Wall clock time and date at job start Tue Mar 31 2020 07:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50694 * 120.00272 * 2 1 4 4 N 1.46504 * 109.47449 * 124.99773 * 3 2 1 5 5 C 1.46766 * 124.34838 * 269.73108 * 4 3 2 6 6 C 1.54664 * 105.38150 * 162.84973 * 5 4 3 7 7 C 1.54628 * 101.68299 * 25.76564 * 6 5 4 8 8 H 1.09003 * 110.60133 * 216.25701 * 7 6 5 9 9 N 1.46898 * 110.48746 * 93.66449 * 7 6 5 10 10 C 1.46899 * 110.99747 * 59.81801 * 9 7 6 11 11 C 1.46898 * 111.00040 * 183.77168 * 9 7 6 12 12 C 1.52999 * 109.47282 * 162.52769 * 11 9 7 13 13 H 1.08999 * 109.47042 * 307.73570 * 12 11 9 14 14 C 1.47198 * 109.47165 * 67.73768 * 12 11 9 15 15 N 9.20905 * 144.27530 * 37.16598 * 2 1 3 16 16 C 1.52999 * 109.47194 * 187.73587 * 12 11 9 17 17 C 1.50697 * 109.47004 * 174.99958 * 16 12 11 18 18 H 1.08003 * 120.00017 * 359.97438 * 17 16 12 19 19 C 1.37875 * 120.00163 * 180.02562 * 17 16 12 20 20 N 1.31518 * 120.00213 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00209 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47383 * 89.99919 * 21 19 17 23 23 H 1.48504 * 109.47196 * 209.99989 * 21 19 17 24 24 H 1.48496 * 109.47090 * 329.99654 * 21 19 17 25 25 C 1.34414 * 124.34938 * 90.01937 * 4 3 2 26 26 O 1.21286 * 124.93999 * 0.44346 * 25 4 3 27 27 H 1.08002 * 119.99983 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.00134 * 359.97438 * 1 2 3 29 29 H 1.08008 * 119.99950 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47470 * 5.00193 * 3 2 1 31 31 H 1.09001 * 109.47517 * 244.99873 * 3 2 1 32 32 H 1.08995 * 110.24196 * 281.97678 * 5 4 3 33 33 H 1.09002 * 110.24718 * 43.97938 * 5 4 3 34 34 H 1.08997 * 111.19086 * 267.59466 * 6 5 4 35 35 H 1.08994 * 110.82242 * 143.77334 * 6 5 4 36 36 H 1.09000 * 109.47498 * 71.81966 * 10 9 7 37 37 H 1.08995 * 109.47058 * 191.81854 * 10 9 7 38 38 H 1.08996 * 109.47248 * 311.81822 * 10 9 7 39 39 H 1.09003 * 109.47037 * 282.52654 * 11 9 7 40 40 H 1.09002 * 109.47510 * 42.52312 * 11 9 7 41 41 H 1.09000 * 109.47452 * 294.99583 * 16 12 11 42 42 H 1.09001 * 109.46917 * 55.00321 * 16 12 11 43 43 H 0.96995 * 120.00536 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.6618 1.8486 2.4644 6 6 3.7492 1.2816 3.4068 7 6 4.9269 1.0614 2.4292 8 1 5.4838 0.1631 2.6959 9 7 5.8144 2.2319 2.4215 10 6 6.3660 2.4830 3.7597 11 6 6.8876 2.0723 1.4312 12 6 7.5153 3.4358 1.1352 13 1 6.7322 4.1469 0.8720 14 6 8.2326 3.9151 2.3279 15 7 8.7862 4.2849 3.2484 16 6 8.4967 3.3031 -0.0311 17 6 9.0224 4.6656 -0.4027 18 1 8.6895 5.5390 0.1385 19 6 9.9276 4.7975 -1.4343 20 7 10.3326 3.7342 -2.0938 21 14 10.5798 6.4864 -1.8945 22 1 11.8082 6.7731 -1.1108 23 1 10.8996 6.5153 -3.3444 24 1 9.5501 7.5133 -1.5942 25 6 4.2627 0.8915 1.0806 26 8 4.7977 0.4263 0.0965 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3587 2.1316 0.0896 31 1 2.6214 1.4025 -0.9314 32 1 2.6897 2.9382 2.4642 33 1 1.6771 1.4958 2.7713 34 1 3.4314 0.3394 3.8532 35 1 4.0117 2.0073 4.1765 36 1 7.1012 1.7149 3.9997 37 1 6.8446 3.4621 3.7774 38 1 5.5616 2.4584 4.4947 39 1 7.6491 1.3997 1.8259 40 1 6.4752 1.6550 0.5125 41 1 9.3270 2.6614 0.2639 42 1 7.9853 2.8648 -0.8881 43 1 10.9697 3.8268 -2.8193 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281521195.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:04 Heat of formation + Delta-G solvation = 8.597359 kcal Electronic energy + Delta-G solvation = -23419.034724 eV Core-core repulsion = 20078.544324 eV Total energy + Delta-G solvation = -3340.490400 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.74317 -39.27806 -37.62812 -37.08632 -35.72593 -35.11074 -33.55220 -31.55699 -28.97561 -28.65234 -26.91563 -26.44340 -24.10377 -23.20156 -22.02745 -21.19896 -20.13748 -18.66349 -18.36551 -17.82380 -17.75706 -16.85844 -16.52142 -16.17240 -15.92284 -15.46225 -15.25768 -14.73222 -14.63052 -14.31697 -14.23660 -14.16937 -13.94754 -13.89005 -13.69368 -13.53649 -13.06765 -12.97895 -12.64833 -12.59827 -12.52070 -12.43576 -12.18088 -12.08825 -12.01754 -11.90475 -11.40203 -11.14825 -10.74689 -10.58693 -10.36799 -9.68388 -9.47866 -8.20994 -6.31342 1.23698 1.39606 1.40266 1.44166 1.51187 1.91420 1.94030 2.25588 2.39823 2.89168 3.12569 3.19722 3.29441 3.59152 3.96889 4.01854 4.04854 4.15419 4.21669 4.32657 4.40161 4.48710 4.55355 4.57849 4.63645 4.77206 4.78447 4.82604 4.86199 4.95374 5.04881 5.13563 5.19595 5.41663 5.52202 5.55306 5.70338 5.75055 5.81608 5.85822 5.90610 6.15366 6.17599 6.70880 6.83269 7.17776 7.37508 8.90455 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017619 B = 0.003934 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.769391 B = 7116.421861 C = 8132.754152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.190 4.190 3 C 0.148 3.852 4 N -0.605 5.605 5 C 0.107 3.893 6 C -0.119 4.119 7 C 0.045 3.955 8 H 0.074 0.926 9 N -0.520 5.520 10 C 0.010 3.990 11 C 0.063 3.937 12 C 0.026 3.974 13 H 0.118 0.882 14 C 0.261 3.739 15 N -0.496 5.496 16 C 0.040 3.960 17 C -0.539 4.539 18 H 0.058 0.942 19 C 0.008 3.992 20 N -0.926 5.926 21 Si 0.955 3.045 22 H -0.280 1.280 23 H -0.278 1.278 24 H -0.261 1.261 25 C 0.517 3.483 26 O -0.573 6.573 27 H 0.109 0.891 28 H 0.117 0.883 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.024 0.976 37 H 0.062 0.938 38 H 0.109 0.891 39 H 0.038 0.962 40 H 0.093 0.907 41 H -0.002 1.002 42 H 0.023 0.977 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.474 -6.549 10.960 26.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.209 4.209 3 C 0.027 3.973 4 N -0.337 5.337 5 C -0.014 4.014 6 C -0.156 4.156 7 C -0.067 4.067 8 H 0.092 0.908 9 N -0.245 5.245 10 C -0.138 4.138 11 C -0.066 4.066 12 C 0.004 3.996 13 H 0.136 0.864 14 C -0.054 4.054 15 N -0.174 5.174 16 C 0.001 3.999 17 C -0.577 4.577 18 H 0.077 0.923 19 C -0.191 4.191 20 N -0.566 5.566 21 Si 0.780 3.220 22 H -0.206 1.206 23 H -0.204 1.204 24 H -0.185 1.185 25 C 0.304 3.696 26 O -0.452 6.452 27 H 0.127 0.873 28 H 0.136 0.864 29 H 0.107 0.893 30 H 0.130 0.870 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.042 0.958 37 H 0.080 0.920 38 H 0.127 0.873 39 H 0.056 0.944 40 H 0.111 0.889 41 H 0.017 0.983 42 H 0.041 0.959 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.616 -5.864 11.510 26.046 hybrid contribution 1.400 -0.322 -0.999 1.750 sum -21.216 -6.186 10.511 24.472 Atomic orbital electron populations 1.24071 0.94752 1.03421 0.97121 1.23154 0.96783 0.97997 1.02987 1.20573 0.91665 0.96729 0.88310 1.48343 1.11553 1.60291 1.13560 1.22327 0.99891 0.99826 0.79396 1.22903 0.91538 1.04352 0.96812 1.22464 0.95788 0.93963 0.94443 0.90797 1.61999 1.18834 1.36746 1.06958 1.22851 1.00247 1.01071 0.89598 1.22238 0.92543 0.94393 0.97459 1.19053 0.96429 0.97312 0.86826 0.86411 1.29219 0.91617 0.91740 0.92832 1.81030 1.11275 1.10741 1.14342 1.18948 0.92899 0.96439 0.91639 1.21517 1.25601 0.93908 1.16684 0.92339 1.25826 0.96639 1.00435 0.96221 1.70068 1.33047 1.30679 1.22788 0.85587 0.78760 0.80144 0.77473 1.20627 1.20369 1.18537 1.21063 0.82739 0.76133 0.89687 1.90711 1.68870 1.47248 1.38351 0.87307 0.86449 0.89268 0.86966 0.91583 0.89820 0.87731 0.87416 0.86647 0.95773 0.91992 0.87280 0.94419 0.88900 0.98324 0.95918 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 14.32 67.78 0.97 -0.71 16 2 C -0.19 -3.09 9.85 25.65 0.25 -2.83 16 3 C 0.15 2.68 6.37 85.63 0.55 3.22 16 4 N -0.61 -12.21 2.92 -821.95 -2.40 -14.60 16 5 C 0.11 1.28 7.36 86.90 0.64 1.92 16 6 C -0.12 -1.41 6.63 31.72 0.21 -1.20 16 7 C 0.04 1.00 2.65 44.91 0.12 1.12 16 8 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 9 N -0.52 -13.82 4.58 -897.10 -4.11 -17.93 16 10 C 0.01 0.24 8.66 127.69 1.11 1.34 16 11 C 0.06 2.18 4.52 86.30 0.39 2.57 16 12 C 0.03 1.03 2.40 -12.60 -0.03 1.00 16 13 H 0.12 4.51 8.14 -2.39 -0.02 4.49 16 14 C 0.26 10.79 10.88 89.44 0.97 11.77 16 15 N -0.50 -21.31 17.69 20.01 0.35 -20.95 16 16 C 0.04 2.02 4.42 29.85 0.13 2.15 16 17 C -0.54 -30.10 8.60 25.60 0.22 -29.88 16 18 H 0.06 3.18 7.59 -2.91 -0.02 3.16 16 19 C 0.01 0.43 5.46 84.65 0.46 0.89 16 20 N -0.93 -56.00 13.29 21.45 0.28 -55.71 16 21 Si 0.96 44.78 29.54 68.60 2.03 46.80 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 24 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 25 C 0.52 14.41 6.97 87.90 0.61 15.02 16 26 O -0.57 -21.66 15.81 -3.05 -0.05 -21.70 16 27 H 0.11 0.97 8.06 -2.91 -0.02 0.94 16 28 H 0.12 0.84 7.84 -2.91 -0.02 0.81 16 29 H 0.09 1.80 8.06 -2.91 -0.02 1.77 16 30 H 0.11 1.34 7.79 -2.39 -0.02 1.32 16 31 H 0.07 1.55 7.92 -2.39 -0.02 1.53 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.12 1.05 5.74 -2.39 -0.01 1.04 16 36 H 0.02 0.60 7.94 -2.39 -0.02 0.58 16 37 H 0.06 1.80 4.70 -2.39 -0.01 1.79 16 38 H 0.11 1.74 5.67 -2.39 -0.01 1.72 16 39 H 0.04 1.33 7.87 -2.39 -0.02 1.31 16 40 H 0.09 3.60 5.49 -2.39 -0.01 3.59 16 41 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 42 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -73.09 354.20 3.71 -69.38 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 1.00 Total: 8.33 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 6.60 Total: 6.39 kcal Atomic # 7 Polarization: -103.33 SS G_CDS: -5.87 Total: -109.20 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.05 Total: -21.70 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -73.09 3.71 -69.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281521195.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.975 kcal (2) G-P(sol) polarization free energy of solvation -73.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds