Wall clock time and date at job start Tue Mar 31 2020 07:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31010 * 1 3 3 C 1.50694 * 119.99907 * 2 1 4 4 N 1.46498 * 109.47524 * 125.27730 * 3 2 1 5 5 C 1.46760 * 124.35189 * 89.99674 * 4 3 2 6 6 C 1.54485 * 105.47415 * 197.02312 * 5 4 3 7 7 C 1.54633 * 101.76160 * 334.58195 * 6 5 4 8 8 H 1.08997 * 110.48459 * 143.61280 * 7 6 5 9 9 N 1.46905 * 110.48551 * 266.12092 * 7 6 5 10 10 C 1.46898 * 110.99791 * 297.81270 * 9 7 6 11 11 C 1.46897 * 110.99715 * 173.85611 * 9 7 6 12 12 C 1.53002 * 109.46846 * 189.99978 * 11 9 7 13 13 H 1.09001 * 109.47315 * 304.99678 * 12 11 9 14 14 C 1.47196 * 109.47038 * 65.00177 * 12 11 9 15 15 N 7.01690 * 118.00072 * 13.43625 * 2 1 3 16 16 C 1.53001 * 109.47055 * 185.00226 * 12 11 9 17 17 C 1.50696 * 109.47287 * 174.99767 * 16 12 11 18 18 H 1.07997 * 119.99961 * 0.02562 * 17 16 12 19 19 C 1.37881 * 120.00140 * 179.97438 * 17 16 12 20 20 N 1.31514 * 120.00130 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99737 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.46968 * 90.00168 * 21 19 17 23 23 H 1.48507 * 109.46758 * 209.99613 * 21 19 17 24 24 H 1.48496 * 109.47583 * 329.99975 * 21 19 17 25 25 C 1.34426 * 124.34684 * 269.70163 * 4 3 2 26 26 O 1.21283 * 124.94238 * 359.57110 * 25 4 3 27 27 H 1.08000 * 119.99610 * 179.73054 * 1 2 3 28 28 H 1.07995 * 119.99626 * 359.72044 * 1 2 3 29 29 H 1.07994 * 119.99616 * 180.27343 * 2 1 3 30 30 H 1.09000 * 109.47300 * 245.27500 * 3 2 1 31 31 H 1.09006 * 109.47542 * 5.27602 * 3 2 1 32 32 H 1.09003 * 110.24523 * 316.01658 * 5 4 3 33 33 H 1.08993 * 110.24516 * 78.01952 * 5 4 3 34 34 H 1.08994 * 110.96780 * 92.69875 * 6 5 4 35 35 H 1.08998 * 110.96673 * 216.42719 * 6 5 4 36 36 H 1.08992 * 109.47555 * 65.38303 * 10 9 7 37 37 H 1.09009 * 109.46829 * 185.38629 * 10 9 7 38 38 H 1.09001 * 109.47168 * 305.37740 * 10 9 7 39 39 H 1.08991 * 109.47371 * 310.00169 * 11 9 7 40 40 H 1.09002 * 109.46800 * 70.00337 * 11 9 7 41 41 H 1.09002 * 109.47103 * 295.00575 * 16 12 11 42 42 H 1.09009 * 109.47419 * 54.99746 * 16 12 11 43 43 H 0.96994 * 119.99992 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9986 1.3292 1.1275 5 6 4.3837 0.8483 1.0652 6 6 4.8221 0.6627 2.5348 7 6 3.8936 1.6578 3.2688 8 1 3.5916 1.2555 4.2357 9 7 4.5621 2.9548 3.4392 10 6 5.7666 2.8212 4.2693 11 6 3.6418 3.9512 4.0031 12 6 4.2865 5.3371 3.9348 13 1 5.2566 5.3115 4.4311 14 6 4.4659 5.7258 2.5264 15 7 4.6044 6.0259 1.4396 16 6 3.3829 6.3549 4.6336 17 6 4.0725 7.6942 4.6746 18 1 5.0567 7.8082 4.2448 19 6 3.4466 8.7744 5.2599 20 7 4.0483 9.9433 5.2952 21 14 1.7440 8.5774 6.0028 22 1 1.8689 8.1916 7.4313 23 1 1.0074 9.8628 5.8998 24 1 1.0023 7.5215 5.2678 25 6 2.6997 1.8000 2.3507 26 8 1.6280 2.2682 2.6721 27 1 -0.5399 -0.9353 -0.0044 28 1 -0.5399 0.9353 0.0046 29 1 1.8500 -0.9353 -0.0045 30 1 2.6175 1.4048 -0.9334 31 1 1.3590 2.1315 0.0945 32 1 4.4291 -0.1031 0.5351 33 1 5.0173 1.5859 0.5728 34 1 4.6417 -0.3587 2.8696 35 1 5.8692 0.9352 2.6669 36 1 6.5005 2.2062 3.7486 37 1 6.1885 3.8083 4.4589 38 1 5.5045 2.3502 5.2167 39 1 2.7139 3.9535 3.4313 40 1 3.4277 3.7009 5.0422 41 1 2.4454 6.4455 4.0850 42 1 3.1777 6.0207 5.6507 43 1 3.6081 10.7030 5.7073 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281521189.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:59 Heat of formation + Delta-G solvation = 2.172001 kcal Electronic energy + Delta-G solvation = -23574.720213 eV Core-core repulsion = 20233.951188 eV Total energy + Delta-G solvation = -3340.769024 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.74159 -39.08007 -37.65574 -37.17844 -35.69375 -35.10210 -33.65055 -31.61901 -29.23888 -28.70556 -27.03835 -26.41714 -23.67875 -23.16116 -22.15858 -21.02387 -20.33561 -18.96191 -18.40757 -17.94439 -17.66669 -16.90948 -16.46040 -15.85046 -15.72807 -15.46494 -15.28929 -15.01576 -14.73329 -14.44592 -14.37483 -14.18969 -13.95648 -13.85428 -13.77710 -13.39086 -13.14973 -12.85493 -12.83249 -12.46304 -12.42522 -12.36792 -12.24964 -12.06856 -12.04987 -11.68286 -11.54681 -11.25748 -10.86752 -10.75674 -10.37651 -9.72031 -9.34037 -8.27885 -6.32794 1.16149 1.37843 1.41609 1.42941 1.52341 2.00647 2.06876 2.21556 2.37566 2.93042 3.08047 3.26493 3.30738 3.60271 3.90174 4.01821 4.06586 4.09785 4.24927 4.32263 4.34733 4.44985 4.57449 4.59004 4.68290 4.71175 4.72409 4.83671 4.90687 4.94363 4.98854 5.13868 5.17014 5.28748 5.41133 5.54232 5.59181 5.60007 5.74569 5.92729 6.01646 6.16485 6.23444 6.73413 6.85411 7.13336 7.31690 8.88706 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018832 B = 0.004136 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.443757 B = 6768.692912 C = 7347.869861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.176 4.176 3 C 0.145 3.855 4 N -0.609 5.609 5 C 0.103 3.897 6 C -0.115 4.115 7 C 0.051 3.949 8 H 0.087 0.913 9 N -0.539 5.539 10 C 0.014 3.986 11 C 0.061 3.939 12 C 0.028 3.972 13 H 0.126 0.874 14 C 0.262 3.738 15 N -0.511 5.511 16 C -0.003 4.003 17 C -0.528 4.528 18 H 0.035 0.965 19 C 0.010 3.990 20 N -0.949 5.949 21 Si 0.942 3.058 22 H -0.253 1.253 23 H -0.291 1.291 24 H -0.251 1.251 25 C 0.512 3.488 26 O -0.574 6.574 27 H 0.118 0.882 28 H 0.085 0.915 29 H 0.132 0.868 30 H 0.106 0.894 31 H 0.055 0.945 32 H 0.108 0.892 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.014 0.986 42 H 0.059 0.941 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.667 -28.359 -4.710 28.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.195 4.195 3 C 0.024 3.976 4 N -0.342 5.342 5 C -0.019 4.019 6 C -0.152 4.152 7 C -0.060 4.060 8 H 0.105 0.895 9 N -0.265 5.265 10 C -0.132 4.132 11 C -0.068 4.068 12 C 0.007 3.993 13 H 0.143 0.857 14 C -0.054 4.054 15 N -0.188 5.188 16 C -0.042 4.042 17 C -0.566 4.566 18 H 0.054 0.946 19 C -0.188 4.188 20 N -0.589 5.589 21 Si 0.765 3.235 22 H -0.177 1.177 23 H -0.217 1.217 24 H -0.175 1.175 25 C 0.300 3.700 26 O -0.453 6.453 27 H 0.136 0.864 28 H 0.103 0.897 29 H 0.150 0.850 30 H 0.124 0.876 31 H 0.074 0.926 32 H 0.126 0.874 33 H 0.087 0.913 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.115 0.885 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.033 0.967 42 H 0.078 0.922 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.430 -27.346 -6.680 28.154 hybrid contribution -1.154 0.746 1.240 1.851 sum -0.724 -26.601 -5.440 27.161 Atomic orbital electron populations 1.24061 0.96213 1.02471 0.98755 1.23296 0.96266 0.98569 1.01397 1.20538 0.91895 0.95918 0.89248 1.48373 1.14161 1.61300 1.10330 1.22308 0.79829 1.00875 0.98853 1.22820 1.01006 0.98921 0.92463 1.22449 0.93290 0.91706 0.98556 0.89495 1.61937 1.07403 1.05702 1.51479 1.22674 0.91348 1.03388 0.95806 1.22201 0.95405 0.88909 1.00297 1.19070 1.02988 0.94709 0.82558 0.85681 1.29340 0.90997 0.90141 0.94901 1.80955 1.11217 1.11832 1.14819 1.19568 0.94768 0.92635 0.97264 1.21324 1.03419 0.94434 1.37449 0.94626 1.25920 1.02029 0.94611 0.96204 1.70060 1.40530 1.01889 1.46465 0.85783 0.79530 0.77964 0.80224 1.17679 1.21697 1.17459 1.21304 0.88577 0.75854 0.84282 1.90685 1.28687 1.46843 1.79135 0.86376 0.89673 0.85043 0.87554 0.92606 0.87405 0.91333 0.87039 0.86571 0.88504 0.91105 0.93178 0.91500 0.90604 0.96729 0.92245 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.04 14.32 67.77 0.97 -2.07 16 2 C -0.18 -2.92 9.85 25.64 0.25 -2.66 16 3 C 0.15 2.96 6.37 85.63 0.55 3.50 16 4 N -0.61 -13.14 2.92 -822.32 -2.40 -15.54 16 5 C 0.10 1.36 7.35 86.83 0.64 2.00 16 6 C -0.11 -1.23 6.67 31.66 0.21 -1.02 16 7 C 0.05 1.02 2.66 44.91 0.12 1.14 16 8 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 9 N -0.54 -12.75 4.33 -897.08 -3.89 -16.64 16 10 C 0.01 0.24 9.15 127.69 1.17 1.41 16 11 C 0.06 1.85 4.13 86.30 0.36 2.20 16 12 C 0.03 1.05 2.15 -12.60 -0.03 1.02 16 13 H 0.13 4.14 6.18 -2.39 -0.01 4.13 16 14 C 0.26 11.45 13.67 89.44 1.22 12.68 16 15 N -0.51 -24.37 18.54 20.00 0.37 -24.00 16 16 C 0.00 -0.15 3.49 29.85 0.10 -0.04 16 17 C -0.53 -29.58 9.15 25.60 0.23 -29.35 16 18 H 0.04 2.21 7.84 -2.91 -0.02 2.19 16 19 C 0.01 0.56 5.47 84.66 0.46 1.02 16 20 N -0.95 -59.58 13.96 21.45 0.30 -59.29 16 21 Si 0.94 43.81 27.47 68.60 1.88 45.70 16 22 H -0.25 -10.83 7.11 99.48 0.71 -10.12 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 24 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 25 C 0.51 14.21 6.86 87.90 0.60 14.81 16 26 O -0.57 -21.28 15.87 -3.04 -0.05 -21.33 16 27 H 0.12 1.53 8.06 -2.91 -0.02 1.51 16 28 H 0.08 1.69 7.84 -2.91 -0.02 1.67 16 29 H 0.13 1.58 8.06 -2.91 -0.02 1.56 16 30 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 1.47 7.57 -2.38 -0.02 1.45 16 32 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.12 0.91 6.01 -2.39 -0.01 0.90 16 36 H 0.10 1.13 6.30 -2.39 -0.02 1.12 16 37 H 0.07 1.38 6.02 -2.38 -0.01 1.37 16 38 H 0.05 0.69 8.13 -2.39 -0.02 0.67 16 39 H 0.07 2.45 5.66 -2.39 -0.01 2.44 16 40 H 0.08 2.00 8.12 -2.39 -0.02 1.98 16 41 H 0.01 0.68 7.20 -2.39 -0.02 0.66 16 42 H 0.06 2.36 7.57 -2.38 -0.02 2.34 16 43 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -79.53 354.70 4.02 -75.51 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 0.94 Total: 10.95 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 6.86 Total: 4.65 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -5.62 Total: -115.47 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.05 Total: -21.33 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.70 kcal Total: -79.53 4.02 -75.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281521189.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.678 kcal (2) G-P(sol) polarization free energy of solvation -79.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds