Wall clock time and date at job start Tue Mar 31 2020 07:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35045 * 126.39849 * 2 1 4 4 N 1.30495 * 108.69990 * 179.82112 * 3 2 1 5 5 C 1.34128 * 109.25774 * 0.44365 * 4 3 2 6 6 C 1.34669 * 108.01780 * 359.72199 * 5 4 3 7 7 C 1.50703 * 126.59045 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.46620 * 84.95969 * 7 6 5 9 9 C 1.50703 * 109.46968 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00101 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99928 * 179.97438 * 9 8 7 12 12 C 1.46506 * 120.00045 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47141 * 90.00260 * 12 11 9 14 14 H 1.07999 * 119.99749 * 0.02562 * 13 12 11 15 15 C 1.37868 * 120.00093 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99952 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00110 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47020 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47100 * 120.00020 * 17 15 13 20 20 H 1.48500 * 109.47335 * 240.00156 * 17 15 13 21 21 C 1.46506 * 120.00307 * 0.02562 * 11 9 8 22 22 C 1.52997 * 109.47187 * 89.99669 * 21 11 9 23 23 C 1.53009 * 117.49634 * 243.62475 * 22 21 11 24 24 C 1.53001 * 117.49854 * 175.00490 * 22 21 11 25 25 H 1.09002 * 109.47391 * 269.69091 * 1 2 3 26 26 H 1.09001 * 109.46813 * 149.69147 * 1 2 3 27 27 H 1.09004 * 109.47041 * 29.69274 * 1 2 3 28 28 H 1.07997 * 125.64821 * 359.97332 * 3 2 1 29 29 H 1.08000 * 125.99029 * 179.72614 * 5 4 3 30 30 H 1.08996 * 109.47055 * 204.96012 * 7 6 5 31 31 H 1.09006 * 109.47116 * 324.96560 * 7 6 5 32 32 H 1.08996 * 109.47442 * 299.99806 * 8 7 6 33 33 H 1.09000 * 109.47248 * 60.00249 * 8 7 6 34 34 H 1.08994 * 109.47210 * 210.00537 * 12 11 9 35 35 H 1.08997 * 109.46863 * 330.00285 * 12 11 9 36 36 H 0.97009 * 119.99756 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.47017 * 209.99410 * 21 11 9 38 38 H 1.09000 * 109.46465 * 329.99257 * 21 11 9 39 39 H 1.08997 * 115.55191 * 29.32419 * 22 21 11 40 40 H 1.09001 * 117.49465 * 359.97438 * 23 22 21 41 41 H 1.08999 * 117.49846 * 145.01935 * 23 22 21 42 42 H 1.09000 * 117.49785 * 214.97805 * 24 22 21 43 43 H 1.08997 * 117.49819 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6903 0.0039 5 6 3.5461 -0.6505 -0.0034 6 6 2.2772 -1.1018 -0.0058 7 6 1.8363 -2.5428 -0.0131 8 6 1.8081 -3.0746 1.4213 9 6 1.3666 -4.5155 1.4142 10 8 1.1011 -5.0632 0.3652 11 7 1.2677 -5.1957 2.5735 12 6 0.8390 -6.5966 2.5665 13 6 2.0454 -7.4904 2.4371 14 1 3.0327 -7.0582 2.3673 15 6 1.8887 -8.8599 2.4076 16 7 0.6864 -9.3862 2.4920 17 14 3.3842 -9.9679 2.2478 18 1 4.6112 -9.1351 2.1702 19 1 3.4662 -10.8622 3.4304 20 1 3.2639 -10.7871 1.0151 21 6 1.5889 -4.5342 3.8406 22 6 0.3267 -3.8841 4.4108 23 6 0.3170 -2.3601 4.5473 24 6 0.4277 -3.2393 5.7946 25 1 -0.3634 -0.0055 1.0276 26 1 -0.3633 -0.8872 -0.5186 27 1 -0.3633 0.8928 -0.5091 28 1 1.9334 2.1144 -0.0004 29 1 4.4369 -1.2611 -0.0066 30 1 0.8392 -2.6155 -0.4472 31 1 2.5348 -3.1335 -0.6059 32 1 2.8052 -3.0019 1.8554 33 1 1.1097 -2.4839 2.0141 34 1 0.3182 -6.8218 3.4971 35 1 0.1684 -6.7671 1.7244 36 1 0.5762 -10.3497 2.4709 37 1 1.9698 -5.2704 4.5484 38 1 2.3461 -3.7692 3.6693 39 1 -0.6123 -4.3723 4.1503 40 1 1.2100 -1.8209 4.2312 41 1 -0.6285 -1.8456 4.3765 42 1 -0.4451 -3.3030 6.4445 43 1 1.3932 -3.2786 6.2990 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276596585.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:26 Heat of formation + Delta-G solvation = 43.659387 kcal Electronic energy + Delta-G solvation = -23390.435241 eV Core-core repulsion = 20051.465245 eV Total energy + Delta-G solvation = -3338.969996 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.12902 -39.26834 -37.23223 -34.59978 -34.18259 -33.43192 -32.49562 -29.12589 -27.69745 -27.10392 -26.19048 -24.40540 -22.34686 -22.27948 -21.46084 -20.69516 -19.82789 -18.36188 -17.22534 -16.49750 -16.44876 -15.81711 -15.39413 -15.28742 -14.84590 -14.55117 -14.23045 -13.92280 -13.69142 -13.16503 -13.08947 -12.88985 -12.83895 -12.45499 -12.34100 -12.05741 -11.75656 -11.49566 -11.41920 -11.21370 -11.02068 -10.85238 -10.62954 -10.36527 -10.10486 -9.96877 -9.85463 -9.64604 -9.60645 -8.94844 -8.44344 -8.32408 -7.69308 -6.05087 -4.09577 1.97394 2.69497 3.13440 3.29693 3.36589 3.39082 3.43747 3.76965 3.99302 4.44273 4.52726 4.61255 4.64838 4.86792 4.88680 4.97949 5.01550 5.09684 5.17767 5.22123 5.29297 5.35170 5.45917 5.51732 5.63282 5.66076 5.74100 5.83864 5.90451 5.96443 6.07132 6.13584 6.19121 6.40404 6.43225 6.72588 7.05271 7.11823 7.42981 7.53604 7.91599 8.02801 8.22901 8.40707 8.89684 9.08164 9.55837 11.03048 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015953 B = 0.004191 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.766092 B = 6679.717268 C = 7645.005004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.459 5.459 3 C 0.170 3.830 4 N -0.495 5.495 5 C -0.029 4.029 6 C -0.013 4.013 7 C -0.029 4.029 8 C -0.134 4.134 9 C 0.507 3.493 10 O -0.543 6.543 11 N -0.594 5.594 12 C 0.246 3.754 13 C -0.525 4.525 14 H 0.058 0.942 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.142 3.858 22 C -0.163 4.163 23 C -0.186 4.186 24 C -0.176 4.176 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.202 0.798 29 H 0.169 0.831 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.032 0.968 35 H 0.043 0.957 36 H 0.262 0.738 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.097 19.445 1.403 19.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.143 5.143 3 C -0.111 4.111 4 N -0.212 5.212 5 C -0.177 4.177 6 C -0.127 4.127 7 C -0.068 4.068 8 C -0.175 4.175 9 C 0.294 3.706 10 O -0.421 6.421 11 N -0.325 5.325 12 C 0.126 3.874 13 C -0.564 4.564 14 H 0.076 0.924 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C 0.017 3.983 22 C -0.183 4.183 23 C -0.223 4.223 24 C -0.213 4.213 25 H 0.096 0.904 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.218 0.782 29 H 0.186 0.814 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.126 0.874 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.807 19.470 0.859 19.573 hybrid contribution -0.071 -1.112 0.126 1.122 sum -1.877 18.358 0.985 18.480 Atomic orbital electron populations 1.22060 0.76773 1.04723 1.03771 1.45312 1.07544 1.06787 1.54611 1.24853 0.85768 0.93323 1.07205 1.70251 1.19413 1.12157 1.19430 1.22088 0.95907 0.90948 1.08741 1.21417 0.91216 0.89911 1.10173 1.19785 1.03157 0.86960 0.96851 1.21709 1.03274 0.94766 0.97737 1.20285 0.78478 0.87698 0.84147 1.90670 1.50295 1.70442 1.30705 1.48186 1.65704 1.14103 1.04490 1.19282 0.95873 0.73996 0.98207 1.21471 0.93425 0.91069 1.50420 0.92389 1.24928 0.96060 0.98014 0.95084 1.69945 1.21207 1.11798 1.50473 0.86456 0.82889 0.80509 0.77661 1.19761 1.20988 1.20890 1.21017 0.93551 0.96732 0.86963 1.22937 1.01463 0.94394 0.99493 1.23031 1.02637 0.93557 1.03064 1.22896 1.03079 1.04502 0.90857 0.90402 0.89358 0.89538 0.78180 0.81412 0.90637 0.88661 0.89236 0.89641 0.95036 0.93924 0.92805 0.89487 0.91388 0.87432 0.88997 0.89368 0.88997 0.88712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 11.00 59.85 0.66 1.12 16 2 N -0.46 -4.75 3.15 -121.36 -0.38 -5.13 16 3 C 0.17 1.81 12.56 -90.38 -1.14 0.68 16 4 N -0.49 -6.81 11.25 -14.67 -0.17 -6.97 16 5 C -0.03 -0.39 11.79 -17.81 -0.21 -0.60 16 6 C -0.01 -0.16 6.21 -81.60 -0.51 -0.66 16 7 C -0.03 -0.38 4.84 -27.88 -0.13 -0.52 16 8 C -0.13 -1.90 4.23 -27.88 -0.12 -2.02 16 9 C 0.51 10.02 7.67 -10.99 -0.08 9.94 16 10 O -0.54 -13.07 15.56 5.56 0.09 -12.99 16 11 N -0.59 -12.08 2.46 -175.06 -0.43 -12.51 16 12 C 0.25 6.28 5.16 -5.19 -0.03 6.25 16 13 C -0.52 -14.70 9.39 -34.44 -0.32 -15.02 16 14 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.90 -26.40 13.29 55.43 0.74 -25.67 16 17 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 21 C 0.14 2.24 5.49 -4.04 -0.02 2.22 16 22 C -0.16 -2.20 5.95 -90.62 -0.54 -2.74 16 23 C -0.19 -1.99 9.18 -26.73 -0.25 -2.23 16 24 C -0.18 -1.93 10.25 -26.73 -0.27 -2.20 16 25 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.09 0.62 7.12 -51.93 -0.37 0.25 16 27 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.20 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.17 2.03 8.06 -52.49 -0.42 1.61 16 30 H 0.08 1.02 7.05 -51.93 -0.37 0.65 16 31 H 0.09 1.38 8.10 -51.93 -0.42 0.96 16 32 H 0.09 1.19 7.40 -51.93 -0.38 0.81 16 33 H 0.09 1.08 6.84 -51.93 -0.36 0.72 16 34 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.09 1.45 8.07 -51.93 -0.42 1.03 16 38 H 0.07 0.92 6.17 -51.93 -0.32 0.60 16 39 H 0.11 1.63 8.14 -51.93 -0.42 1.20 16 40 H 0.09 0.94 7.87 -51.93 -0.41 0.53 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 360.97 15.07 5.44 5.44 Total: -1.00 -34.44 360.97 -9.57 -44.01 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -6.78 Total: 1.24 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -3.06 Total: -4.16 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.24 Total: -50.29 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.09 Total: -12.99 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.44 -9.57 -44.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276596585.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.668 kcal (2) G-P(sol) polarization free energy of solvation -34.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds