Wall clock time and date at job start Tue Mar 31 2020 07:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 120.00224 * 2 1 4 4 C 1.50699 * 109.46673 * 269.99840 * 3 2 1 5 5 H 1.07991 * 120.00645 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99442 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99539 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 120.00194 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.47033 * 89.99768 * 8 6 4 10 10 H 1.48504 * 109.46888 * 209.99818 * 8 6 4 11 11 H 1.48503 * 109.46928 * 329.99616 * 8 6 4 12 12 C 1.38995 * 120.00178 * 179.97438 * 2 1 3 13 13 C 1.39202 * 120.05602 * 184.72345 * 12 2 1 14 14 N 1.32008 * 120.03302 * 179.70472 * 13 12 2 15 15 C 1.32121 * 120.14470 * 0.57813 * 14 13 12 16 16 C 1.38902 * 120.11324 * 359.70461 * 15 14 13 17 17 O 1.35673 * 120.01701 * 179.97438 * 16 15 14 18 18 C 1.42906 * 116.99685 * 180.02562 * 17 16 15 19 19 C 1.53004 * 109.46816 * 179.97438 * 18 17 16 20 20 C 1.54266 * 110.03323 * 292.91063 * 19 18 17 21 21 C 1.54965 * 104.15864 * 217.14047 * 20 19 18 22 22 C 1.54883 * 102.77978 * 37.88608 * 21 20 19 23 23 C 1.53878 * 110.02965 * 175.69151 * 19 18 17 24 24 N 1.32611 * 119.96054 * 0.02562 * 16 15 14 25 25 H 1.09001 * 109.47306 * 269.99883 * 1 2 3 26 26 H 1.08998 * 109.47019 * 30.00729 * 1 2 3 27 27 H 1.09000 * 109.47194 * 150.00102 * 1 2 3 28 28 H 1.09005 * 109.46767 * 29.99736 * 3 2 1 29 29 H 1.08996 * 109.47165 * 149.99564 * 3 2 1 30 30 H 0.97002 * 119.99649 * 179.97438 * 7 6 4 31 31 H 1.07994 * 119.98403 * 359.97438 * 13 12 2 32 32 H 1.08007 * 119.94236 * 179.72166 * 15 14 13 33 33 H 1.08994 * 109.47228 * 300.00512 * 18 17 16 34 34 H 1.09004 * 109.46809 * 60.00036 * 18 17 16 35 35 H 1.08996 * 110.01549 * 54.30325 * 19 18 17 36 36 H 1.08999 * 110.48450 * 335.78076 * 20 19 18 37 37 H 1.08997 * 110.48564 * 98.43033 * 20 19 18 38 38 H 1.09007 * 110.71504 * 279.57212 * 21 20 19 39 39 H 1.08992 * 110.92661 * 156.29612 * 21 20 19 40 40 H 1.09005 * 110.48874 * 203.41216 * 22 21 20 41 41 H 1.09003 * 110.60160 * 80.82010 * 22 21 20 42 42 H 1.08991 * 110.03086 * 238.57267 * 23 19 18 43 43 H 1.09003 * 110.02923 * 0.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.3458 3.2572 -2.9127 8 14 3.7331 3.9292 -0.2529 9 1 5.1066 3.5080 0.1229 10 1 3.7480 5.3559 -0.6645 11 1 2.8271 3.7592 0.9114 12 6 2.1600 -1.2037 0.0005 13 6 3.5485 -1.2070 0.0998 14 7 4.2077 -2.3507 0.1061 15 6 3.5533 -3.4942 0.0069 16 6 2.1683 -3.4978 -0.0983 17 8 1.4984 -4.6731 -0.2006 18 6 0.0750 -4.6015 -0.3060 19 6 -0.5002 -6.0153 -0.4121 20 6 -0.0764 -6.6594 -1.7483 21 6 -1.3165 -7.4805 -2.1834 22 6 -2.4960 -6.5713 -1.7580 23 6 -2.0380 -5.9596 -0.4179 24 7 1.5013 -2.3516 -0.0997 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1384 0.5139 30 1 3.8220 4.0835 -3.0900 31 1 4.0863 -0.2737 0.1760 32 1 4.0963 -4.4279 0.0079 33 1 -0.3304 -4.1092 0.5779 34 1 -0.1952 -4.0320 -1.1952 35 1 -0.1518 -6.6235 0.4226 36 1 0.1504 -5.8908 -2.4872 37 1 0.7828 -7.3137 -1.6008 38 1 -1.3530 -8.4332 -1.6549 39 1 -1.3200 -7.6384 -3.2618 40 1 -3.4016 -7.1616 -1.6181 41 1 -2.6627 -5.7881 -2.4977 42 1 -2.4358 -6.5414 0.4135 43 1 -2.3743 -4.9253 -0.3456 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274566316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:51 Heat of formation + Delta-G solvation = -11.550617 kcal Electronic energy + Delta-G solvation = -23101.608379 eV Core-core repulsion = 19760.244297 eV Total energy + Delta-G solvation = -3341.364082 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.16219 -40.09954 -38.61124 -37.77702 -35.06585 -34.25618 -32.03280 -30.67871 -30.44077 -29.57352 -27.50786 -25.94697 -25.17834 -24.13054 -22.54711 -21.57223 -20.64285 -19.37054 -19.13316 -18.75281 -17.71086 -17.37620 -17.05648 -16.58314 -16.30528 -16.15769 -15.66644 -15.31378 -14.81310 -14.53491 -14.43717 -14.21267 -14.02400 -13.61132 -13.47407 -13.22423 -12.84304 -12.63462 -12.42592 -12.33600 -12.30223 -12.23927 -12.00803 -11.92389 -11.90084 -11.73001 -11.60187 -11.51464 -11.31838 -10.82693 -10.25149 -10.18186 -8.47728 -8.32771 -6.41824 0.13213 0.32835 1.39817 1.41236 1.50509 1.79154 2.04638 2.32564 2.84187 3.00719 3.34365 3.57654 3.61628 3.63613 3.67236 3.83551 4.20150 4.23503 4.34835 4.39940 4.49531 4.52113 4.55507 4.61312 4.66665 4.70044 4.77103 4.80757 4.84730 4.85891 4.91068 5.01751 5.08297 5.16158 5.24593 5.32039 5.38970 5.43326 5.48095 5.71743 5.98785 6.21418 6.39486 6.57088 6.64976 6.96506 7.23813 8.83579 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.023854 B = 0.003428 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.543093 B = 8165.030651 C = 8635.618433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.585 5.585 3 C 0.229 3.771 4 C -0.545 4.545 5 H 0.024 0.976 6 C 0.016 3.984 7 N -0.944 5.944 8 Si 0.946 3.054 9 H -0.263 1.263 10 H -0.283 1.283 11 H -0.234 1.234 12 C 0.397 3.603 13 C -0.063 4.063 14 N -0.385 5.385 15 C -0.052 4.052 16 C 0.321 3.679 17 O -0.296 6.296 18 C 0.077 3.923 19 C -0.088 4.088 20 C -0.120 4.120 21 C -0.122 4.122 22 C -0.125 4.125 23 C -0.115 4.115 24 N -0.574 5.574 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.269 0.731 31 H 0.164 0.836 32 H 0.193 0.807 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.084 0.916 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.985 -18.307 8.205 22.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.294 5.294 3 C 0.107 3.893 4 C -0.584 4.584 5 H 0.042 0.958 6 C -0.182 4.182 7 N -0.583 5.583 8 Si 0.768 3.232 9 H -0.188 1.188 10 H -0.209 1.209 11 H -0.157 1.157 12 C 0.158 3.842 13 C -0.231 4.231 14 N -0.098 5.098 15 C -0.215 4.215 16 C 0.136 3.864 17 O -0.201 6.201 18 C 0.002 3.998 19 C -0.106 4.106 20 C -0.158 4.158 21 C -0.160 4.160 22 C -0.163 4.163 23 C -0.153 4.153 24 N -0.314 5.314 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.181 0.819 32 H 0.210 0.790 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.103 0.897 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.968 -18.264 8.103 22.330 hybrid contribution 0.226 1.125 -0.311 1.189 sum -9.742 -17.139 7.792 21.199 Atomic orbital electron populations 1.21615 0.78123 1.02686 1.01764 1.46757 1.06668 1.02234 1.73703 1.19665 0.93228 0.80825 0.95564 1.21539 1.37399 1.07202 0.92247 0.95786 1.25866 0.95134 0.98637 0.98608 1.70062 1.42225 1.24365 1.21662 0.85743 0.80198 0.77618 0.79659 1.18770 1.20885 1.15729 1.19113 0.89721 0.86063 0.89346 1.22994 0.91062 0.97812 1.11221 1.68194 1.38289 0.97869 1.05458 1.22728 0.88963 0.98200 1.11617 1.20761 0.90646 0.84712 0.90234 1.86251 1.22981 1.24369 1.86525 1.22968 0.76494 0.98847 1.01520 1.21877 0.96102 0.92927 0.99700 1.22434 0.98721 0.99056 0.95597 1.22522 0.93731 0.98522 1.01203 1.22383 0.98599 0.98937 0.96368 1.22131 0.92332 1.01766 0.99045 1.67427 1.40001 0.97483 1.26496 0.91494 0.91394 0.91421 0.92538 0.93778 0.92167 0.81872 0.79036 0.91882 0.92953 0.89325 0.93099 0.91146 0.90341 0.91256 0.90120 0.92233 0.89724 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.38 10.51 127.77 1.34 4.72 16 2 N -0.58 -23.76 2.97 -732.86 -2.18 -25.94 16 3 C 0.23 10.02 4.07 85.63 0.35 10.37 16 4 C -0.55 -29.93 9.94 25.60 0.25 -29.67 16 5 H 0.02 1.53 8.06 -2.92 -0.02 1.51 16 6 C 0.02 0.90 5.47 84.66 0.46 1.37 16 7 N -0.94 -57.30 13.96 21.45 0.30 -57.00 16 8 Si 0.95 40.45 27.47 68.60 1.88 42.33 16 9 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.23 -8.84 6.54 99.48 0.65 -8.19 16 12 C 0.40 16.19 7.37 132.99 0.98 17.17 16 13 C -0.06 -2.61 10.42 84.90 0.88 -1.72 16 14 N -0.38 -14.75 10.48 -194.23 -2.04 -16.79 16 15 C -0.05 -1.74 11.16 84.81 0.95 -0.79 16 16 C 0.32 10.87 7.49 84.73 0.63 11.50 16 17 O -0.30 -8.48 9.96 -89.90 -0.90 -9.38 16 18 C 0.08 1.87 4.37 71.98 0.31 2.19 16 19 C -0.09 -1.58 3.19 -10.07 -0.03 -1.61 16 20 C -0.12 -2.16 6.22 31.70 0.20 -1.97 16 21 C -0.12 -1.69 6.91 31.91 0.22 -1.47 16 22 C -0.13 -1.70 6.83 31.67 0.22 -1.48 16 23 C -0.12 -1.67 6.46 31.32 0.20 -1.47 16 24 N -0.57 -21.41 8.15 -305.56 -2.49 -23.90 16 25 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.07 2.29 8.07 -2.39 -0.02 2.28 16 27 H 0.07 2.24 7.32 -2.39 -0.02 2.22 16 28 H 0.06 2.30 7.13 -2.38 -0.02 2.28 16 29 H 0.04 1.85 5.43 -2.39 -0.01 1.84 16 30 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 31 H 0.16 6.81 6.03 -2.91 -0.02 6.79 16 32 H 0.19 5.01 8.06 -2.91 -0.02 4.99 16 33 H 0.06 1.54 8.11 -2.39 -0.02 1.52 16 34 H 0.05 1.42 7.99 -2.39 -0.02 1.40 16 35 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.05 1.09 7.77 -2.39 -0.02 1.07 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.06 1.00 7.67 -2.39 -0.02 0.98 16 Total: -1.00 -65.46 349.22 2.49 -62.97 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.93 Total: 20.59 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 6.97 Total: 7.12 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -6.40 Total: -123.63 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -0.90 Total: -9.38 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 1.88 Total: 42.33 kcal Total: -65.46 2.49 -62.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274566316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.416 kcal (2) G-P(sol) polarization free energy of solvation -65.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds