Wall clock time and date at job start Tue Mar 31 2020 07:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31010 * 1 3 3 C 1.50694 * 119.99907 * 2 1 4 4 N 1.46498 * 109.47524 * 125.27730 * 3 2 1 5 5 C 1.46760 * 124.35189 * 89.99674 * 4 3 2 6 6 C 1.54485 * 105.47415 * 197.02312 * 5 4 3 7 7 C 1.54633 * 101.76160 * 334.58195 * 6 5 4 8 8 H 1.08997 * 110.48459 * 143.61280 * 7 6 5 9 9 N 1.46905 * 110.48551 * 266.12092 * 7 6 5 10 10 C 1.46898 * 110.99791 * 297.81270 * 9 7 6 11 11 C 1.46897 * 110.99715 * 173.85611 * 9 7 6 12 12 C 1.53002 * 109.46846 * 189.99978 * 11 9 7 13 13 H 1.09001 * 109.47315 * 304.99678 * 12 11 9 14 14 C 1.47196 * 109.47038 * 65.00177 * 12 11 9 15 15 N 7.01690 * 118.00072 * 13.43625 * 2 1 3 16 16 C 1.53001 * 109.47055 * 185.00226 * 12 11 9 17 17 C 1.50696 * 109.47287 * 174.99767 * 16 12 11 18 18 H 1.07997 * 119.99961 * 0.02562 * 17 16 12 19 19 C 1.37881 * 120.00140 * 179.97438 * 17 16 12 20 20 N 1.31514 * 120.00130 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99737 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.46968 * 90.00168 * 21 19 17 23 23 H 1.48507 * 109.46758 * 209.99613 * 21 19 17 24 24 H 1.48496 * 109.47583 * 329.99975 * 21 19 17 25 25 C 1.34426 * 124.34684 * 269.70163 * 4 3 2 26 26 O 1.21283 * 124.94238 * 359.57110 * 25 4 3 27 27 H 1.08000 * 119.99610 * 179.73054 * 1 2 3 28 28 H 1.07995 * 119.99626 * 359.72044 * 1 2 3 29 29 H 1.07994 * 119.99616 * 180.27343 * 2 1 3 30 30 H 1.09000 * 109.47300 * 245.27500 * 3 2 1 31 31 H 1.09006 * 109.47542 * 5.27602 * 3 2 1 32 32 H 1.09003 * 110.24523 * 316.01658 * 5 4 3 33 33 H 1.08993 * 110.24516 * 78.01952 * 5 4 3 34 34 H 1.08994 * 110.96780 * 92.69875 * 6 5 4 35 35 H 1.08998 * 110.96673 * 216.42719 * 6 5 4 36 36 H 1.08992 * 109.47555 * 65.38303 * 10 9 7 37 37 H 1.09009 * 109.46829 * 185.38629 * 10 9 7 38 38 H 1.09001 * 109.47168 * 305.37740 * 10 9 7 39 39 H 1.08991 * 109.47371 * 310.00169 * 11 9 7 40 40 H 1.09002 * 109.46800 * 70.00337 * 11 9 7 41 41 H 1.09002 * 109.47103 * 295.00575 * 16 12 11 42 42 H 1.09009 * 109.47419 * 54.99746 * 16 12 11 43 43 H 0.96994 * 119.99992 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9986 1.3292 1.1275 5 6 4.3837 0.8483 1.0652 6 6 4.8221 0.6627 2.5348 7 6 3.8936 1.6578 3.2688 8 1 3.5916 1.2555 4.2357 9 7 4.5621 2.9548 3.4392 10 6 5.7666 2.8212 4.2693 11 6 3.6418 3.9512 4.0031 12 6 4.2865 5.3371 3.9348 13 1 5.2566 5.3115 4.4311 14 6 4.4659 5.7258 2.5264 15 7 4.6044 6.0259 1.4396 16 6 3.3829 6.3549 4.6336 17 6 4.0725 7.6942 4.6746 18 1 5.0567 7.8082 4.2448 19 6 3.4466 8.7744 5.2599 20 7 4.0483 9.9433 5.2952 21 14 1.7440 8.5774 6.0028 22 1 1.8689 8.1916 7.4313 23 1 1.0074 9.8628 5.8998 24 1 1.0023 7.5215 5.2678 25 6 2.6997 1.8000 2.3507 26 8 1.6280 2.2682 2.6721 27 1 -0.5399 -0.9353 -0.0044 28 1 -0.5399 0.9353 0.0046 29 1 1.8500 -0.9353 -0.0045 30 1 2.6175 1.4048 -0.9334 31 1 1.3590 2.1315 0.0945 32 1 4.4291 -0.1031 0.5351 33 1 5.0173 1.5859 0.5728 34 1 4.6417 -0.3587 2.8696 35 1 5.8692 0.9352 2.6669 36 1 6.5005 2.2062 3.7486 37 1 6.1885 3.8083 4.4589 38 1 5.5045 2.3502 5.2167 39 1 2.7139 3.9535 3.4313 40 1 3.4277 3.7009 5.0422 41 1 2.4454 6.4455 4.0850 42 1 3.1777 6.0207 5.6507 43 1 3.6081 10.7030 5.7073 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281521189.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:00 Heat of formation + Delta-G solvation = 26.140517 kcal Electronic energy + Delta-G solvation = -23573.680860 eV Core-core repulsion = 20233.951188 eV Total energy + Delta-G solvation = -3339.729672 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.82524 -37.80939 -36.60934 -35.84473 -34.51115 -33.47116 -31.91876 -30.66338 -27.95792 -27.58396 -26.23743 -25.18283 -22.35563 -21.43204 -21.33767 -20.23909 -19.44306 -17.20689 -17.03919 -16.74219 -16.51500 -16.01147 -15.09369 -14.81661 -14.47933 -14.37542 -14.15899 -13.78730 -13.46676 -13.30852 -13.20283 -13.03859 -12.79894 -12.39036 -12.16353 -12.04419 -11.84940 -11.70918 -11.60429 -11.52413 -11.37692 -11.25956 -11.13303 -10.67248 -10.33639 -9.99641 -9.85703 -9.71713 -9.53452 -9.27213 -8.84217 -8.57771 -8.40150 -6.07244 -4.07561 1.87576 2.43747 3.01479 3.30154 3.39073 3.43354 3.71410 3.81351 3.93487 4.11453 4.29394 4.43055 4.60743 4.72217 4.82107 4.84995 4.99074 5.06769 5.15885 5.28029 5.29290 5.35986 5.42137 5.48326 5.51061 5.58176 5.61902 5.69389 5.73388 5.93158 6.02876 6.27926 6.29340 6.33182 6.36678 6.47029 6.89534 6.94332 6.98996 7.05131 7.20076 7.67770 8.11480 8.44047 8.58273 8.95926 9.53199 11.05769 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018832 B = 0.004136 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.443757 B = 6768.692912 C = 7347.869861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.179 4.179 3 C 0.152 3.848 4 N -0.611 5.611 5 C 0.109 3.891 6 C -0.129 4.129 7 C 0.051 3.949 8 H 0.078 0.922 9 N -0.526 5.526 10 C 0.017 3.983 11 C 0.048 3.952 12 C 0.022 3.978 13 H 0.106 0.894 14 C 0.254 3.746 15 N -0.472 5.472 16 C -0.005 4.005 17 C -0.526 4.526 18 H 0.074 0.926 19 C 0.072 3.928 20 N -0.898 5.898 21 Si 0.875 3.125 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.263 1.263 25 C 0.531 3.469 26 O -0.521 6.521 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.032 0.968 39 H 0.094 0.906 40 H 0.057 0.943 41 H 0.026 0.974 42 H 0.033 0.967 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.283 -24.900 -5.559 25.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.198 4.198 3 C 0.031 3.969 4 N -0.344 5.344 5 C -0.014 4.014 6 C -0.167 4.167 7 C -0.061 4.061 8 H 0.096 0.904 9 N -0.252 5.252 10 C -0.131 4.131 11 C -0.081 4.081 12 C 0.000 4.000 13 H 0.124 0.876 14 C -0.063 4.063 15 N -0.149 5.149 16 C -0.044 4.044 17 C -0.564 4.564 18 H 0.092 0.908 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.702 3.298 22 H -0.200 1.200 23 H -0.213 1.213 24 H -0.187 1.187 25 C 0.317 3.683 26 O -0.396 6.396 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.127 0.873 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.051 0.949 39 H 0.112 0.888 40 H 0.075 0.925 41 H 0.044 0.956 42 H 0.051 0.949 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.002 -23.838 -7.505 24.991 hybrid contribution -1.118 -0.339 1.602 1.983 sum -1.116 -24.177 -5.903 24.912 Atomic orbital electron populations 1.23927 0.95900 1.02191 0.98671 1.23256 0.96325 0.98668 1.01535 1.20456 0.91899 0.95940 0.88619 1.48147 1.12835 1.62453 1.11001 1.22037 0.82001 0.99670 0.97661 1.22742 1.01162 0.98663 0.94097 1.22361 0.93592 0.91863 0.98281 0.90442 1.62011 1.07182 1.05237 1.50816 1.22570 0.92249 1.03334 0.94933 1.22495 0.96274 0.89814 0.99481 1.18993 1.02515 0.93819 0.84652 0.87648 1.28692 0.92110 0.91169 0.94319 1.80971 1.09858 1.10617 1.13448 1.19641 0.95185 0.94100 0.95520 1.21016 1.04674 0.91954 1.38768 0.90781 1.24971 0.97583 0.95050 0.95412 1.69903 1.38340 1.00748 1.44604 0.86846 0.85014 0.77954 0.80002 1.20016 1.21288 1.18703 1.20622 0.88381 0.76329 0.82974 1.90727 1.26469 1.44455 1.77962 0.88311 0.88172 0.87328 0.89491 0.89496 0.90720 0.90528 0.89836 0.88200 0.91125 0.89869 0.94949 0.88770 0.92499 0.95591 0.94923 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 14.32 29.01 0.42 -1.09 16 2 C -0.18 -1.60 9.85 -36.03 -0.35 -1.96 16 3 C 0.15 1.58 6.37 -5.20 -0.03 1.54 16 4 N -0.61 -6.98 2.92 -173.79 -0.51 -7.49 16 5 C 0.11 0.90 7.35 -3.12 -0.02 0.88 16 6 C -0.13 -0.96 6.67 -25.09 -0.17 -1.13 16 7 C 0.05 0.57 2.66 -67.72 -0.18 0.39 16 8 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 9 N -0.53 -6.82 4.33 -234.90 -1.02 -7.83 16 10 C 0.02 0.17 9.15 60.06 0.55 0.72 16 11 C 0.05 0.75 4.13 -3.82 -0.02 0.74 16 12 C 0.02 0.41 2.15 -93.41 -0.20 0.21 16 13 H 0.11 1.81 6.18 -51.93 -0.32 1.49 16 14 C 0.25 5.48 13.67 -20.76 -0.28 5.20 16 15 N -0.47 -11.02 18.54 42.15 0.78 -10.24 16 16 C -0.01 -0.12 3.49 -27.88 -0.10 -0.22 16 17 C -0.53 -14.53 9.15 -34.44 -0.32 -14.84 16 18 H 0.07 2.22 7.84 -52.49 -0.41 1.81 16 19 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 20 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 21 Si 0.87 21.36 27.47 -169.99 -4.67 16.69 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 25 C 0.53 7.54 6.86 -10.86 -0.07 7.47 16 26 O -0.52 -9.41 15.87 5.55 0.09 -9.33 16 27 H 0.10 0.72 8.06 -52.49 -0.42 0.29 16 28 H 0.10 0.94 7.84 -52.49 -0.41 0.53 16 29 H 0.11 0.82 8.06 -52.49 -0.42 0.40 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.07 7.57 -51.93 -0.39 0.67 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.65 6.01 -51.93 -0.31 0.33 16 36 H 0.07 0.57 6.30 -51.93 -0.33 0.24 16 37 H 0.08 0.92 6.02 -51.92 -0.31 0.61 16 38 H 0.03 0.29 8.13 -51.93 -0.42 -0.13 16 39 H 0.09 1.73 5.66 -51.93 -0.29 1.43 16 40 H 0.06 0.82 8.12 -51.93 -0.42 0.40 16 41 H 0.03 0.62 7.20 -51.93 -0.37 0.24 16 42 H 0.03 0.69 7.57 -51.92 -0.39 0.30 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 354.70 15.07 5.35 5.35 Total: -1.00 -34.75 354.70 -6.60 -41.35 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -6.52 Total: -1.64 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -0.88 Total: -0.12 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.03 Total: -52.29 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.75 -6.60 -41.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281521189.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.494 kcal (2) G-P(sol) polarization free energy of solvation -34.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds