Wall clock time and date at job start Tue Mar 31 2020 07:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 N 1.46502 * 109.46804 * 125.27541 * 3 2 1 5 5 C 1.46768 * 124.35084 * 90.00446 * 4 3 2 6 6 C 1.54476 * 105.47443 * 197.01758 * 5 4 3 7 7 C 1.54632 * 101.76605 * 334.57877 * 6 5 4 8 8 H 1.08999 * 110.48530 * 143.61066 * 7 6 5 9 9 N 1.46899 * 110.48724 * 266.12387 * 7 6 5 10 10 C 1.46900 * 111.00175 * 66.04524 * 9 7 6 11 11 C 1.46901 * 110.99863 * 189.99878 * 9 7 6 12 12 C 1.53002 * 109.47186 * 169.99807 * 11 9 7 13 13 H 1.08997 * 109.46831 * 54.99851 * 12 11 9 14 14 C 1.47196 * 109.46899 * 294.99907 * 12 11 9 15 15 N 9.20706 * 125.99340 * 54.48524 * 2 1 3 16 16 C 1.52996 * 109.46839 * 174.99987 * 12 11 9 17 17 C 1.50705 * 109.46525 * 184.99998 * 16 12 11 18 18 H 1.08001 * 120.00236 * 0.02562 * 17 16 12 19 19 C 1.37883 * 119.99617 * 179.97438 * 17 16 12 20 20 N 1.31513 * 119.99980 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99565 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47281 * 60.00959 * 21 19 17 23 23 H 1.48501 * 109.46685 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47380 * 300.00215 * 21 19 17 25 25 C 1.34422 * 124.35101 * 269.70266 * 4 3 2 26 26 O 1.21275 * 124.93927 * 359.57248 * 25 4 3 27 27 H 1.08002 * 120.00350 * 359.72370 * 1 2 3 28 28 H 1.07998 * 120.00195 * 179.72135 * 1 2 3 29 29 H 1.08002 * 120.00352 * 180.28242 * 2 1 3 30 30 H 1.08998 * 109.47474 * 245.27493 * 3 2 1 31 31 H 1.09001 * 109.47291 * 5.27780 * 3 2 1 32 32 H 1.09003 * 110.24332 * 316.01481 * 5 4 3 33 33 H 1.09003 * 110.24670 * 78.00997 * 5 4 3 34 34 H 1.09003 * 110.97029 * 92.70038 * 6 5 4 35 35 H 1.09002 * 110.96748 * 216.42373 * 6 5 4 36 36 H 1.09001 * 109.47175 * 59.99513 * 10 9 7 37 37 H 1.08996 * 109.47282 * 180.02562 * 10 9 7 38 38 H 1.09008 * 109.46802 * 299.99898 * 10 9 7 39 39 H 1.08996 * 109.46771 * 289.99930 * 11 9 7 40 40 H 1.09001 * 109.47224 * 50.00018 * 11 9 7 41 41 H 1.08997 * 109.47387 * 304.99683 * 16 12 11 42 42 H 1.08995 * 109.47461 * 65.00233 * 16 12 11 43 43 H 0.96995 * 120.00035 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9984 1.3292 1.1276 5 6 4.3836 0.8482 1.0653 6 6 4.8220 0.6626 2.5348 7 6 3.8935 1.6576 3.2690 8 1 3.5914 1.2552 4.2359 9 7 4.5619 2.9546 3.4394 10 6 4.7921 3.6028 2.1414 11 6 3.7937 3.8290 4.3356 12 6 4.6305 5.0607 4.6872 13 1 4.9537 5.5540 3.7706 14 6 5.8103 4.6468 5.4640 15 7 6.7209 4.3274 6.0635 16 6 3.7872 6.0299 5.5180 17 6 4.5690 7.2953 5.7602 18 1 5.5673 7.3981 5.3611 19 6 4.0093 8.3223 6.4904 20 7 2.7935 8.1974 6.9759 21 14 4.9787 9.8905 6.7912 22 1 5.3187 10.5197 5.4898 23 1 4.1602 10.8314 7.5975 24 1 6.2279 9.5671 7.5261 25 6 2.6995 1.7998 2.3508 26 8 1.6279 2.2679 2.6722 27 1 -0.5401 0.9353 0.0045 28 1 -0.5400 -0.9353 -0.0045 29 1 1.8500 -0.9353 -0.0046 30 1 2.6173 1.4049 -0.9334 31 1 1.3589 2.1314 0.0945 32 1 4.4291 -0.1030 0.5351 33 1 5.0172 1.5860 0.5729 34 1 4.6416 -0.3590 2.8696 35 1 5.8691 0.9351 2.6669 36 1 3.8370 3.7648 1.6417 37 1 5.2885 4.5607 2.2966 38 1 5.4221 2.9636 1.5227 39 1 2.8761 4.1430 3.8381 40 1 3.5451 3.2862 5.2476 41 1 2.8698 6.2671 4.9792 42 1 3.5383 5.5681 6.4734 43 1 2.3999 8.9197 7.4899 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281521200.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:08 Heat of formation + Delta-G solvation = 1.654564 kcal Electronic energy + Delta-G solvation = -23431.729269 eV Core-core repulsion = 20090.937807 eV Total energy + Delta-G solvation = -3340.791462 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.01558 -38.97335 -37.66943 -37.06392 -35.67620 -35.04357 -33.38331 -31.58945 -28.92824 -28.70300 -27.34793 -26.17892 -23.99045 -23.14240 -22.40949 -20.99693 -20.19756 -18.60274 -18.39589 -17.94334 -17.66780 -16.87997 -16.58068 -16.07661 -15.83747 -15.36037 -15.04833 -14.92672 -14.63009 -14.55979 -14.21973 -14.11594 -13.91585 -13.73054 -13.57320 -13.27248 -13.06412 -12.89161 -12.76547 -12.59741 -12.48331 -12.44066 -12.33215 -12.09950 -12.00340 -11.74225 -11.40917 -11.31613 -11.12332 -10.56737 -10.44465 -9.69068 -9.34601 -8.20001 -6.30001 1.17346 1.40729 1.42907 1.47174 1.50292 2.04488 2.11247 2.21259 2.40761 2.80493 3.14623 3.28646 3.40812 3.56906 3.94452 4.01331 4.06089 4.14447 4.19620 4.23275 4.38638 4.43722 4.53985 4.56053 4.69958 4.71152 4.76777 4.80279 4.91600 4.97038 5.03198 5.15552 5.21828 5.42787 5.55092 5.55356 5.63245 5.74590 5.76808 5.84986 5.93892 6.12390 6.16700 6.80771 6.90658 7.13037 7.38876 8.91145 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.023562 B = 0.003523 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.057499 B = 7945.278887 C = 8623.150377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.179 4.179 3 C 0.147 3.853 4 N -0.608 5.608 5 C 0.095 3.905 6 C -0.115 4.115 7 C 0.047 3.953 8 H 0.107 0.893 9 N -0.514 5.514 10 C 0.007 3.993 11 C 0.070 3.930 12 C 0.025 3.975 13 H 0.119 0.881 14 C 0.268 3.732 15 N -0.503 5.503 16 C 0.038 3.962 17 C -0.540 4.540 18 H 0.059 0.941 19 C 0.009 3.991 20 N -0.926 5.926 21 Si 0.954 3.046 22 H -0.261 1.261 23 H -0.283 1.283 24 H -0.277 1.277 25 C 0.484 3.516 26 O -0.575 6.575 27 H 0.087 0.913 28 H 0.112 0.888 29 H 0.127 0.873 30 H 0.117 0.883 31 H 0.061 0.939 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.019 0.981 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.024 0.976 42 H 0.000 1.000 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.461 -18.899 -19.042 26.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.198 4.198 3 C 0.026 3.974 4 N -0.341 5.341 5 C -0.026 4.026 6 C -0.152 4.152 7 C -0.065 4.065 8 H 0.125 0.875 9 N -0.237 5.237 10 C -0.140 4.140 11 C -0.059 4.059 12 C 0.004 3.996 13 H 0.136 0.864 14 C -0.049 4.049 15 N -0.180 5.180 16 C -0.001 4.001 17 C -0.578 4.578 18 H 0.077 0.923 19 C -0.190 4.190 20 N -0.566 5.566 21 Si 0.779 3.221 22 H -0.186 1.186 23 H -0.208 1.208 24 H -0.203 1.203 25 C 0.270 3.730 26 O -0.453 6.453 27 H 0.106 0.894 28 H 0.130 0.870 29 H 0.145 0.855 30 H 0.135 0.865 31 H 0.079 0.921 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.123 0.877 35 H 0.130 0.870 36 H 0.038 0.962 37 H 0.094 0.906 38 H 0.123 0.877 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.042 0.958 42 H 0.018 0.982 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.578 -19.131 -17.743 26.220 hybrid contribution -1.353 1.442 0.097 1.980 sum 1.225 -17.689 -17.646 25.015 Atomic orbital electron populations 1.24046 0.96370 1.02378 0.99043 1.23350 0.96263 0.99023 1.01139 1.20582 0.91939 0.95559 0.89349 1.48474 1.14202 1.61026 1.10402 1.22552 0.80105 1.01864 0.98114 1.22712 1.00844 0.98844 0.92835 1.22769 0.91737 0.92527 0.99432 0.87537 1.62424 1.45205 1.02931 1.13169 1.22810 1.00538 1.01126 0.89556 1.22065 0.94209 0.92414 0.97170 1.19080 0.87460 0.95704 0.97392 0.86389 1.29064 0.93399 0.90298 0.92103 1.80975 1.13207 1.12307 1.11528 1.18969 0.94656 0.92295 0.94204 1.21503 1.01400 1.01032 1.33837 0.92288 1.25802 0.95814 1.02010 0.95397 1.70055 1.15803 1.34213 1.36497 0.85667 0.78402 0.79267 0.78776 1.18573 1.20804 1.20297 1.22245 0.89214 0.76589 0.84966 1.90712 1.28408 1.46946 1.79257 0.89420 0.86954 0.85497 0.86544 0.92069 0.87324 0.89125 0.87683 0.87023 0.96210 0.90625 0.87660 0.93145 0.90691 0.95753 0.98163 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.84 14.32 67.79 0.97 -1.87 16 2 C -0.18 -2.57 9.85 25.65 0.25 -2.31 16 3 C 0.15 2.26 6.37 85.63 0.55 2.81 16 4 N -0.61 -10.50 2.73 -822.30 -2.24 -12.75 16 5 C 0.09 0.89 6.47 86.83 0.56 1.45 16 6 C -0.11 -1.37 6.33 31.65 0.20 -1.17 16 7 C 0.05 1.04 3.14 44.91 0.14 1.18 16 8 H 0.11 2.50 7.93 -2.39 -0.02 2.48 16 9 N -0.51 -13.17 4.41 -897.06 -3.96 -17.13 16 10 C 0.01 0.15 8.20 127.69 1.05 1.20 16 11 C 0.07 2.33 4.04 86.30 0.35 2.68 16 12 C 0.03 0.97 2.14 -12.60 -0.03 0.94 16 13 H 0.12 4.11 6.26 -2.39 -0.01 4.10 16 14 C 0.27 11.12 13.67 89.44 1.22 12.34 16 15 N -0.50 -22.35 18.54 20.00 0.37 -21.98 16 16 C 0.04 1.86 4.42 29.85 0.13 1.99 16 17 C -0.54 -29.48 8.60 25.60 0.22 -29.26 16 18 H 0.06 3.13 7.59 -2.91 -0.02 3.10 16 19 C 0.01 0.49 5.46 84.66 0.46 0.95 16 20 N -0.93 -55.20 13.29 21.45 0.28 -54.91 16 21 Si 0.95 44.19 29.54 68.60 2.03 46.21 16 22 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 25 C 0.48 12.49 5.46 87.90 0.48 12.97 16 26 O -0.57 -20.81 16.87 -3.01 -0.05 -20.86 16 27 H 0.09 1.56 7.84 -2.91 -0.02 1.54 16 28 H 0.11 1.41 8.06 -2.91 -0.02 1.39 16 29 H 0.13 1.37 8.06 -2.91 -0.02 1.34 16 30 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 1.26 7.57 -2.39 -0.02 1.24 16 32 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.09 0.65 6.19 -2.39 -0.01 0.64 16 34 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.11 1.24 8.08 -2.39 -0.02 1.22 16 36 H 0.02 0.47 6.78 -2.39 -0.02 0.45 16 37 H 0.08 1.72 6.21 -2.39 -0.01 1.71 16 38 H 0.11 1.55 5.26 -2.38 -0.01 1.54 16 39 H 0.05 1.82 7.33 -2.39 -0.02 1.81 16 40 H 0.07 2.57 7.93 -2.39 -0.02 2.55 16 41 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 43 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -73.58 355.26 3.98 -69.59 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: 1.00 Total: 7.92 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 6.56 Total: 3.90 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -5.55 Total: -106.77 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.05 Total: -20.86 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -73.58 3.98 -69.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281521200.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.249 kcal (2) G-P(sol) polarization free energy of solvation -73.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds