1.2706 11 6 3.2779 -4.3998 0.1354 12 7 2.7157 -3.3768 -0.7650 13 6 3.0055 -3.2377 -2.0740 14 8 2.4757 -2.3571 -2.7237 15 7 3.8824 -4.0749 -2.6626 16 6 4.1970 -3.9241 -4.0855 17 6 5.2120 -4.9916 -4.4994 18 6 5.5350 -4.8368 -5.9632 19 1 5.0638 -4.0551 -6.5405 20 6 6.4321 -5.6933 -6.5654 21 7 7.0054 -6.6456 -5.8626 22 14 6.8330 -5.5011 -8.3798 23 1 7.9874 -4.5802 -8.5366 24 1 7.1759 -6.8269 -8.9542 25 1 5.6547 -4.9433 -9.0907 26 1 -0.3634 -0.0004 1.0277 27 1 -0.3634 0.8901 -0.5134 28 1 -0.3634 -0.8897 -0.5142 29 1 1.9171 2.1324 0.0009 30 1 4.4165 1.3436 -0.0003 31 1 4.4165 -1.3438 0.0090 32 1 2.4332 -2.5232 2.0818 33 1 0.7382 -3.0559 1.8441 34 1 2.7037 -4.9138 2.1851 35 1 1.4186 -5.1975 0.9635 36 1 3.3996 -5.3450 -0.3933 37 1 4.2330 -4.0650 0.5405 38 1 4.3054 -4.7772 -2.1442 39 1 4.6188 -2.9345 -4.2615 40 1 3.2864 -4.0407 -4.6732 41 1 4.7905 -5.9813 -4.3233 42 1 6.1224 -4.8746 -3.9117 43 1 6.7975 -6.7452 -4.9204 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273279777.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:24 Heat of formation + Delta-G solvation = -4.760579 kcal Electronic energy + Delta-G solvation = -23477.233155 eV Core-core repulsion = 20136.163511 eV Total energy + Delta-G solvation = -3341.069644 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.37996 -41.06618 -38.68710 -36.79055 -35.07482 -33.73896 -32.83724 -31.80539 -30.72117 -28.00888 -27.19115 -26.46207 -24.56162 -23.28876 -22.32386 -21.69154 -21.21543 -20.12577 -19.15914 -18.66345 -18.12429 -17.39652 -16.68738 -16.23376 -16.11550 -15.75248 -15.59970 -15.11608 -15.09603 -14.46525 -14.31823 -14.11488 -13.96211 -13.84623 -13.64786 -13.40560 -13.16789 -12.96949 -12.92926 -12.80685 -12.38169 -12.31013 -12.21055 -12.07967 -11.88796 -11.68060 -11.40658 -10.81313 -10.59135 -10.27170 -9.66512 -9.48901 -8.89366 -8.73564 -6.44236 1.20350 1.52929 1.58428 1.62063 1.80991 2.04526 2.08775 2.19816 2.54819 3.02825 3.12249 3.54626 3.64325 3.79235 3.96426 4.08256 4.14606 4.26941 4.30166 4.31608 4.42276 4.50831 4.63677 4.64357 4.65677 4.69472 4.71837 4.86906 4.91641 5.04132 5.07210 5.19406 5.30861 5.33557 5.36555 5.39468 5.43128 5.91630 5.92982 6.10532 6.12300 6.29132 6.51942 6.52828 6.93746 7.35378 7.51001 8.68908 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.021622 B = 0.003445 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.647326 B = 8125.103285 C = 8847.394174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.448 5.448 3 C -0.015 4.015 4 C -0.230 4.230 5 C -0.211 4.211 6 C 0.010 3.990 7 C 0.220 3.780 8 H 0.069 0.931 9 C -0.109 4.109 10 C -0.116 4.116 11 C 0.086 3.914 12 N -0.626 5.626 13 C 0.716 3.284 14 O -0.630 6.630 15 N -0.734 5.734 16 C 0.170 3.830 17 C 0.011 3.989 18 C -0.624 4.624 19 H 0.048 0.952 20 C -0.031 4.031 21 N -0.931 5.931 22 Si 1.120 2.880 23 H -0.272 1.272 24 H -0.278 1.278 25 H -0.272 1.272 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.191 0.809 30 H 0.138 0.862 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.404 0.596 39 H 0.037 0.963 40 H 0.042 0.958 41 H 0.007 0.993 42 H 0.004 0.996 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.163 8.668 20.786 26.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.123 5.123 3 C -0.145 4.145 4 C -0.254 4.254 5 C -0.236 4.236 6 C -0.103 4.103 7 C 0.115 3.885 8 H 0.087 0.913 9 C -0.147 4.147 10 C -0.154 4.154 11 C -0.036 4.036 12 N -0.363 5.363 13 C 0.418 3.582 14 O -0.511 6.511 15 N -0.389 5.389 16 C 0.046 3.954 17 C -0.027 4.027 18 C -0.662 4.662 19 H 0.067 0.933 20 C -0.229 4.229 21 N -0.568 5.568 22 Si 0.941 3.059 23 H -0.198 1.198 24 H -0.204 1.204 25 H -0.197 1.197 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.096 0.904 29 H 0.208 0.792 30 H 0.155 0.845 31 H 0.127 0.873 32 H 0.100 0.900 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.239 0.761 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.026 0.974 42 H 0.023 0.977 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.030 8.678 18.997 25.160 hybrid contribution -0.243 0.446 1.107 1.218 sum -14.273 9.124 20.104 26.290 Atomic orbital electron populations 1.22268 0.75410 1.05043 1.04750 1.44060 1.07356 1.05079 1.55822 1.22184 0.90050 0.92421 1.09838 1.21089 0.97284 0.94883 1.12180 1.20532 0.95453 0.95521 1.12104 1.20588 0.90649 0.89377 1.09683 1.19853 0.91326 0.83798 0.93525 0.91325 1.22698 1.04403 0.96144 0.91461 1.22734 0.98294 0.96060 0.98297 1.22583 0.98401 0.90936 0.91702 1.47551 1.47710 1.34844 1.06240 1.15628 0.79947 0.81503 0.81109 1.90855 1.58078 1.37884 1.64290 1.45213 1.46541 1.35558 1.11580 1.20877 0.97417 0.98514 0.78592 1.19272 0.93370 0.93622 0.96418 1.22311 1.29279 1.18803 0.95784 0.93341 1.27380 0.92918 0.92080 1.10504 1.70890 1.43419 1.32740 1.09765 0.82888 0.76940 0.76751 0.69295 1.19765 1.20350 1.19735 0.88249 0.88412 0.90440 0.79171 0.84458 0.87345 0.89994 0.87182 0.86728 0.89515 0.90095 0.90900 0.76081 0.94432 0.93943 0.97445 0.97739 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.95 10.92 127.77 1.39 2.34 16 2 N -0.45 -10.69 3.15 -533.27 -1.68 -12.37 16 3 C -0.01 -0.35 11.43 83.21 0.95 0.60 16 4 C -0.23 -6.67 10.86 22.14 0.24 -6.43 16 5 C -0.21 -6.77 10.20 22.14 0.23 -6.55 16 6 C 0.01 0.29 5.07 41.08 0.21 0.50 16 7 C 0.22 5.27 3.08 44.60 0.14 5.41 16 8 H 0.07 1.69 6.96 -2.39 -0.02 1.67 16 9 C -0.11 -1.52 6.47 31.79 0.21 -1.31 16 10 C -0.12 -1.37 7.07 31.91 0.23 -1.15 16 11 C 0.09 1.66 6.56 86.78 0.57 2.23 16 12 N -0.63 -17.87 2.74 -810.49 -2.22 -20.08 16 13 C 0.72 27.99 8.14 179.05 1.46 29.44 16 14 O -0.63 -30.11 16.17 -3.97 -0.06 -30.18 16 15 N -0.73 -28.64 5.52 -478.53 -2.64 -31.28 16 16 C 0.17 8.03 5.61 86.38 0.48 8.52 16 17 C 0.01 0.56 4.40 29.85 0.13 0.69 16 18 C -0.62 -36.44 9.11 25.60 0.23 -36.20 16 19 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 20 C -0.03 -1.77 5.46 84.65 0.46 -1.31 16 21 N -0.93 -56.96 13.65 21.45 0.29 -56.67 16 22 Si 1.12 50.89 29.90 68.60 2.05 52.94 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 24 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.08 1.19 6.97 -2.39 -0.02 1.17 16 29 H 0.19 3.09 8.06 -2.91 -0.02 3.07 16 30 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 31 H 0.11 3.68 8.06 -2.91 -0.02 3.66 16 32 H 0.08 1.21 7.85 -2.39 -0.02 1.19 16 33 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.08 1.50 7.31 -2.39 -0.02 1.48 16 37 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.40 13.51 6.96 -92.71 -0.64 12.86 16 39 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.01 0.39 8.01 -2.38 -0.02 0.37 16 42 H 0.00 0.23 8.01 -2.39 -0.02 0.22 16 43 H 0.26 15.79 7.22 -92.71 -0.67 15.12 16 Total: -1.00 -80.45 353.15 3.12 -77.33 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.45 Total: 23.54 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 6.93 Total: -3.22 kcal Atomic # 7 Polarization: -114.16 SS G_CDS: -6.24 Total: -120.41 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.06 Total: -30.18 kcal Atomic # 14 Polarization: 50.89 SS G_CDS: 2.05 Total: 52.94 kcal Total: -80.45 3.12 -77.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273279777.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.565 kcal (2) G-P(sol) polarization free energy of solvation -80.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds