Wall clock time and date at job start Tue Mar 31 2020 07:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 119.99876 * 2 1 4 4 N 1.46497 * 109.47122 * 125.00212 * 3 2 1 5 5 C 1.46761 * 124.34552 * 269.99291 * 4 3 2 6 6 C 1.54699 * 105.53323 * 196.90574 * 5 4 3 7 7 C 1.54630 * 101.66633 * 334.73920 * 6 5 4 8 8 H 1.09000 * 110.49035 * 265.90361 * 7 6 5 9 9 N 1.46897 * 110.48310 * 143.39541 * 7 6 5 10 10 C 1.46903 * 111.00164 * 298.65466 * 9 7 6 11 11 C 1.46901 * 111.00153 * 174.70349 * 9 7 6 12 12 C 1.53003 * 109.46757 * 287.66175 * 11 9 7 13 13 H 1.09006 * 109.47079 * 56.62831 * 12 11 9 14 14 C 1.47192 * 109.47283 * 296.62512 * 12 11 9 15 15 N 8.86429 * 147.68099 * 81.81333 * 2 1 3 16 16 C 1.53005 * 109.47028 * 176.62492 * 12 11 9 17 17 C 1.50699 * 109.46857 * 185.00318 * 16 12 11 18 18 H 1.07995 * 120.00362 * 359.97438 * 17 16 12 19 19 C 1.37882 * 119.99557 * 180.02562 * 17 16 12 20 20 N 1.31510 * 120.00025 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99750 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47135 * 89.99420 * 21 19 17 23 23 H 1.48494 * 109.46824 * 209.99713 * 21 19 17 24 24 H 1.48502 * 109.47021 * 329.99531 * 21 19 17 25 25 C 1.34423 * 124.34999 * 89.97675 * 4 3 2 26 26 O 1.21281 * 124.94276 * 359.64160 * 25 4 3 27 27 H 1.07999 * 119.99695 * 180.02562 * 1 2 3 28 28 H 1.07994 * 119.99923 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.99642 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47383 * 4.99211 * 3 2 1 31 31 H 1.09004 * 109.46608 * 244.99732 * 3 2 1 32 32 H 1.08993 * 110.25209 * 315.99338 * 5 4 3 33 33 H 1.08998 * 110.24620 * 77.91419 * 5 4 3 34 34 H 1.09000 * 111.08424 * 216.63174 * 6 5 4 35 35 H 1.08999 * 110.94715 * 92.79563 * 6 5 4 36 36 H 1.09005 * 109.46774 * 301.66519 * 10 9 7 37 37 H 1.08992 * 109.47245 * 61.66832 * 10 9 7 38 38 H 1.09000 * 109.46991 * 181.67423 * 10 9 7 39 39 H 1.08991 * 109.47654 * 167.66383 * 11 9 7 40 40 H 1.08997 * 109.47287 * 47.65958 * 11 9 7 41 41 H 1.08997 * 109.47195 * 304.99843 * 16 12 11 42 42 H 1.08997 * 109.47083 * 65.00056 * 16 12 11 43 43 H 0.97008 * 119.99539 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.6600 1.8434 2.4658 6 6 4.0168 2.0751 3.1720 7 6 4.9328 1.0789 2.4239 8 1 4.9847 0.1315 2.9604 9 7 6.2772 1.6457 2.2527 10 6 6.2317 2.8760 1.4513 11 6 7.1910 0.6624 1.6561 12 6 7.5293 -0.4128 2.6907 13 1 6.6089 -0.8719 3.0518 14 6 8.2471 0.2011 3.8196 15 7 8.8011 0.6748 4.6908 16 6 8.4132 -1.4819 2.0450 17 6 8.6451 -2.6018 3.0264 18 1 8.2064 -2.5555 4.0121 19 6 9.4183 -3.6850 2.6660 20 7 9.9530 -3.7411 1.4658 21 14 9.7064 -5.0729 3.8827 22 1 8.6416 -6.0963 3.7275 23 1 11.0304 -5.6927 3.6221 24 1 9.6762 -4.5330 5.2658 25 6 4.2626 0.8908 1.0807 26 8 4.7930 0.4123 0.1006 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0894 31 1 2.6213 1.4025 -0.9314 32 1 2.1116 2.7817 2.3839 33 1 2.0704 1.1091 3.0147 34 1 3.9547 1.8274 4.2317 35 1 4.3590 3.1004 3.0319 36 1 5.7909 2.6596 0.4781 37 1 5.6272 3.6228 1.9660 38 1 7.2433 3.2584 1.3150 39 1 8.1062 1.1623 1.3392 40 1 6.7129 0.1987 0.7933 41 1 7.9186 -1.8741 1.1564 42 1 9.3696 -1.0412 1.7638 43 1 10.4967 -4.5034 1.2122 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281521205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:12 Heat of formation + Delta-G solvation = 0.803449 kcal Electronic energy + Delta-G solvation = -23546.546310 eV Core-core repulsion = 20205.717940 eV Total energy + Delta-G solvation = -3340.828369 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.91505 -38.89295 -37.55895 -37.16697 -35.62810 -35.13291 -33.47607 -31.60716 -29.09160 -28.38601 -27.10764 -26.20453 -23.85718 -23.44428 -22.27499 -21.12308 -20.12045 -18.57329 -18.34714 -17.86950 -17.56840 -16.69760 -16.56857 -16.18957 -15.84581 -15.65530 -15.13864 -14.73010 -14.65240 -14.40632 -14.34707 -14.12487 -13.76910 -13.64432 -13.32050 -13.20721 -13.05959 -13.01095 -12.80388 -12.68222 -12.60102 -12.39293 -12.34968 -12.20914 -11.92282 -11.68219 -11.41983 -11.23706 -11.11629 -10.56713 -10.43062 -9.72460 -9.18476 -8.19886 -6.29704 1.19910 1.39960 1.41252 1.51443 1.52412 2.05266 2.12953 2.22492 2.40740 2.79819 3.14865 3.32160 3.44603 3.63185 3.92247 3.99629 4.07194 4.14033 4.17567 4.30562 4.42549 4.48892 4.58460 4.62187 4.70384 4.75907 4.80577 4.81758 4.89770 4.98124 5.02503 5.16979 5.23230 5.43757 5.49593 5.56230 5.68061 5.76602 5.81751 5.89427 5.93815 6.13821 6.17754 6.81249 6.91696 7.16241 7.39026 8.91582 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016351 B = 0.004121 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.971306 B = 6793.356497 C = 7665.919251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.196 4.196 3 C 0.152 3.848 4 N -0.612 5.612 5 C 0.103 3.897 6 C -0.115 4.115 7 C 0.040 3.960 8 H 0.115 0.885 9 N -0.518 5.518 10 C 0.020 3.980 11 C 0.057 3.943 12 C 0.027 3.973 13 H 0.110 0.890 14 C 0.269 3.731 15 N -0.505 5.505 16 C 0.039 3.961 17 C -0.539 4.539 18 H 0.058 0.942 19 C 0.009 3.991 20 N -0.926 5.926 21 Si 0.954 3.046 22 H -0.267 1.267 23 H -0.283 1.283 24 H -0.271 1.271 25 C 0.483 3.517 26 O -0.568 6.568 27 H 0.104 0.896 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.018 0.982 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.022 0.978 42 H 0.001 0.999 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.623 14.534 -0.711 26.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.215 4.215 3 C 0.031 3.969 4 N -0.346 5.346 5 C -0.019 4.019 6 C -0.153 4.153 7 C -0.072 4.072 8 H 0.132 0.868 9 N -0.241 5.241 10 C -0.128 4.128 11 C -0.072 4.072 12 C 0.006 3.994 13 H 0.128 0.872 14 C -0.047 4.047 15 N -0.182 5.182 16 C 0.000 4.000 17 C -0.577 4.577 18 H 0.076 0.924 19 C -0.190 4.190 20 N -0.566 5.566 21 Si 0.779 3.221 22 H -0.192 1.192 23 H -0.209 1.209 24 H -0.196 1.196 25 C 0.270 3.730 26 O -0.447 6.447 27 H 0.122 0.878 28 H 0.140 0.860 29 H 0.100 0.900 30 H 0.135 0.865 31 H 0.086 0.914 32 H 0.128 0.872 33 H 0.103 0.897 34 H 0.130 0.870 35 H 0.118 0.882 36 H 0.037 0.963 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.040 0.960 42 H 0.019 0.981 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.270 15.057 0.398 26.063 hybrid contribution 0.270 -1.748 -1.045 2.055 sum -21.000 13.309 -0.647 24.871 Atomic orbital electron populations 1.24067 0.94737 1.03428 0.97074 1.23219 0.96938 0.98332 1.03059 1.20558 0.91659 0.96351 0.88365 1.48521 1.11465 1.61454 1.13127 1.22406 0.97450 1.01297 0.80724 1.22837 0.91699 0.99758 1.01005 1.22836 0.89097 1.01851 0.93411 0.86758 1.62363 1.06473 1.05617 1.49624 1.22541 1.03238 0.91824 0.95179 1.22262 0.96845 0.92618 0.95472 1.19024 0.97724 0.94516 0.88182 0.87249 1.29097 0.91833 0.90539 0.93247 1.80963 1.11557 1.12923 1.12770 1.18954 0.93766 0.91664 0.95638 1.21531 1.31375 1.04780 1.00018 0.92377 1.25804 0.95386 1.00925 0.96902 1.70068 1.34368 1.31550 1.20609 0.85603 0.77769 0.79420 0.79258 1.19215 1.20876 1.19564 1.22350 0.83178 0.76380 0.91116 1.90689 1.68899 1.46245 1.38888 0.87788 0.85955 0.90039 0.86497 0.91354 0.87151 0.89657 0.86950 0.88229 0.96310 0.88382 0.90971 0.90673 0.90958 0.95976 0.98076 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 14.32 67.77 0.97 -0.83 16 2 C -0.20 -3.37 9.85 25.64 0.25 -3.12 16 3 C 0.15 2.43 6.37 85.63 0.55 2.98 16 4 N -0.61 -11.29 2.92 -821.91 -2.40 -13.68 16 5 C 0.10 1.08 7.35 86.91 0.64 1.72 16 6 C -0.12 -1.53 6.69 31.73 0.21 -1.32 16 7 C 0.04 0.94 2.91 44.91 0.13 1.07 16 8 H 0.11 2.86 6.49 -2.39 -0.02 2.84 16 9 N -0.52 -14.13 4.39 -897.08 -3.94 -18.07 16 10 C 0.02 0.45 8.97 127.69 1.14 1.59 16 11 C 0.06 1.96 4.24 86.30 0.37 2.33 16 12 C 0.03 1.09 2.22 -12.60 -0.03 1.07 16 13 H 0.11 4.05 6.57 -2.38 -0.02 4.03 16 14 C 0.27 11.48 13.63 89.44 1.22 12.70 16 15 N -0.50 -22.90 18.54 20.00 0.37 -22.52 16 16 C 0.04 1.96 4.42 29.85 0.13 2.09 16 17 C -0.54 -30.01 8.60 25.60 0.22 -29.79 16 18 H 0.06 3.15 7.59 -2.91 -0.02 3.13 16 19 C 0.01 0.49 5.46 84.66 0.46 0.95 16 20 N -0.93 -55.78 13.29 21.45 0.28 -55.49 16 21 Si 0.95 44.71 29.54 68.60 2.03 46.73 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 24 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 25 C 0.48 12.92 6.00 87.90 0.53 13.45 16 26 O -0.57 -20.70 14.76 -3.03 -0.04 -20.75 16 27 H 0.10 1.12 8.06 -2.91 -0.02 1.10 16 28 H 0.12 0.81 7.84 -2.91 -0.02 0.79 16 29 H 0.08 1.88 8.06 -2.91 -0.02 1.86 16 30 H 0.12 1.01 7.79 -2.39 -0.02 0.99 16 31 H 0.07 1.38 7.93 -2.38 -0.02 1.36 16 32 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.10 1.16 5.90 -2.39 -0.01 1.15 16 36 H 0.02 0.47 6.63 -2.38 -0.02 0.46 16 37 H 0.10 1.63 6.12 -2.39 -0.01 1.62 16 38 H 0.07 1.64 7.96 -2.39 -0.02 1.62 16 39 H 0.07 2.61 7.87 -2.39 -0.02 2.59 16 40 H 0.07 2.76 5.53 -2.39 -0.01 2.75 16 41 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 43 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 Total: -1.00 -74.19 355.11 4.09 -70.09 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 1.00 Total: 8.80 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 6.79 Total: 4.89 kcal Atomic # 7 Polarization: -104.09 SS G_CDS: -5.68 Total: -109.76 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.04 Total: -20.75 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -74.19 4.09 -70.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281521205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.896 kcal (2) G-P(sol) polarization free energy of solvation -74.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds