Wall clock time and date at job start Tue Mar 31 2020 07:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50694 * 120.00272 * 2 1 4 4 N 1.46504 * 109.47449 * 124.99773 * 3 2 1 5 5 C 1.46766 * 124.34838 * 269.73108 * 4 3 2 6 6 C 1.54664 * 105.38150 * 162.84973 * 5 4 3 7 7 C 1.54628 * 101.68299 * 25.76564 * 6 5 4 8 8 H 1.09003 * 110.60133 * 216.25701 * 7 6 5 9 9 N 1.46898 * 110.48746 * 93.66449 * 7 6 5 10 10 C 1.46899 * 110.99747 * 59.81801 * 9 7 6 11 11 C 1.46898 * 111.00040 * 183.77168 * 9 7 6 12 12 C 1.52999 * 109.47282 * 162.52769 * 11 9 7 13 13 H 1.08999 * 109.47042 * 307.73570 * 12 11 9 14 14 C 1.47198 * 109.47165 * 67.73768 * 12 11 9 15 15 N 9.20905 * 144.27530 * 37.16598 * 2 1 3 16 16 C 1.52999 * 109.47194 * 187.73587 * 12 11 9 17 17 C 1.50697 * 109.47004 * 174.99958 * 16 12 11 18 18 H 1.08003 * 120.00017 * 359.97438 * 17 16 12 19 19 C 1.37875 * 120.00163 * 180.02562 * 17 16 12 20 20 N 1.31518 * 120.00213 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00209 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47383 * 89.99919 * 21 19 17 23 23 H 1.48504 * 109.47196 * 209.99989 * 21 19 17 24 24 H 1.48496 * 109.47090 * 329.99654 * 21 19 17 25 25 C 1.34414 * 124.34938 * 90.01937 * 4 3 2 26 26 O 1.21286 * 124.93999 * 0.44346 * 25 4 3 27 27 H 1.08002 * 119.99983 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.00134 * 359.97438 * 1 2 3 29 29 H 1.08008 * 119.99950 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47470 * 5.00193 * 3 2 1 31 31 H 1.09001 * 109.47517 * 244.99873 * 3 2 1 32 32 H 1.08995 * 110.24196 * 281.97678 * 5 4 3 33 33 H 1.09002 * 110.24718 * 43.97938 * 5 4 3 34 34 H 1.08997 * 111.19086 * 267.59466 * 6 5 4 35 35 H 1.08994 * 110.82242 * 143.77334 * 6 5 4 36 36 H 1.09000 * 109.47498 * 71.81966 * 10 9 7 37 37 H 1.08995 * 109.47058 * 191.81854 * 10 9 7 38 38 H 1.08996 * 109.47248 * 311.81822 * 10 9 7 39 39 H 1.09003 * 109.47037 * 282.52654 * 11 9 7 40 40 H 1.09002 * 109.47510 * 42.52312 * 11 9 7 41 41 H 1.09000 * 109.47452 * 294.99583 * 16 12 11 42 42 H 1.09001 * 109.46917 * 55.00321 * 16 12 11 43 43 H 0.96995 * 120.00536 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.6618 1.8486 2.4644 6 6 3.7492 1.2816 3.4068 7 6 4.9269 1.0614 2.4292 8 1 5.4838 0.1631 2.6959 9 7 5.8144 2.2319 2.4215 10 6 6.3660 2.4830 3.7597 11 6 6.8876 2.0723 1.4312 12 6 7.5153 3.4358 1.1352 13 1 6.7322 4.1469 0.8720 14 6 8.2326 3.9151 2.3279 15 7 8.7862 4.2849 3.2484 16 6 8.4967 3.3031 -0.0311 17 6 9.0224 4.6656 -0.4027 18 1 8.6895 5.5390 0.1385 19 6 9.9276 4.7975 -1.4343 20 7 10.3326 3.7342 -2.0938 21 14 10.5798 6.4864 -1.8945 22 1 11.8082 6.7731 -1.1108 23 1 10.8996 6.5153 -3.3444 24 1 9.5501 7.5133 -1.5942 25 6 4.2627 0.8915 1.0806 26 8 4.7977 0.4263 0.0965 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3587 2.1316 0.0896 31 1 2.6214 1.4025 -0.9314 32 1 2.6897 2.9382 2.4642 33 1 1.6771 1.4958 2.7713 34 1 3.4314 0.3394 3.8532 35 1 4.0117 2.0073 4.1765 36 1 7.1012 1.7149 3.9997 37 1 6.8446 3.4621 3.7774 38 1 5.5616 2.4584 4.4947 39 1 7.6491 1.3997 1.8259 40 1 6.4752 1.6550 0.5125 41 1 9.3270 2.6614 0.2639 42 1 7.9853 2.8648 -0.8881 43 1 10.9697 3.8268 -2.8193 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281521195.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:05 Heat of formation + Delta-G solvation = 29.854941 kcal Electronic energy + Delta-G solvation = -23418.112926 eV Core-core repulsion = 20078.544324 eV Total energy + Delta-G solvation = -3339.568602 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.79308 -37.90690 -36.58295 -35.82565 -34.41490 -33.60090 -31.85211 -30.59980 -27.85661 -27.18109 -26.15134 -25.05366 -22.49854 -21.57708 -21.18642 -20.46855 -19.26621 -17.19998 -16.94103 -16.58728 -16.35549 -15.69143 -15.41787 -14.82444 -14.58682 -14.47430 -14.07048 -13.62734 -13.39300 -13.30673 -13.11983 -12.93566 -12.51520 -12.41332 -12.29197 -12.14786 -11.86277 -11.76762 -11.52728 -11.43559 -11.20610 -10.91989 -10.88068 -10.70555 -10.41968 -10.19841 -9.84464 -9.59074 -9.48255 -9.18207 -8.82678 -8.40360 -8.35495 -6.03623 -4.07035 1.85271 2.47821 3.03265 3.33109 3.39377 3.42657 3.59269 3.65516 3.98032 4.15154 4.32598 4.45590 4.63076 4.69903 4.83263 4.84747 4.99977 5.15687 5.17380 5.32028 5.33811 5.39097 5.47603 5.53360 5.57855 5.61590 5.65733 5.75602 5.81145 6.07355 6.18052 6.26433 6.30021 6.41221 6.54610 6.60695 6.92627 7.02975 7.09281 7.53041 7.60157 7.90925 8.15671 8.28687 8.42051 8.97406 9.57835 11.07263 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017619 B = 0.003934 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.769391 B = 7116.421861 C = 8132.754152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.167 4.167 3 C 0.151 3.849 4 N -0.611 5.611 5 C 0.112 3.888 6 C -0.132 4.132 7 C 0.048 3.952 8 H 0.076 0.924 9 N -0.522 5.522 10 C 0.007 3.993 11 C 0.050 3.950 12 C 0.012 3.988 13 H 0.109 0.891 14 C 0.252 3.748 15 N -0.483 5.483 16 C 0.033 3.967 17 C -0.525 4.525 18 H 0.056 0.944 19 C 0.062 3.938 20 N -0.890 5.890 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.285 1.285 24 H -0.273 1.273 25 C 0.531 3.469 26 O -0.518 6.518 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.029 0.971 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.044 0.956 40 H 0.109 0.891 41 H 0.024 0.976 42 H 0.041 0.959 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.901 -7.589 9.137 24.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.186 4.186 3 C 0.030 3.970 4 N -0.345 5.345 5 C -0.011 4.011 6 C -0.170 4.170 7 C -0.064 4.064 8 H 0.094 0.906 9 N -0.248 5.248 10 C -0.141 4.141 11 C -0.078 4.078 12 C -0.010 4.010 13 H 0.126 0.874 14 C -0.063 4.063 15 N -0.161 5.161 16 C -0.006 4.006 17 C -0.564 4.564 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.529 5.529 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.197 1.197 25 C 0.318 3.682 26 O -0.392 6.392 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.128 0.872 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.048 0.952 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.127 0.873 41 H 0.042 0.958 42 H 0.059 0.941 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.990 -6.924 9.647 23.251 hybrid contribution 0.704 0.046 -0.435 0.829 sum -19.286 -6.878 9.212 22.452 Atomic orbital electron populations 1.23857 0.95653 1.02001 1.00602 1.23384 0.96145 0.99297 0.99756 1.20477 0.91749 0.95107 0.89686 1.48146 1.12418 1.61916 1.12029 1.22047 0.98425 0.99434 0.81226 1.22835 0.93925 1.02627 0.97590 1.22352 0.94946 0.94916 0.94162 0.90642 1.62094 1.20092 1.35491 1.07147 1.22859 0.99033 1.02707 0.89478 1.22555 0.91798 0.96641 0.96839 1.19292 0.97514 0.95402 0.88833 0.87353 1.29212 0.91938 0.92195 0.92965 1.81037 1.11057 1.10132 1.13839 1.19162 0.92888 0.98179 0.90371 1.21133 1.25651 0.92838 1.16747 0.92540 1.24959 0.96230 0.96687 0.96120 1.69948 1.32286 1.28507 1.22147 0.86597 0.79379 0.84521 0.77591 1.20714 1.21097 1.19744 1.20602 0.81651 0.76411 0.89579 1.90749 1.67457 1.44585 1.36394 0.88366 0.88388 0.87230 0.89792 0.88769 0.90417 0.90788 0.89812 0.88214 0.95238 0.89731 0.91137 0.93800 0.87321 0.95753 0.94112 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.23 14.32 29.01 0.42 -0.82 16 2 C -0.17 -1.43 9.85 -36.03 -0.35 -1.78 16 3 C 0.15 1.42 6.37 -5.19 -0.03 1.39 16 4 N -0.61 -6.51 2.92 -173.67 -0.51 -7.02 16 5 C 0.11 0.86 7.36 -3.02 -0.02 0.84 16 6 C -0.13 -1.02 6.63 -25.00 -0.17 -1.19 16 7 C 0.05 0.56 2.65 -67.72 -0.18 0.38 16 8 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 9 N -0.52 -7.18 4.58 -234.90 -1.08 -8.25 16 10 C 0.01 0.09 8.66 60.06 0.52 0.61 16 11 C 0.05 0.84 4.52 -3.83 -0.02 0.82 16 12 C 0.01 0.23 2.40 -93.41 -0.22 0.01 16 13 H 0.11 2.07 8.14 -51.93 -0.42 1.65 16 14 C 0.25 5.21 10.88 -20.76 -0.23 4.98 16 15 N -0.48 -10.46 17.69 42.16 0.75 -9.72 16 16 C 0.03 0.80 4.42 -27.88 -0.12 0.68 16 17 C -0.53 -14.45 8.60 -34.44 -0.30 -14.74 16 18 H 0.06 1.54 7.59 -52.48 -0.40 1.14 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 21 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 25 C 0.53 7.32 6.97 -10.86 -0.08 7.24 16 26 O -0.52 -9.17 15.81 5.55 0.09 -9.09 16 27 H 0.10 0.58 8.06 -52.49 -0.42 0.15 16 28 H 0.10 0.54 7.84 -52.49 -0.41 0.13 16 29 H 0.11 1.06 8.06 -52.48 -0.42 0.64 16 30 H 0.08 0.60 7.79 -51.93 -0.40 0.20 16 31 H 0.09 1.04 7.92 -51.93 -0.41 0.63 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.69 5.74 -51.93 -0.30 0.40 16 36 H 0.03 0.39 7.94 -51.93 -0.41 -0.02 16 37 H 0.08 1.29 4.70 -51.93 -0.24 1.05 16 38 H 0.07 0.69 5.67 -51.93 -0.29 0.40 16 39 H 0.04 0.74 7.87 -51.93 -0.41 0.34 16 40 H 0.11 1.98 5.49 -51.93 -0.29 1.70 16 41 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 354.20 15.07 5.34 5.34 Total: -1.00 -32.48 354.20 -7.08 -39.57 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -6.51 Total: -2.10 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -0.88 Total: 0.08 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: -0.10 Total: -50.55 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.48 -7.08 -39.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281521195.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.420 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds