Wall clock time and date at job start Tue Mar 31 2020 07:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 120.00224 * 2 1 4 4 C 1.50699 * 109.46673 * 269.99840 * 3 2 1 5 5 H 1.07991 * 120.00645 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99442 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99539 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 120.00194 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.47033 * 89.99768 * 8 6 4 10 10 H 1.48504 * 109.46888 * 209.99818 * 8 6 4 11 11 H 1.48503 * 109.46928 * 329.99616 * 8 6 4 12 12 C 1.38995 * 120.00178 * 179.97438 * 2 1 3 13 13 C 1.39202 * 120.05602 * 184.72345 * 12 2 1 14 14 N 1.32008 * 120.03302 * 179.70472 * 13 12 2 15 15 C 1.32121 * 120.14470 * 0.57813 * 14 13 12 16 16 C 1.38902 * 120.11324 * 359.70461 * 15 14 13 17 17 O 1.35673 * 120.01701 * 179.97438 * 16 15 14 18 18 C 1.42906 * 116.99685 * 180.02562 * 17 16 15 19 19 C 1.53004 * 109.46816 * 179.97438 * 18 17 16 20 20 C 1.54266 * 110.03323 * 292.91063 * 19 18 17 21 21 C 1.54965 * 104.15864 * 217.14047 * 20 19 18 22 22 C 1.54883 * 102.77978 * 37.88608 * 21 20 19 23 23 C 1.53878 * 110.02965 * 175.69151 * 19 18 17 24 24 N 1.32611 * 119.96054 * 0.02562 * 16 15 14 25 25 H 1.09001 * 109.47306 * 269.99883 * 1 2 3 26 26 H 1.08998 * 109.47019 * 30.00729 * 1 2 3 27 27 H 1.09000 * 109.47194 * 150.00102 * 1 2 3 28 28 H 1.09005 * 109.46767 * 29.99736 * 3 2 1 29 29 H 1.08996 * 109.47165 * 149.99564 * 3 2 1 30 30 H 0.97002 * 119.99649 * 179.97438 * 7 6 4 31 31 H 1.07994 * 119.98403 * 359.97438 * 13 12 2 32 32 H 1.08007 * 119.94236 * 179.72166 * 15 14 13 33 33 H 1.08994 * 109.47228 * 300.00512 * 18 17 16 34 34 H 1.09004 * 109.46809 * 60.00036 * 18 17 16 35 35 H 1.08996 * 110.01549 * 54.30325 * 19 18 17 36 36 H 1.08999 * 110.48450 * 335.78076 * 20 19 18 37 37 H 1.08997 * 110.48564 * 98.43033 * 20 19 18 38 38 H 1.09007 * 110.71504 * 279.57212 * 21 20 19 39 39 H 1.08992 * 110.92661 * 156.29612 * 21 20 19 40 40 H 1.09005 * 110.48874 * 203.41216 * 22 21 20 41 41 H 1.09003 * 110.60160 * 80.82010 * 22 21 20 42 42 H 1.08991 * 110.03086 * 238.57267 * 23 19 18 43 43 H 1.09003 * 110.02923 * 0.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.3458 3.2572 -2.9127 8 14 3.7331 3.9292 -0.2529 9 1 5.1066 3.5080 0.1229 10 1 3.7480 5.3559 -0.6645 11 1 2.8271 3.7592 0.9114 12 6 2.1600 -1.2037 0.0005 13 6 3.5485 -1.2070 0.0998 14 7 4.2077 -2.3507 0.1061 15 6 3.5533 -3.4942 0.0069 16 6 2.1683 -3.4978 -0.0983 17 8 1.4984 -4.6731 -0.2006 18 6 0.0750 -4.6015 -0.3060 19 6 -0.5002 -6.0153 -0.4121 20 6 -0.0764 -6.6594 -1.7483 21 6 -1.3165 -7.4805 -2.1834 22 6 -2.4960 -6.5713 -1.7580 23 6 -2.0380 -5.9596 -0.4179 24 7 1.5013 -2.3516 -0.0997 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1384 0.5139 30 1 3.8220 4.0835 -3.0900 31 1 4.0863 -0.2737 0.1760 32 1 4.0963 -4.4279 0.0079 33 1 -0.3304 -4.1092 0.5779 34 1 -0.1952 -4.0320 -1.1952 35 1 -0.1518 -6.6235 0.4226 36 1 0.1504 -5.8908 -2.4872 37 1 0.7828 -7.3137 -1.6008 38 1 -1.3530 -8.4332 -1.6549 39 1 -1.3200 -7.6384 -3.2618 40 1 -3.4016 -7.1616 -1.6181 41 1 -2.6627 -5.7881 -2.4977 42 1 -2.4358 -6.5414 0.4135 43 1 -2.3743 -4.9253 -0.3456 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274566316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:51 Heat of formation + Delta-G solvation = 6.241929 kcal Electronic energy + Delta-G solvation = -23100.836836 eV Core-core repulsion = 19760.244297 eV Total energy + Delta-G solvation = -3340.592539 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.72318 -39.02416 -37.56772 -36.28117 -33.34333 -32.45005 -30.97162 -29.41094 -28.88035 -28.64080 -26.07516 -24.80425 -23.46420 -22.74298 -21.00537 -20.82939 -19.82365 -18.02143 -17.33722 -17.08252 -16.34067 -16.14050 -15.73118 -15.41498 -15.23093 -14.59040 -14.24163 -14.01762 -13.59286 -13.44744 -13.12123 -12.76315 -12.57411 -12.29800 -11.95113 -11.60275 -11.53799 -11.47283 -11.34825 -11.24461 -11.17015 -10.89968 -10.85675 -10.76281 -10.68475 -10.62794 -10.54393 -10.20568 -9.66365 -8.79249 -8.76431 -8.67173 -6.93134 -6.23925 -4.26593 1.61727 1.82800 3.08856 3.17216 3.23580 3.25421 3.50892 4.24131 4.33088 4.37643 4.38329 4.53143 4.78065 5.02771 5.03993 5.10392 5.12181 5.18825 5.23188 5.30636 5.40201 5.45310 5.58831 5.65614 5.66689 5.68233 5.79474 5.86801 5.90226 5.93674 5.98566 6.06500 6.10083 6.20692 6.26471 6.43930 6.54047 6.63911 7.26182 7.36260 7.41675 7.88892 8.05410 8.32956 8.47821 8.81773 9.33657 10.88796 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.023854 B = 0.003428 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.543093 B = 8165.030651 C = 8635.618433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.573 5.573 3 C 0.220 3.780 4 C -0.544 4.544 5 H 0.077 0.923 6 C 0.077 3.923 7 N -0.889 5.889 8 Si 0.872 3.128 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.264 1.264 12 C 0.412 3.588 13 C -0.039 4.039 14 N -0.375 5.375 15 C -0.060 4.060 16 C 0.321 3.679 17 O -0.302 6.302 18 C 0.078 3.922 19 C -0.093 4.093 20 C -0.117 4.117 21 C -0.127 4.127 22 C -0.125 4.125 23 C -0.117 4.117 24 N -0.574 5.574 25 H 0.040 0.960 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.040 0.960 29 H 0.033 0.967 30 H 0.267 0.733 31 H 0.172 0.828 32 H 0.160 0.840 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.271 -16.927 6.034 20.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.281 5.281 3 C 0.099 3.901 4 C -0.582 4.582 5 H 0.096 0.904 6 C -0.127 4.127 7 N -0.526 5.526 8 Si 0.698 3.302 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.189 1.189 12 C 0.171 3.829 13 C -0.208 4.208 14 N -0.088 5.088 15 C -0.222 4.222 16 C 0.138 3.862 17 O -0.208 6.208 18 C 0.002 3.998 19 C -0.111 4.111 20 C -0.155 4.155 21 C -0.164 4.164 22 C -0.163 4.163 23 C -0.155 4.155 24 N -0.314 5.314 25 H 0.059 0.941 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.189 0.811 32 H 0.178 0.822 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.222 -16.866 5.918 20.112 hybrid contribution 0.058 0.916 0.470 1.031 sum -9.164 -15.950 6.388 19.473 Atomic orbital electron populations 1.21510 0.79767 1.02906 1.00191 1.46775 1.05633 1.02762 1.72912 1.19883 0.92070 0.79565 0.98563 1.21368 1.37939 1.07815 0.91120 0.90445 1.24876 0.95091 0.97111 0.95625 1.69891 1.40568 1.23424 1.18734 0.86915 0.80143 0.80296 0.82818 1.19568 1.20789 1.18885 1.19048 0.89595 0.85605 0.88634 1.23080 0.90829 0.97553 1.09366 1.68201 1.37872 0.97542 1.05193 1.22172 0.88644 0.97703 1.13634 1.20537 0.90140 0.84444 0.91097 1.86223 1.21635 1.25810 1.87143 1.22767 0.77905 0.96874 1.02217 1.21841 0.95087 0.94897 0.99310 1.22425 0.97675 0.99236 0.96130 1.22529 0.94789 0.98305 1.00780 1.22366 0.97997 0.98981 0.96936 1.22112 0.93720 1.01579 0.98063 1.67412 1.39823 0.97430 1.26689 0.94121 0.90991 0.91365 0.94261 0.94953 0.92261 0.81071 0.82234 0.91879 0.91590 0.90133 0.91306 0.91274 0.91600 0.91591 0.91706 0.91480 0.91352 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.71 10.51 59.85 0.63 2.34 16 2 N -0.57 -11.69 2.97 -182.99 -0.54 -12.23 16 3 C 0.22 4.87 4.07 -5.19 -0.02 4.85 16 4 C -0.54 -14.52 9.94 -34.44 -0.34 -14.87 16 5 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 6 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 7 N -0.89 -26.09 13.96 55.43 0.77 -25.32 16 8 Si 0.87 19.80 27.47 -169.99 -4.67 15.13 16 9 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.26 -5.63 6.54 56.52 0.37 -5.26 16 12 C 0.41 8.39 7.37 -154.73 -1.14 7.25 16 13 C -0.04 -0.79 10.42 -17.12 -0.18 -0.97 16 14 N -0.37 -7.30 10.48 -12.74 -0.13 -7.43 16 15 C -0.06 -1.05 11.16 -17.18 -0.19 -1.24 16 16 C 0.32 5.61 7.49 -16.97 -0.13 5.49 16 17 O -0.30 -4.55 9.96 -18.72 -0.19 -4.73 16 18 C 0.08 0.99 4.37 37.16 0.16 1.15 16 19 C -0.09 -0.92 3.19 -89.50 -0.29 -1.20 16 20 C -0.12 -1.13 6.22 -25.03 -0.16 -1.28 16 21 C -0.13 -1.00 6.91 -24.70 -0.17 -1.17 16 22 C -0.13 -0.97 6.83 -25.07 -0.17 -1.14 16 23 C -0.12 -0.97 6.46 -25.61 -0.17 -1.14 16 24 N -0.57 -10.83 8.15 -12.31 -0.10 -10.93 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 27 H 0.07 1.14 7.32 -51.93 -0.38 0.76 16 28 H 0.04 0.84 7.13 -51.93 -0.37 0.47 16 29 H 0.03 0.70 5.43 -51.93 -0.28 0.42 16 30 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 31 H 0.17 3.52 6.03 -52.49 -0.32 3.20 16 32 H 0.16 2.30 8.06 -52.48 -0.42 1.88 16 33 H 0.06 0.81 8.11 -51.93 -0.42 0.39 16 34 H 0.07 0.90 7.99 -51.93 -0.41 0.49 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.75 7.77 -51.93 -0.40 0.34 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.59 7.67 -51.93 -0.40 0.19 16 LS Contribution 349.22 15.07 5.26 5.26 Total: -1.00 -29.53 349.22 -8.65 -38.19 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -6.80 Total: 2.01 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -2.26 Total: 0.06 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 0.00 Total: -55.91 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.19 Total: -4.73 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.67 Total: 15.13 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.53 -8.65 -38.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274566316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.428 kcal (2) G-P(sol) polarization free energy of solvation -29.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds