Wall clock time and date at job start Tue Mar 31 2020 07:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 119.99876 * 2 1 4 4 N 1.46497 * 109.47122 * 125.00212 * 3 2 1 5 5 C 1.46761 * 124.34552 * 269.99291 * 4 3 2 6 6 C 1.54699 * 105.53323 * 196.90574 * 5 4 3 7 7 C 1.54630 * 101.66633 * 334.73920 * 6 5 4 8 8 H 1.09000 * 110.49035 * 265.90361 * 7 6 5 9 9 N 1.46897 * 110.48310 * 143.39541 * 7 6 5 10 10 C 1.46903 * 111.00164 * 298.65466 * 9 7 6 11 11 C 1.46901 * 111.00153 * 174.70349 * 9 7 6 12 12 C 1.53003 * 109.46757 * 287.66175 * 11 9 7 13 13 H 1.09006 * 109.47079 * 56.62831 * 12 11 9 14 14 C 1.47192 * 109.47283 * 296.62512 * 12 11 9 15 15 N 8.86429 * 147.68099 * 81.81333 * 2 1 3 16 16 C 1.53005 * 109.47028 * 176.62492 * 12 11 9 17 17 C 1.50699 * 109.46857 * 185.00318 * 16 12 11 18 18 H 1.07995 * 120.00362 * 359.97438 * 17 16 12 19 19 C 1.37882 * 119.99557 * 180.02562 * 17 16 12 20 20 N 1.31510 * 120.00025 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99750 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47135 * 89.99420 * 21 19 17 23 23 H 1.48494 * 109.46824 * 209.99713 * 21 19 17 24 24 H 1.48502 * 109.47021 * 329.99531 * 21 19 17 25 25 C 1.34423 * 124.34999 * 89.97675 * 4 3 2 26 26 O 1.21281 * 124.94276 * 359.64160 * 25 4 3 27 27 H 1.07999 * 119.99695 * 180.02562 * 1 2 3 28 28 H 1.07994 * 119.99923 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.99642 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47383 * 4.99211 * 3 2 1 31 31 H 1.09004 * 109.46608 * 244.99732 * 3 2 1 32 32 H 1.08993 * 110.25209 * 315.99338 * 5 4 3 33 33 H 1.08998 * 110.24620 * 77.91419 * 5 4 3 34 34 H 1.09000 * 111.08424 * 216.63174 * 6 5 4 35 35 H 1.08999 * 110.94715 * 92.79563 * 6 5 4 36 36 H 1.09005 * 109.46774 * 301.66519 * 10 9 7 37 37 H 1.08992 * 109.47245 * 61.66832 * 10 9 7 38 38 H 1.09000 * 109.46991 * 181.67423 * 10 9 7 39 39 H 1.08991 * 109.47654 * 167.66383 * 11 9 7 40 40 H 1.08997 * 109.47287 * 47.65958 * 11 9 7 41 41 H 1.08997 * 109.47195 * 304.99843 * 16 12 11 42 42 H 1.08997 * 109.47083 * 65.00056 * 16 12 11 43 43 H 0.97008 * 119.99539 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.6600 1.8434 2.4658 6 6 4.0168 2.0751 3.1720 7 6 4.9328 1.0789 2.4239 8 1 4.9847 0.1315 2.9604 9 7 6.2772 1.6457 2.2527 10 6 6.2317 2.8760 1.4513 11 6 7.1910 0.6624 1.6561 12 6 7.5293 -0.4128 2.6907 13 1 6.6089 -0.8719 3.0518 14 6 8.2471 0.2011 3.8196 15 7 8.8011 0.6748 4.6908 16 6 8.4132 -1.4819 2.0450 17 6 8.6451 -2.6018 3.0264 18 1 8.2064 -2.5555 4.0121 19 6 9.4183 -3.6850 2.6660 20 7 9.9530 -3.7411 1.4658 21 14 9.7064 -5.0729 3.8827 22 1 8.6416 -6.0963 3.7275 23 1 11.0304 -5.6927 3.6221 24 1 9.6762 -4.5330 5.2658 25 6 4.2626 0.8908 1.0807 26 8 4.7930 0.4123 0.1006 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0894 31 1 2.6213 1.4025 -0.9314 32 1 2.1116 2.7817 2.3839 33 1 2.0704 1.1091 3.0147 34 1 3.9547 1.8274 4.2317 35 1 4.3590 3.1004 3.0319 36 1 5.7909 2.6596 0.4781 37 1 5.6272 3.6228 1.9660 38 1 7.2433 3.2584 1.3150 39 1 8.1062 1.1623 1.3392 40 1 6.7129 0.1987 0.7933 41 1 7.9186 -1.8741 1.1564 42 1 9.3696 -1.0412 1.7638 43 1 10.4967 -4.5034 1.2122 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281521205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:13 Heat of formation + Delta-G solvation = 22.376114 kcal Electronic energy + Delta-G solvation = -23545.610849 eV Core-core repulsion = 20205.717940 eV Total energy + Delta-G solvation = -3339.892908 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.98348 -37.57537 -36.57847 -35.76510 -34.48591 -33.47061 -31.73654 -30.73647 -27.65187 -27.27942 -26.37283 -24.72905 -22.51153 -21.66285 -21.45816 -20.37491 -19.22037 -17.14451 -17.04254 -16.48068 -16.33124 -15.74706 -15.08630 -14.99016 -14.62184 -14.44021 -14.16686 -13.75694 -13.52522 -13.17838 -12.94834 -12.63293 -12.49024 -12.38786 -12.31045 -12.00236 -11.85923 -11.70414 -11.56396 -11.28714 -11.16522 -11.03063 -10.95792 -10.58426 -10.47139 -10.24634 -10.08684 -9.79448 -9.46910 -9.15477 -8.93129 -8.39393 -8.06572 -6.02967 -4.06019 1.83689 2.51103 2.96395 3.32948 3.39575 3.44097 3.76520 3.85480 3.92270 4.26540 4.36820 4.46202 4.60783 4.74757 4.76757 4.85769 5.01338 5.13009 5.14881 5.29042 5.32200 5.34892 5.36409 5.49756 5.61874 5.67385 5.75466 5.77239 5.91052 5.97112 6.17294 6.29258 6.30782 6.42395 6.50966 6.56732 6.91723 7.05466 7.09455 7.54369 7.61753 7.92113 8.10368 8.30167 8.64679 8.98656 9.58783 11.07990 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016351 B = 0.004121 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.971306 B = 6793.356497 C = 7665.919251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.168 4.168 3 C 0.152 3.848 4 N -0.619 5.619 5 C 0.104 3.896 6 C -0.126 4.126 7 C 0.049 3.951 8 H 0.125 0.875 9 N -0.516 5.516 10 C 0.016 3.984 11 C 0.044 3.956 12 C 0.014 3.986 13 H 0.095 0.905 14 C 0.258 3.742 15 N -0.483 5.483 16 C 0.032 3.968 17 C -0.525 4.525 18 H 0.056 0.944 19 C 0.062 3.938 20 N -0.891 5.891 21 Si 0.890 3.110 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.492 3.508 26 O -0.515 6.515 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.030 0.970 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.039 0.961 42 H 0.026 0.974 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.015 13.219 -2.315 24.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.188 4.188 3 C 0.030 3.970 4 N -0.355 5.355 5 C -0.020 4.020 6 C -0.164 4.164 7 C -0.064 4.064 8 H 0.142 0.858 9 N -0.238 5.238 10 C -0.132 4.132 11 C -0.084 4.084 12 C -0.008 4.008 13 H 0.113 0.887 14 C -0.059 4.059 15 N -0.160 5.160 16 C -0.007 4.007 17 C -0.563 4.563 18 H 0.074 0.926 19 C -0.140 4.140 20 N -0.530 5.530 21 Si 0.718 3.282 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.198 1.198 25 C 0.278 3.722 26 O -0.390 6.390 27 H 0.118 0.882 28 H 0.115 0.885 29 H 0.131 0.869 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.049 0.951 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.057 0.943 42 H 0.044 0.956 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.606 13.713 -1.233 23.146 hybrid contribution -0.438 -1.354 -0.515 1.513 sum -19.043 12.359 -1.748 22.769 Atomic orbital electron populations 1.23852 0.95636 1.01992 1.00533 1.23398 0.96195 0.99372 0.99794 1.20446 0.91690 0.95238 0.89585 1.48398 1.12442 1.63034 1.11584 1.22144 0.97780 0.99454 0.82600 1.22794 0.92428 1.00636 1.00553 1.22683 0.89403 1.00850 0.93427 0.85754 1.62388 1.05759 1.05808 1.49889 1.22502 1.02744 0.92307 0.95618 1.22569 0.96224 0.92664 0.96973 1.19204 0.98523 0.94821 0.88279 0.88738 1.28920 0.92354 0.91122 0.93515 1.80966 1.11069 1.11998 1.11923 1.19164 0.94239 0.90950 0.96355 1.21141 1.31653 1.03941 0.99575 0.92551 1.24953 0.95503 0.98298 0.95209 1.69950 1.33544 1.30626 1.18831 0.86609 0.77597 0.82302 0.81677 1.20529 1.21170 1.19846 1.22143 0.81990 0.76665 0.91433 1.90721 1.67445 1.43667 1.37148 0.88221 0.88541 0.86948 0.90128 0.89240 0.90493 0.90950 0.88549 0.89170 0.95101 0.91359 0.90848 0.90206 0.89517 0.94292 0.95588 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 14.32 29.01 0.42 -0.87 16 2 C -0.17 -1.51 9.85 -36.03 -0.35 -1.87 16 3 C 0.15 1.33 6.37 -5.20 -0.03 1.29 16 4 N -0.62 -6.19 2.92 -173.65 -0.51 -6.70 16 5 C 0.10 0.73 7.35 -3.01 -0.02 0.71 16 6 C -0.13 -1.04 6.69 -24.98 -0.17 -1.20 16 7 C 0.05 0.59 2.91 -67.72 -0.20 0.40 16 8 H 0.12 1.58 6.49 -51.93 -0.34 1.24 16 9 N -0.52 -7.17 4.39 -234.90 -1.03 -8.20 16 10 C 0.02 0.19 8.97 60.07 0.54 0.73 16 11 C 0.04 0.73 4.24 -3.82 -0.02 0.71 16 12 C 0.01 0.27 2.22 -93.41 -0.21 0.06 16 13 H 0.09 1.73 6.57 -51.93 -0.34 1.39 16 14 C 0.26 5.50 13.63 -20.76 -0.28 5.22 16 15 N -0.48 -11.05 18.54 42.15 0.78 -10.27 16 16 C 0.03 0.77 4.42 -27.88 -0.12 0.65 16 17 C -0.52 -14.39 8.60 -34.44 -0.30 -14.69 16 18 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 21 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.49 6.55 6.00 -10.86 -0.07 6.48 16 26 O -0.52 -8.88 14.76 5.56 0.08 -8.80 16 27 H 0.10 0.65 8.06 -52.49 -0.42 0.23 16 28 H 0.10 0.53 7.84 -52.49 -0.41 0.12 16 29 H 0.11 1.22 8.06 -52.49 -0.42 0.79 16 30 H 0.08 0.50 7.79 -51.93 -0.40 0.09 16 31 H 0.09 0.89 7.93 -51.93 -0.41 0.48 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.71 5.90 -51.93 -0.31 0.40 16 36 H 0.03 0.39 6.63 -51.93 -0.34 0.05 16 37 H 0.07 0.66 6.12 -51.93 -0.32 0.34 16 38 H 0.07 0.86 7.96 -51.93 -0.41 0.45 16 39 H 0.08 1.33 7.87 -51.93 -0.41 0.92 16 40 H 0.09 1.56 5.53 -51.93 -0.29 1.27 16 41 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 355.11 15.07 5.35 5.35 Total: -1.00 -33.20 355.11 -6.99 -40.20 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -6.48 Total: -2.06 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -0.91 Total: -0.71 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.02 Total: -50.68 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.08 Total: -8.80 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.20 -6.99 -40.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281521205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.573 kcal (2) G-P(sol) polarization free energy of solvation -33.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds