Wall clock time and date at job start Tue Mar 31 2020 07:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35893 * 117.00028 * 2 1 4 4 C 1.38730 * 120.05369 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94364 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.05978 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.94769 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47305 * 90.00159 * 7 6 5 9 9 N 1.46499 * 109.47274 * 179.97438 * 8 7 6 10 10 C 1.37484 * 119.99963 * 179.97438 * 9 8 7 11 11 N 1.37483 * 120.00058 * 0.02562 * 10 9 8 12 12 N 1.30340 * 119.99842 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99816 * 173.76324 * 12 10 9 14 14 C 1.52999 * 109.47360 * 114.27537 * 13 12 10 15 15 C 1.50698 * 109.47403 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00058 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99873 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00253 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00001 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.47088 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47348 * 119.99863 * 19 17 15 22 22 H 1.48500 * 109.47451 * 240.00134 * 19 17 15 23 23 C 1.38268 * 120.10899 * 0.25847 * 6 5 4 24 24 C 1.38153 * 120.05257 * 359.44248 * 23 6 5 25 25 H 1.08999 * 109.47078 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46735 * 300.00355 * 1 2 3 27 27 H 1.09003 * 109.46724 * 59.99632 * 1 2 3 28 28 H 1.08005 * 120.03115 * 359.97438 * 4 3 2 29 29 H 1.08009 * 119.97151 * 180.02562 * 5 4 3 30 30 H 1.09006 * 109.46837 * 210.00368 * 7 6 5 31 31 H 1.08999 * 109.47324 * 329.99745 * 7 6 5 32 32 H 1.08997 * 109.47386 * 299.99951 * 8 7 6 33 33 H 1.09004 * 109.47043 * 59.99990 * 8 7 6 34 34 H 0.96995 * 120.00332 * 0.02562 * 9 8 7 35 35 H 0.96997 * 119.99879 * 5.04618 * 11 10 9 36 36 H 0.97002 * 119.99962 * 185.04456 * 11 10 9 37 37 H 1.09006 * 109.46966 * 234.27192 * 13 12 10 38 38 H 1.08999 * 109.47349 * 354.27017 * 13 12 10 39 39 H 1.08998 * 109.46826 * 300.00096 * 14 13 12 40 40 H 1.08999 * 109.47314 * 59.99459 * 14 13 12 41 41 H 0.97000 * 120.00343 * 180.02562 * 18 17 15 42 42 H 1.08000 * 119.97371 * 179.70512 * 23 6 5 43 43 H 1.08001 * 120.02504 * 180.25228 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 0.0005 5 6 4.0561 2.5168 0.0011 6 6 3.3021 3.6757 0.0016 7 6 3.9863 5.0184 0.0028 8 6 4.2183 5.4738 -1.4393 9 7 4.8829 6.7794 -1.4381 10 6 5.1958 7.3925 -2.6282 11 7 4.8845 6.7807 -3.8194 12 7 5.7875 8.5538 -2.6272 13 6 6.2437 9.1446 -3.8878 14 6 5.4422 10.4159 -4.1749 15 6 5.9111 11.0232 -5.4719 16 1 6.7019 10.5501 -6.0350 17 6 5.3304 12.1829 -5.9397 18 7 4.3677 12.7594 -5.2538 19 14 5.9120 12.9362 -7.5471 20 1 6.9991 12.1022 -8.1198 21 1 4.7780 12.9974 -8.5040 22 1 6.4216 14.3080 -7.2952 23 6 1.9212 3.6047 0.0070 24 6 1.2916 2.3751 0.0002 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 4.0209 0.3798 0.0014 29 1 5.1347 2.5748 0.0011 30 1 3.3581 5.7458 0.5170 31 1 4.9440 4.9377 0.5169 32 1 4.8465 4.7464 -1.9534 33 1 3.2605 5.5545 -1.9534 34 1 5.1029 7.2109 -0.5978 35 1 4.3796 5.9525 -3.8218 36 1 5.1698 7.1772 -4.6574 37 1 7.3025 9.3922 -3.8108 38 1 6.0955 8.4309 -4.6982 39 1 4.3836 10.1682 -4.2518 40 1 5.5904 11.1296 -3.3645 41 1 3.9589 13.5750 -5.5831 42 1 1.3344 4.5114 0.0122 43 1 0.2130 2.3202 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273381773.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:45 Heat of formation + Delta-G solvation = 10.565426 kcal Electronic energy + Delta-G solvation = -21528.824625 eV Core-core repulsion = 18188.419567 eV Total energy + Delta-G solvation = -3340.405058 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.52921 -38.57066 -37.84270 -35.06481 -33.28726 -31.97993 -31.43328 -31.27695 -29.25470 -28.26595 -27.05441 -24.57328 -23.22073 -22.93612 -21.27840 -21.01600 -19.29264 -18.53670 -17.32612 -16.70293 -16.61244 -16.14481 -15.94268 -15.43680 -15.12584 -14.83271 -14.59507 -14.40287 -14.07003 -13.77443 -13.38064 -13.10210 -13.02282 -12.57242 -12.35287 -12.24924 -12.11039 -11.70419 -11.51208 -11.27024 -11.13959 -11.03078 -10.90013 -10.52079 -9.98258 -9.52429 -9.36204 -9.06433 -8.78898 -8.45959 -8.35735 -8.18351 -7.06328 -5.90224 -3.93024 0.98193 1.03372 2.86894 3.27189 3.35717 3.42559 3.44976 3.47096 3.62621 4.37468 4.39548 4.49482 4.52902 4.64192 4.69514 4.70818 4.83679 4.86262 5.00761 5.03000 5.13595 5.24778 5.35969 5.44548 5.59344 5.71133 5.74279 5.91475 5.99109 6.11567 6.30174 6.39353 6.49470 6.83854 6.87864 6.99228 7.21439 7.47134 7.77099 7.84283 8.02864 8.15728 8.42301 8.57122 9.15061 9.32006 9.70207 11.20801 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.033538 B = 0.002028 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.673487 B =13804.460309 C =14086.016202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.122 3.878 4 C -0.151 4.151 5 C -0.074 4.074 6 C -0.116 4.116 7 C -0.085 4.085 8 C 0.133 3.867 9 N -0.734 5.734 10 C 0.602 3.398 11 N -0.899 5.899 12 N -0.655 5.655 13 C 0.086 3.914 14 C 0.029 3.971 15 C -0.519 4.519 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.894 5.894 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.073 4.073 24 C -0.206 4.206 25 H 0.099 0.901 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.412 0.588 35 H 0.382 0.618 36 H 0.411 0.589 37 H 0.056 0.944 38 H 0.014 0.986 39 H 0.009 0.991 40 H 0.022 0.978 41 H 0.258 0.742 42 H 0.127 0.873 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.478 -27.678 12.990 31.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.077 3.923 4 C -0.169 4.169 5 C -0.092 4.092 6 C -0.117 4.117 7 C -0.123 4.123 8 C 0.008 3.992 9 N -0.380 5.380 10 C 0.236 3.764 11 N -0.459 5.459 12 N -0.395 5.395 13 C -0.044 4.044 14 C -0.009 4.009 15 C -0.558 4.558 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.091 4.091 24 C -0.225 4.225 25 H 0.118 0.882 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.249 0.751 35 H 0.209 0.791 36 H 0.246 0.754 37 H 0.074 0.926 38 H 0.032 0.968 39 H 0.028 0.972 40 H 0.040 0.960 41 H 0.068 0.932 42 H 0.145 0.855 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.258 -27.115 13.488 31.142 hybrid contribution -0.379 0.169 -1.701 1.751 sum -7.637 -26.945 11.787 30.386 Atomic orbital electron populations 1.23066 0.78298 1.03982 1.01459 1.86066 1.21471 1.27048 1.88737 1.19070 0.92436 0.84155 0.96624 1.20432 0.91352 0.98727 1.06404 1.20911 0.99987 0.90915 0.97349 1.19618 0.93482 0.94740 1.03843 1.20655 1.01339 0.93702 0.96600 1.21185 0.96804 0.84688 0.96551 1.43675 1.68414 1.20626 1.05307 1.18816 0.90402 0.87256 0.79924 1.43141 1.65260 1.30171 1.07327 1.72392 1.29055 1.08186 1.29885 1.21782 0.99009 0.96763 0.86825 1.19092 0.94574 0.91201 0.96004 1.21309 1.19269 1.08681 1.06547 0.92749 1.25029 0.95155 0.97065 0.97285 1.70001 1.25350 1.19496 1.38492 0.86551 0.78542 0.79183 0.83781 1.19776 1.21143 1.21031 1.20907 0.93995 0.97198 0.96969 1.21242 1.00087 0.92329 1.08842 0.88226 0.92616 0.92536 0.85198 0.85125 0.90085 0.90072 0.92429 0.92537 0.75073 0.79119 0.75407 0.92578 0.96829 0.97215 0.96008 0.93185 0.85508 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.68 10.50 -19.40 -0.20 -2.88 16 3 C 0.12 1.06 6.69 -39.22 -0.26 0.80 16 4 C -0.15 -1.23 9.99 -39.43 -0.39 -1.63 16 5 C -0.07 -0.56 9.69 -39.61 -0.38 -0.94 16 6 C -0.12 -0.90 5.13 -104.60 -0.54 -1.44 16 7 C -0.09 -0.63 5.46 -27.89 -0.15 -0.78 16 8 C 0.13 1.24 5.04 -4.05 -0.02 1.22 16 9 N -0.73 -9.47 5.67 -61.80 -0.35 -9.82 16 10 C 0.60 10.39 8.63 -320.09 -2.76 7.63 16 11 N -0.90 -13.33 8.77 30.14 0.26 -13.06 16 12 N -0.66 -14.19 10.62 -61.77 -0.66 -14.84 16 13 C 0.09 2.05 6.21 -4.04 -0.03 2.02 16 14 C 0.03 0.83 5.30 -27.88 -0.15 0.68 16 15 C -0.52 -15.46 9.11 -34.44 -0.31 -15.78 16 16 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -28.13 13.29 55.43 0.74 -27.39 16 19 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 22 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 23 C -0.07 -0.56 9.69 -39.60 -0.38 -0.95 16 24 C -0.21 -1.60 9.04 -39.43 -0.36 -1.96 16 25 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 27 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 28 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 29 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 30 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 31 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 32 H 0.06 0.52 8.06 -51.93 -0.42 0.10 16 33 H 0.06 0.54 7.94 -51.93 -0.41 0.13 16 34 H 0.41 5.10 8.59 -40.82 -0.35 4.75 16 35 H 0.38 4.42 7.38 -40.82 -0.30 4.12 16 36 H 0.41 6.59 6.21 -40.82 -0.25 6.33 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.01 0.30 5.45 -51.93 -0.28 0.01 16 39 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.13 0.75 6.30 -52.49 -0.33 0.42 16 LS Contribution 359.16 15.07 5.41 5.41 Total: -1.00 -35.73 359.16 -11.15 -46.88 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -6.49 Total: 6.85 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -4.84 Total: -8.44 kcal Atomic # 7 Polarization: -65.12 SS G_CDS: -0.01 Total: -65.12 kcal Atomic # 8 Polarization: -2.68 SS G_CDS: -0.20 Total: -2.88 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.73 -11.15 -46.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273381773.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.440 kcal (2) G-P(sol) polarization free energy of solvation -35.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds