Wall clock time and date at job start Tue Mar 31 2020 07:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35045 * 126.39849 * 2 1 4 4 N 1.30495 * 108.69990 * 179.82112 * 3 2 1 5 5 C 1.34128 * 109.25774 * 0.44365 * 4 3 2 6 6 C 1.34669 * 108.01780 * 359.72199 * 5 4 3 7 7 C 1.50703 * 126.59045 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.46620 * 84.95969 * 7 6 5 9 9 C 1.50703 * 109.46968 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00101 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99928 * 179.97438 * 9 8 7 12 12 C 1.46506 * 120.00045 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47141 * 90.00260 * 12 11 9 14 14 H 1.07999 * 119.99749 * 0.02562 * 13 12 11 15 15 C 1.37868 * 120.00093 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99952 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00110 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47020 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47100 * 120.00020 * 17 15 13 20 20 H 1.48500 * 109.47335 * 240.00156 * 17 15 13 21 21 C 1.46506 * 120.00307 * 0.02562 * 11 9 8 22 22 C 1.52997 * 109.47187 * 89.99669 * 21 11 9 23 23 C 1.53009 * 117.49634 * 243.62475 * 22 21 11 24 24 C 1.53001 * 117.49854 * 175.00490 * 22 21 11 25 25 H 1.09002 * 109.47391 * 269.69091 * 1 2 3 26 26 H 1.09001 * 109.46813 * 149.69147 * 1 2 3 27 27 H 1.09004 * 109.47041 * 29.69274 * 1 2 3 28 28 H 1.07997 * 125.64821 * 359.97332 * 3 2 1 29 29 H 1.08000 * 125.99029 * 179.72614 * 5 4 3 30 30 H 1.08996 * 109.47055 * 204.96012 * 7 6 5 31 31 H 1.09006 * 109.47116 * 324.96560 * 7 6 5 32 32 H 1.08996 * 109.47442 * 299.99806 * 8 7 6 33 33 H 1.09000 * 109.47248 * 60.00249 * 8 7 6 34 34 H 1.08994 * 109.47210 * 210.00537 * 12 11 9 35 35 H 1.08997 * 109.46863 * 330.00285 * 12 11 9 36 36 H 0.97009 * 119.99756 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.47017 * 209.99410 * 21 11 9 38 38 H 1.09000 * 109.46465 * 329.99257 * 21 11 9 39 39 H 1.08997 * 115.55191 * 29.32419 * 22 21 11 40 40 H 1.09001 * 117.49465 * 359.97438 * 23 22 21 41 41 H 1.08999 * 117.49846 * 145.01935 * 23 22 21 42 42 H 1.09000 * 117.49785 * 214.97805 * 24 22 21 43 43 H 1.08997 * 117.49819 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6903 0.0039 5 6 3.5461 -0.6505 -0.0034 6 6 2.2772 -1.1018 -0.0058 7 6 1.8363 -2.5428 -0.0131 8 6 1.8081 -3.0746 1.4213 9 6 1.3666 -4.5155 1.4142 10 8 1.1011 -5.0632 0.3652 11 7 1.2677 -5.1957 2.5735 12 6 0.8390 -6.5966 2.5665 13 6 2.0454 -7.4904 2.4371 14 1 3.0327 -7.0582 2.3673 15 6 1.8887 -8.8599 2.4076 16 7 0.6864 -9.3862 2.4920 17 14 3.3842 -9.9679 2.2478 18 1 4.6112 -9.1351 2.1702 19 1 3.4662 -10.8622 3.4304 20 1 3.2639 -10.7871 1.0151 21 6 1.5889 -4.5342 3.8406 22 6 0.3267 -3.8841 4.4108 23 6 0.3170 -2.3601 4.5473 24 6 0.4277 -3.2393 5.7946 25 1 -0.3634 -0.0055 1.0276 26 1 -0.3633 -0.8872 -0.5186 27 1 -0.3633 0.8928 -0.5091 28 1 1.9334 2.1144 -0.0004 29 1 4.4369 -1.2611 -0.0066 30 1 0.8392 -2.6155 -0.4472 31 1 2.5348 -3.1335 -0.6059 32 1 2.8052 -3.0019 1.8554 33 1 1.1097 -2.4839 2.0141 34 1 0.3182 -6.8218 3.4971 35 1 0.1684 -6.7671 1.7244 36 1 0.5762 -10.3497 2.4709 37 1 1.9698 -5.2704 4.5484 38 1 2.3461 -3.7692 3.6693 39 1 -0.6123 -4.3723 4.1503 40 1 1.2100 -1.8209 4.2312 41 1 -0.6285 -1.8456 4.3765 42 1 -0.4451 -3.3030 6.4445 43 1 1.3932 -3.2786 6.2990 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276596585.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:25 Heat of formation + Delta-G solvation = 24.238604 kcal Electronic energy + Delta-G solvation = -23391.277389 eV Core-core repulsion = 20051.465245 eV Total energy + Delta-G solvation = -3339.812145 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.98900 -40.81859 -38.39210 -36.21800 -35.15068 -34.64498 -34.36387 -30.51260 -29.24772 -27.75114 -27.61949 -25.93236 -24.00589 -23.19354 -22.30625 -21.83219 -20.73433 -19.87389 -18.61324 -18.28281 -17.56478 -17.19557 -16.70348 -16.56308 -16.04342 -15.92952 -15.55788 -14.92105 -14.71810 -14.47577 -14.30135 -13.94428 -13.81547 -13.77429 -13.60508 -13.46135 -13.15588 -12.92545 -12.85491 -12.57657 -12.49425 -12.31213 -12.22510 -12.13522 -11.69404 -11.25856 -10.92894 -10.88929 -10.64774 -10.54979 -10.43175 -9.43985 -9.27111 -8.22507 -6.37016 1.10364 1.36349 1.38646 1.50481 1.83750 1.95894 2.20904 2.31144 2.45166 2.95431 3.07270 3.52030 3.86465 3.92357 3.96328 4.01163 4.02993 4.04142 4.11841 4.24479 4.30869 4.45636 4.50451 4.58285 4.69218 4.74563 4.75667 4.82058 4.84589 4.96779 5.03206 5.05773 5.10549 5.23665 5.30739 5.32793 5.48413 5.57186 5.80250 5.85033 6.06765 6.37029 6.70280 6.80383 7.16227 7.28725 7.48835 8.84752 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015953 B = 0.004191 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.766092 B = 6679.717268 C = 7645.005004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.457 5.457 3 C 0.184 3.816 4 N -0.534 5.534 5 C -0.046 4.046 6 C -0.020 4.020 7 C -0.018 4.018 8 C -0.113 4.113 9 C 0.499 3.501 10 O -0.596 6.596 11 N -0.599 5.599 12 C 0.263 3.737 13 C -0.541 4.541 14 H 0.053 0.947 15 C 0.008 3.992 16 N -0.929 5.929 17 Si 0.966 3.034 18 H -0.267 1.267 19 H -0.270 1.270 20 H -0.282 1.282 21 C 0.142 3.858 22 C -0.190 4.190 23 C -0.163 4.163 24 C -0.164 4.164 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.116 0.884 28 H 0.241 0.759 29 H 0.168 0.832 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.019 0.981 35 H -0.002 1.002 36 H 0.267 0.733 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.550 22.044 2.441 22.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.139 5.139 3 C -0.099 4.099 4 N -0.253 5.253 5 C -0.193 4.193 6 C -0.136 4.136 7 C -0.058 4.058 8 C -0.153 4.153 9 C 0.289 3.711 10 O -0.477 6.477 11 N -0.328 5.328 12 C 0.141 3.859 13 C -0.580 4.580 14 H 0.072 0.928 15 C -0.191 4.191 16 N -0.568 5.568 17 Si 0.791 3.209 18 H -0.191 1.191 19 H -0.195 1.195 20 H -0.208 1.208 21 C 0.019 3.981 22 C -0.210 4.210 23 C -0.200 4.200 24 C -0.201 4.201 25 H 0.110 0.890 26 H 0.099 0.901 27 H 0.135 0.865 28 H 0.257 0.743 29 H 0.185 0.815 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.037 0.963 35 H 0.016 0.984 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.101 0.899 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.270 22.103 1.936 22.224 hybrid contribution -0.317 -1.864 -0.195 1.901 sum -1.587 20.240 1.741 20.376 Atomic orbital electron populations 1.22361 0.74530 1.05960 1.05091 1.45501 1.08861 1.05936 1.53618 1.25623 0.84978 0.94742 1.04517 1.70241 1.21425 1.12204 1.21405 1.22238 0.96453 0.91351 1.09268 1.21085 0.91382 0.89723 1.11384 1.19570 1.02522 0.87731 0.95935 1.21607 1.04311 0.90433 0.98947 1.21281 0.77206 0.89713 0.82943 1.90638 1.52508 1.72069 1.32520 1.48167 1.65456 1.12422 1.06803 1.18694 0.94448 0.77229 0.95487 1.21745 0.93740 0.91950 1.50563 0.92837 1.25836 0.99131 0.99583 0.94505 1.70061 1.23349 1.12361 1.51078 0.85387 0.79156 0.78448 0.77949 1.19082 1.19477 1.20761 1.21211 0.95575 0.96783 0.84517 1.22642 0.99061 0.96717 1.02540 1.23132 1.03991 0.91173 1.01666 1.23014 1.04140 1.02836 0.90115 0.88966 0.90077 0.86516 0.74289 0.81452 0.91010 0.90422 0.87637 0.87188 0.96264 0.98421 0.92449 0.91015 0.88514 0.89910 0.87607 0.87947 0.88076 0.87609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.62 11.00 127.77 1.41 2.03 16 2 N -0.46 -8.14 3.15 -537.88 -1.70 -9.84 16 3 C 0.18 3.32 12.56 180.26 2.26 5.59 16 4 N -0.53 -13.72 11.25 -200.32 -2.25 -15.97 16 5 C -0.05 -1.18 11.79 83.52 0.98 -0.19 16 6 C -0.02 -0.47 6.21 40.95 0.25 -0.22 16 7 C -0.02 -0.49 4.84 29.85 0.14 -0.34 16 8 C -0.11 -3.07 4.23 29.85 0.13 -2.94 16 9 C 0.50 20.21 7.67 87.66 0.67 20.88 16 10 O -0.60 -30.12 15.56 -3.03 -0.05 -30.17 16 11 N -0.60 -25.12 2.46 -826.14 -2.03 -27.15 16 12 C 0.26 14.22 5.16 85.63 0.44 14.66 16 13 C -0.54 -31.36 9.39 25.60 0.24 -31.12 16 14 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 15 C 0.01 0.48 5.46 84.65 0.46 0.94 16 16 N -0.93 -56.41 13.29 21.44 0.28 -56.12 16 17 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 C 0.14 4.41 5.49 86.38 0.47 4.89 16 22 C -0.19 -4.92 5.95 -10.79 -0.06 -4.98 16 23 C -0.16 -2.92 9.18 30.60 0.28 -2.64 16 24 C -0.16 -3.15 10.25 30.60 0.31 -2.84 16 25 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.08 0.97 7.12 -2.39 -0.02 0.95 16 27 H 0.12 0.48 8.14 -2.38 -0.02 0.46 16 28 H 0.24 2.07 8.06 -2.91 -0.02 2.05 16 29 H 0.17 4.05 8.06 -2.91 -0.02 4.02 16 30 H 0.07 1.93 7.05 -2.39 -0.02 1.91 16 31 H 0.08 2.31 8.10 -2.38 -0.02 2.29 16 32 H 0.11 2.59 7.40 -2.39 -0.02 2.57 16 33 H 0.11 2.47 6.84 -2.39 -0.02 2.45 16 34 H 0.02 1.07 8.07 -2.39 -0.02 1.05 16 35 H 0.00 -0.15 7.42 -2.39 -0.02 -0.16 16 36 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 37 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 38 H 0.10 2.42 6.17 -2.39 -0.01 2.40 16 39 H 0.08 2.56 8.14 -2.39 -0.02 2.55 16 40 H 0.11 1.66 7.87 -2.39 -0.02 1.64 16 41 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -78.74 360.97 5.27 -73.47 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.99 Total: 14.87 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 8.00 Total: 3.71 kcal Atomic # 7 Polarization: -103.39 SS G_CDS: -5.69 Total: -109.08 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.05 Total: -30.17 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -78.74 5.27 -73.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276596585.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.705 kcal (2) G-P(sol) polarization free energy of solvation -78.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds