Wall clock time and date at job start Tue Mar 31 2020 07:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 N 1.46502 * 109.46804 * 125.27541 * 3 2 1 5 5 C 1.46768 * 124.35084 * 90.00446 * 4 3 2 6 6 C 1.54476 * 105.47443 * 197.01758 * 5 4 3 7 7 C 1.54632 * 101.76605 * 334.57877 * 6 5 4 8 8 H 1.08999 * 110.48530 * 143.61066 * 7 6 5 9 9 N 1.46899 * 110.48724 * 266.12387 * 7 6 5 10 10 C 1.46900 * 111.00175 * 66.04524 * 9 7 6 11 11 C 1.46901 * 110.99863 * 189.99878 * 9 7 6 12 12 C 1.53002 * 109.47186 * 169.99807 * 11 9 7 13 13 H 1.08997 * 109.46831 * 54.99851 * 12 11 9 14 14 C 1.47196 * 109.46899 * 294.99907 * 12 11 9 15 15 N 9.20706 * 125.99340 * 54.48524 * 2 1 3 16 16 C 1.52996 * 109.46839 * 174.99987 * 12 11 9 17 17 C 1.50705 * 109.46525 * 184.99998 * 16 12 11 18 18 H 1.08001 * 120.00236 * 0.02562 * 17 16 12 19 19 C 1.37883 * 119.99617 * 179.97438 * 17 16 12 20 20 N 1.31513 * 119.99980 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99565 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47281 * 60.00959 * 21 19 17 23 23 H 1.48501 * 109.46685 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47380 * 300.00215 * 21 19 17 25 25 C 1.34422 * 124.35101 * 269.70266 * 4 3 2 26 26 O 1.21275 * 124.93927 * 359.57248 * 25 4 3 27 27 H 1.08002 * 120.00350 * 359.72370 * 1 2 3 28 28 H 1.07998 * 120.00195 * 179.72135 * 1 2 3 29 29 H 1.08002 * 120.00352 * 180.28242 * 2 1 3 30 30 H 1.08998 * 109.47474 * 245.27493 * 3 2 1 31 31 H 1.09001 * 109.47291 * 5.27780 * 3 2 1 32 32 H 1.09003 * 110.24332 * 316.01481 * 5 4 3 33 33 H 1.09003 * 110.24670 * 78.00997 * 5 4 3 34 34 H 1.09003 * 110.97029 * 92.70038 * 6 5 4 35 35 H 1.09002 * 110.96748 * 216.42373 * 6 5 4 36 36 H 1.09001 * 109.47175 * 59.99513 * 10 9 7 37 37 H 1.08996 * 109.47282 * 180.02562 * 10 9 7 38 38 H 1.09008 * 109.46802 * 299.99898 * 10 9 7 39 39 H 1.08996 * 109.46771 * 289.99930 * 11 9 7 40 40 H 1.09001 * 109.47224 * 50.00018 * 11 9 7 41 41 H 1.08997 * 109.47387 * 304.99683 * 16 12 11 42 42 H 1.08995 * 109.47461 * 65.00233 * 16 12 11 43 43 H 0.96995 * 120.00035 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9984 1.3292 1.1276 5 6 4.3836 0.8482 1.0653 6 6 4.8220 0.6626 2.5348 7 6 3.8935 1.6576 3.2690 8 1 3.5914 1.2552 4.2359 9 7 4.5619 2.9546 3.4394 10 6 4.7921 3.6028 2.1414 11 6 3.7937 3.8290 4.3356 12 6 4.6305 5.0607 4.6872 13 1 4.9537 5.5540 3.7706 14 6 5.8103 4.6468 5.4640 15 7 6.7209 4.3274 6.0635 16 6 3.7872 6.0299 5.5180 17 6 4.5690 7.2953 5.7602 18 1 5.5673 7.3981 5.3611 19 6 4.0093 8.3223 6.4904 20 7 2.7935 8.1974 6.9759 21 14 4.9787 9.8905 6.7912 22 1 5.3187 10.5197 5.4898 23 1 4.1602 10.8314 7.5975 24 1 6.2279 9.5671 7.5261 25 6 2.6995 1.7998 2.3508 26 8 1.6279 2.2679 2.6722 27 1 -0.5401 0.9353 0.0045 28 1 -0.5400 -0.9353 -0.0045 29 1 1.8500 -0.9353 -0.0046 30 1 2.6173 1.4049 -0.9334 31 1 1.3589 2.1314 0.0945 32 1 4.4291 -0.1030 0.5351 33 1 5.0172 1.5860 0.5729 34 1 4.6416 -0.3590 2.8696 35 1 5.8691 0.9351 2.6669 36 1 3.8370 3.7648 1.6417 37 1 5.2885 4.5607 2.2966 38 1 5.4221 2.9636 1.5227 39 1 2.8761 4.1430 3.8381 40 1 3.5451 3.2862 5.2476 41 1 2.8698 6.2671 4.9792 42 1 3.5383 5.5681 6.4734 43 1 2.3999 8.9197 7.4899 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281521200.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:09 Heat of formation + Delta-G solvation = 23.178015 kcal Electronic energy + Delta-G solvation = -23430.795942 eV Core-core repulsion = 20090.937807 eV Total energy + Delta-G solvation = -3339.858135 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.11221 -37.63358 -36.63529 -35.80544 -34.43907 -33.42753 -31.81192 -30.60813 -27.96831 -27.17986 -26.53347 -24.85855 -22.44162 -21.61684 -21.56285 -20.28419 -19.34638 -17.26870 -17.09518 -16.56848 -16.28397 -15.97474 -15.05235 -14.89535 -14.63867 -14.45387 -14.10279 -13.84997 -13.36406 -13.32500 -13.00431 -12.85946 -12.68531 -12.34685 -12.22840 -11.98911 -11.88229 -11.64669 -11.43542 -11.35975 -11.22447 -11.12247 -11.01590 -10.63142 -10.51639 -10.29706 -10.11489 -9.77989 -9.50997 -9.20341 -8.91380 -8.42036 -8.25416 -6.05480 -4.09084 1.82899 2.45480 2.94660 3.33257 3.37624 3.40887 3.72374 3.83033 3.88443 4.22157 4.29367 4.44113 4.56391 4.72880 4.78831 4.82351 4.93926 4.98900 5.13834 5.26381 5.32118 5.35747 5.39792 5.48244 5.58108 5.62123 5.69650 5.76033 5.80662 5.99144 6.14503 6.25255 6.27055 6.37923 6.41168 6.51190 6.91159 6.97749 7.02291 7.48889 7.57392 7.89017 8.06135 8.26511 8.59769 8.95321 9.55957 11.05364 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.023562 B = 0.003523 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.057499 B = 7945.278887 C = 8623.150377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.180 4.180 3 C 0.152 3.848 4 N -0.617 5.617 5 C 0.097 3.903 6 C -0.126 4.126 7 C 0.054 3.946 8 H 0.116 0.884 9 N -0.514 5.514 10 C 0.007 3.993 11 C 0.057 3.943 12 C 0.011 3.989 13 H 0.100 0.900 14 C 0.257 3.743 15 N -0.479 5.479 16 C 0.032 3.968 17 C -0.527 4.527 18 H 0.056 0.944 19 C 0.063 3.937 20 N -0.891 5.891 21 Si 0.892 3.108 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.277 1.277 25 C 0.492 3.508 26 O -0.519 6.519 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.030 0.970 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.038 0.962 42 H 0.027 0.973 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.561 -17.668 -17.062 24.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.199 4.199 3 C 0.030 3.970 4 N -0.352 5.352 5 C -0.025 4.025 6 C -0.164 4.164 7 C -0.059 4.059 8 H 0.134 0.866 9 N -0.238 5.238 10 C -0.141 4.141 11 C -0.071 4.071 12 C -0.011 4.011 13 H 0.118 0.882 14 C -0.060 4.060 15 N -0.156 5.156 16 C -0.007 4.007 17 C -0.565 4.565 18 H 0.074 0.926 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.719 3.281 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.202 1.202 25 C 0.278 3.722 26 O -0.392 6.392 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.127 0.873 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.121 0.879 36 H 0.048 0.952 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.056 0.944 42 H 0.045 0.955 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.515 -17.869 -15.713 23.801 hybrid contribution -0.703 1.117 -0.476 1.403 sum -0.188 -16.753 -16.189 23.297 Atomic orbital electron populations 1.23921 0.95908 1.02203 0.98596 1.23242 0.96327 0.98703 1.01596 1.20443 0.91906 0.95989 0.88627 1.48371 1.12865 1.62650 1.11357 1.22275 0.82024 0.99884 0.98351 1.22677 1.01511 0.99227 0.92993 1.22640 0.91137 0.92756 0.99336 0.86646 1.62420 1.45962 1.02716 1.12685 1.22728 1.00560 1.00658 0.90132 1.22372 0.95061 0.93021 0.96651 1.19252 0.88515 0.95322 0.97971 0.88246 1.28856 0.93578 0.91003 0.92591 1.80976 1.12280 1.11352 1.11028 1.19166 0.94589 0.92069 0.94861 1.21094 1.01153 0.99992 1.34276 0.92572 1.24956 0.94898 0.98655 0.95439 1.69934 1.14246 1.33142 1.35574 0.86655 0.80043 0.82980 0.78396 1.20086 1.21201 1.20224 1.21973 0.89674 0.76953 0.83645 1.90745 1.26207 1.44218 1.78053 0.88209 0.88304 0.87337 0.89669 0.89619 0.90555 0.90612 0.89565 0.87882 0.95177 0.90054 0.90951 0.91763 0.89916 0.94400 0.95487 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 14.32 29.02 0.42 -0.96 16 2 C -0.18 -1.45 9.85 -36.02 -0.35 -1.81 16 3 C 0.15 1.30 6.37 -5.19 -0.03 1.26 16 4 N -0.62 -5.99 2.73 -173.78 -0.47 -6.47 16 5 C 0.10 0.66 6.47 -3.12 -0.02 0.64 16 6 C -0.13 -0.98 6.33 -25.10 -0.16 -1.13 16 7 C 0.05 0.62 3.14 -67.72 -0.21 0.41 16 8 H 0.12 1.36 7.93 -51.93 -0.41 0.95 16 9 N -0.51 -6.86 4.41 -234.89 -1.04 -7.90 16 10 C 0.01 0.08 8.20 60.06 0.49 0.57 16 11 C 0.06 0.93 4.04 -3.82 -0.02 0.91 16 12 C 0.01 0.22 2.14 -93.41 -0.20 0.02 16 13 H 0.10 1.77 6.26 -51.93 -0.33 1.44 16 14 C 0.26 5.38 13.67 -20.76 -0.28 5.10 16 15 N -0.48 -10.81 18.54 42.15 0.78 -10.03 16 16 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 17 C -0.53 -14.29 8.60 -34.44 -0.30 -14.58 16 18 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 21 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.49 6.45 5.46 -10.85 -0.06 6.39 16 26 O -0.52 -9.00 16.87 5.56 0.09 -8.90 16 27 H 0.10 0.85 7.84 -52.49 -0.41 0.44 16 28 H 0.10 0.67 8.06 -52.49 -0.42 0.25 16 29 H 0.11 0.76 8.06 -52.49 -0.42 0.34 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.87 7.57 -51.93 -0.39 0.48 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.46 6.19 -51.93 -0.32 0.14 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.79 8.08 -51.93 -0.42 0.37 16 36 H 0.03 0.38 6.78 -51.93 -0.35 0.02 16 37 H 0.08 1.00 6.21 -51.93 -0.32 0.68 16 38 H 0.07 0.67 5.26 -51.92 -0.27 0.39 16 39 H 0.06 1.11 7.33 -51.93 -0.38 0.73 16 40 H 0.08 1.36 7.93 -51.93 -0.41 0.95 16 41 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 355.26 15.07 5.35 5.35 Total: -1.00 -33.17 355.26 -7.03 -40.20 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -6.51 Total: -2.63 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -0.95 Total: -0.88 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.01 Total: -49.70 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.17 -7.03 -40.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281521200.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.380 kcal (2) G-P(sol) polarization free energy of solvation -33.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds