Wall clock time and date at job start Tue Mar 31 2020 07:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46506 * 120.00001 * 2 1 4 4 C 1.50701 * 109.47002 * 269.99935 * 3 2 1 5 5 H 1.08003 * 119.99951 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99859 * 179.97438 * 4 3 2 7 7 N 1.31507 * 120.00137 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99850 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47276 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47058 * 119.99978 * 8 6 4 11 11 H 1.48500 * 109.47177 * 240.00059 * 8 6 4 12 12 C 1.38990 * 120.00386 * 179.97438 * 2 1 3 13 13 C 1.39209 * 120.05378 * 4.99846 * 12 2 1 14 14 N 1.31997 * 120.03524 * 179.97438 * 13 12 2 15 15 C 1.32121 * 120.14942 * 0.02562 * 14 13 12 16 16 C 1.38896 * 120.10721 * 359.97438 * 15 14 13 17 17 O 1.35685 * 120.01536 * 179.97438 * 16 15 14 18 18 C 1.42901 * 116.99899 * 180.02562 * 17 16 15 19 19 C 1.53004 * 109.46881 * 270.00236 * 18 17 16 20 20 C 1.53007 * 109.46877 * 180.02562 * 19 18 17 21 21 C 1.53005 * 109.46913 * 59.99947 * 20 19 18 22 22 C 1.53005 * 109.47023 * 299.99712 * 21 20 19 23 23 C 1.52996 * 109.46823 * 150.00016 * 18 17 16 24 24 N 1.32616 * 119.96951 * 0.27465 * 16 15 14 25 25 H 1.08997 * 109.47225 * 270.00243 * 1 2 3 26 26 H 1.09004 * 109.46866 * 30.00444 * 1 2 3 27 27 H 1.08996 * 109.46479 * 150.00025 * 1 2 3 28 28 H 1.08997 * 109.46833 * 29.99941 * 3 2 1 29 29 H 1.09003 * 109.47442 * 149.99716 * 3 2 1 30 30 H 0.96999 * 120.00480 * 180.02562 * 7 6 4 31 31 H 1.08006 * 119.98064 * 0.02562 * 13 12 2 32 32 H 1.08002 * 119.94329 * 180.02562 * 15 14 13 33 33 H 1.08997 * 109.47305 * 29.99997 * 18 17 16 34 34 H 1.08997 * 109.46956 * 299.99975 * 19 18 17 35 35 H 1.08992 * 109.47400 * 60.00249 * 19 18 17 36 36 H 1.09002 * 109.47199 * 300.00234 * 20 19 18 37 37 H 1.08994 * 109.47166 * 179.97438 * 20 19 18 38 38 H 1.09003 * 109.46767 * 179.97438 * 21 20 19 39 39 H 1.08997 * 109.47306 * 59.99812 * 21 20 19 40 40 H 1.08997 * 109.47161 * 300.00188 * 22 21 20 41 41 H 1.09001 * 109.46779 * 179.97438 * 22 21 20 42 42 H 1.08992 * 109.47624 * 299.99901 * 23 18 17 43 43 H 1.09007 * 109.47226 * 60.00452 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1260 2.8780 -1.6728 7 7 3.5524 3.6186 -0.6732 8 14 3.4380 3.4168 -3.4340 9 1 2.8609 2.4163 -4.3674 10 1 2.7999 4.7372 -3.6681 11 1 4.9006 3.5257 -3.6666 12 6 2.1600 -1.2036 0.0005 13 6 1.4692 -2.4077 -0.1039 14 7 2.1296 -3.5505 -0.1039 15 6 3.4471 -3.5556 -0.0043 16 6 4.1425 -2.3578 0.1002 17 8 5.4954 -2.3652 0.2029 18 6 6.1450 -1.0967 0.3075 19 6 6.4862 -0.5814 -1.0922 20 6 7.1823 0.7765 -0.9801 21 6 8.4682 0.6246 -0.1650 22 6 8.1270 0.1094 1.2347 23 6 7.4308 -1.2479 1.1228 24 7 3.4831 -1.2072 0.1056 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3632 -0.8900 -0.5138 28 1 1.6084 2.0284 0.5138 29 1 3.1500 1.1385 0.5139 30 1 4.0286 4.4449 -0.8504 31 1 0.3922 -2.4066 -0.1858 32 1 3.9842 -4.4926 -0.0050 33 1 5.4814 -0.3884 0.8036 34 1 7.1498 -1.2897 -1.5882 35 1 5.5702 -0.4737 -1.6729 36 1 6.5191 1.4849 -0.4837 37 1 7.4258 1.1434 -1.9771 38 1 8.9644 1.5920 -0.0855 39 1 9.1315 -0.0838 -0.6612 40 1 7.4637 0.8178 1.7310 41 1 9.0431 0.0008 1.8152 42 1 7.1878 -1.6150 2.1199 43 1 8.0945 -1.9561 0.6267 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274618640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:47 Heat of formation + Delta-G solvation = -15.459748 kcal Electronic energy + Delta-G solvation = -24342.378790 eV Core-core repulsion = 21000.845196 eV Total energy + Delta-G solvation = -3341.533594 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.13265 -40.29792 -38.23549 -37.50160 -34.86788 -34.39172 -31.81158 -31.64427 -30.55097 -29.47964 -27.27217 -25.83718 -24.68571 -23.63310 -22.98387 -22.61206 -20.81842 -19.29260 -18.81894 -18.47549 -17.66279 -16.92554 -16.84954 -16.69865 -16.38351 -15.64603 -15.38799 -15.06173 -14.97490 -14.68270 -14.23740 -14.05504 -13.88105 -13.68941 -13.42901 -13.21584 -13.09278 -12.85044 -12.77630 -12.62126 -12.35607 -12.24566 -12.18144 -12.11175 -11.90610 -11.60437 -11.58708 -11.34657 -11.06506 -10.63154 -10.14871 -9.97115 -8.55882 -8.11510 -6.33972 0.20110 0.43059 1.31116 1.33728 1.43841 1.91585 2.12592 2.36732 2.92931 3.08460 3.41126 3.61522 3.65055 3.71913 3.73641 3.98641 4.20045 4.23056 4.31481 4.36818 4.44557 4.47320 4.49036 4.54796 4.65766 4.68844 4.85245 4.90484 4.96400 5.02029 5.04255 5.15494 5.18348 5.21268 5.27403 5.30345 5.34258 5.48445 5.63257 5.93980 6.07716 6.16016 6.36804 6.73615 6.75084 7.11070 7.35141 8.84595 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.009578 B = 0.008571 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.648846 B = 3266.018017 C = 5499.750027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.592 5.592 3 C 0.272 3.728 4 C -0.532 4.532 5 H 0.043 0.957 6 C 0.024 3.976 7 N -0.918 5.918 8 Si 0.948 3.052 9 H -0.275 1.275 10 H -0.272 1.272 11 H -0.279 1.279 12 C 0.391 3.609 13 C -0.067 4.067 14 N -0.378 5.378 15 C -0.056 4.056 16 C 0.313 3.687 17 O -0.298 6.298 18 C 0.091 3.909 19 C -0.121 4.121 20 C -0.114 4.114 21 C -0.112 4.112 22 C -0.112 4.112 23 C -0.105 4.105 24 N -0.574 5.574 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.015 0.985 29 H 0.014 0.986 30 H 0.265 0.735 31 H 0.191 0.809 32 H 0.191 0.809 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.030 0.970 36 H 0.035 0.965 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.047 0.953 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.912 -9.341 2.735 10.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.301 5.301 3 C 0.151 3.849 4 C -0.571 4.571 5 H 0.061 0.939 6 C -0.176 4.176 7 N -0.557 5.557 8 Si 0.773 3.227 9 H -0.199 1.199 10 H -0.198 1.198 11 H -0.204 1.204 12 C 0.150 3.850 13 C -0.236 4.236 14 N -0.091 5.091 15 C -0.218 4.218 16 C 0.129 3.871 17 O -0.203 6.203 18 C 0.035 3.965 19 C -0.159 4.159 20 C -0.152 4.152 21 C -0.150 4.150 22 C -0.150 4.150 23 C -0.142 4.142 24 N -0.312 5.312 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.109 0.891 28 H 0.033 0.967 29 H 0.032 0.968 30 H 0.074 0.926 31 H 0.208 0.792 32 H 0.208 0.792 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.066 0.934 41 H 0.117 0.883 42 H 0.092 0.908 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.078 -9.181 2.800 10.859 hybrid contribution -0.075 1.231 -0.976 1.573 sum 5.003 -7.950 1.823 9.569 Atomic orbital electron populations 1.21914 0.76791 1.03968 1.02447 1.47088 1.06586 1.03104 1.73341 1.18765 0.91242 0.79190 0.95710 1.21591 1.36486 1.06242 0.92796 0.93884 1.25556 0.95105 0.96380 1.00598 1.70022 1.38895 1.14592 1.32228 0.85670 0.78068 0.78305 0.80644 1.19936 1.19758 1.20435 1.19421 0.87569 0.88465 0.89522 1.23164 1.02189 0.86154 1.12049 1.68180 1.07499 1.28090 1.05343 1.22599 0.89949 0.96877 1.12394 1.20961 0.85368 0.90385 0.90379 1.86237 1.14055 1.33600 1.86443 1.22421 0.94129 0.82880 0.97075 1.21782 0.99823 0.97932 0.96361 1.21418 0.97543 0.95639 1.00593 1.21552 0.95921 1.02175 0.95326 1.21501 1.00972 0.95048 0.97470 1.21599 0.93667 0.99261 0.99702 1.67529 1.09423 1.29279 1.25011 0.91303 0.90989 0.89147 0.96659 0.96793 0.92569 0.79240 0.79230 0.92560 0.90001 0.95143 0.94625 0.91990 0.90902 0.89898 0.93420 0.88265 0.90768 0.89232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.77 10.29 127.77 1.31 4.09 16 2 N -0.59 -24.93 2.97 -732.85 -2.18 -27.11 16 3 C 0.27 14.09 5.23 85.63 0.45 14.54 16 4 C -0.53 -29.59 9.39 25.60 0.24 -29.35 16 5 H 0.04 2.45 7.81 -2.91 -0.02 2.43 16 6 C 0.02 1.30 5.46 84.66 0.46 1.77 16 7 N -0.92 -52.94 13.29 21.45 0.28 -52.65 16 8 Si 0.95 44.04 29.54 68.60 2.03 46.07 16 9 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 C 0.39 16.16 7.37 132.99 0.98 17.14 16 13 C -0.07 -2.33 10.42 84.90 0.88 -1.44 16 14 N -0.38 -12.93 10.48 -194.24 -2.04 -14.97 16 15 C -0.06 -1.87 11.16 84.81 0.95 -0.92 16 16 C 0.31 12.07 7.45 84.73 0.63 12.70 16 17 O -0.30 -10.51 9.77 -90.03 -0.88 -11.39 16 18 C 0.09 3.17 2.39 30.59 0.07 3.24 16 19 C -0.12 -4.27 5.54 30.60 0.17 -4.10 16 20 C -0.11 -3.84 5.92 30.60 0.18 -3.66 16 21 C -0.11 -2.75 5.92 30.60 0.18 -2.57 16 22 C -0.11 -2.65 5.92 30.58 0.18 -2.47 16 23 C -0.10 -2.67 5.57 30.58 0.17 -2.50 16 24 N -0.57 -25.34 7.57 -305.54 -2.31 -27.65 16 25 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 26 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 27 H 0.09 2.20 6.00 -2.39 -0.01 2.19 16 28 H 0.02 0.83 8.07 -2.39 -0.02 0.81 16 29 H 0.01 0.81 7.31 -2.39 -0.02 0.79 16 30 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 31 H 0.19 5.15 6.03 -2.91 -0.02 5.14 16 32 H 0.19 5.05 8.06 -2.91 -0.02 5.02 16 33 H 0.06 2.39 6.99 -2.39 -0.02 2.38 16 34 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 Total: -1.00 -65.80 349.19 2.75 -63.04 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.99 Total: 18.21 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 6.86 Total: 6.45 kcal Atomic # 7 Polarization: -116.14 SS G_CDS: -6.24 Total: -122.38 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -0.88 Total: -11.39 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -65.80 2.75 -63.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274618640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.582 kcal (2) G-P(sol) polarization free energy of solvation -65.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds