Wall clock time and date at job start Tue Mar 31 2020 07:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40290 * 126.09172 * 2 1 4 4 C 1.31073 * 108.27131 * 179.97438 * 3 2 1 5 5 C 1.39302 * 108.07576 * 0.02562 * 4 3 2 6 6 C 1.34330 * 126.08869 * 179.97438 * 2 1 3 7 7 C 1.50819 * 128.03885 * 0.16119 * 6 2 1 8 8 C 1.53355 * 108.38480 * 163.35476 * 7 6 2 9 9 H 1.09002 * 109.46249 * 289.94405 * 8 7 6 10 10 C 1.50701 * 109.46936 * 169.96222 * 8 7 6 11 11 O 1.21278 * 119.99482 * 359.96394 * 10 8 7 12 12 N 1.34771 * 120.00074 * 179.97438 * 10 8 7 13 13 C 1.46505 * 119.99643 * 180.02562 * 12 10 8 14 14 C 1.53007 * 109.46903 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.46873 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46700 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00803 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99889 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00186 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00030 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 89.99863 * 20 18 16 22 22 H 1.48503 * 109.47261 * 330.00044 * 20 18 16 23 23 H 1.48500 * 109.47454 * 210.00037 * 20 18 16 24 24 C 1.53114 * 109.50593 * 49.95428 * 8 7 6 25 25 C 1.50837 * 127.89632 * 180.02562 * 5 4 3 26 26 H 1.08997 * 109.47276 * 270.02206 * 1 2 3 27 27 H 1.08998 * 109.46879 * 30.02635 * 1 2 3 28 28 H 1.09000 * 109.47258 * 150.02253 * 1 2 3 29 29 H 1.07998 * 125.96225 * 180.02562 * 4 3 2 30 30 H 1.09007 * 109.68001 * 43.63320 * 7 6 2 31 31 H 1.09003 * 109.68399 * 283.08535 * 7 6 2 32 32 H 0.96994 * 120.00413 * 0.02562 * 12 10 8 33 33 H 1.08994 * 109.47383 * 60.00051 * 13 12 10 34 34 H 1.09003 * 109.47228 * 299.99438 * 13 12 10 35 35 H 1.09004 * 109.47180 * 59.99849 * 14 13 12 36 36 H 1.08997 * 109.46702 * 300.00020 * 14 13 12 37 37 H 1.09004 * 109.47139 * 60.00071 * 15 14 13 38 38 H 1.08997 * 109.47675 * 299.99671 * 15 14 13 39 39 H 0.96998 * 120.00124 * 180.02562 * 19 18 16 40 40 H 1.08988 * 109.46553 * 49.74584 * 24 8 7 41 41 H 1.09006 * 109.46341 * 169.73066 * 24 8 7 42 42 H 1.08997 * 109.68554 * 43.70479 * 25 5 4 43 43 H 1.09003 * 109.68549 * 283.13921 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2914 1.1337 0.0000 4 6 3.5393 0.7325 0.0006 5 6 3.5455 -0.6605 0.0003 6 6 2.2563 -1.0855 0.0005 7 6 1.8438 -2.5362 -0.0022 8 6 3.0536 -3.3823 -0.4173 9 1 3.2690 -3.2148 -1.4727 10 6 2.7475 -4.8407 -0.1927 11 8 1.6703 -5.1721 0.2553 12 7 3.6708 -5.7765 -0.4893 13 6 3.3729 -7.1943 -0.2714 14 6 4.5799 -8.0385 -0.6854 15 6 4.2691 -9.5191 -0.4572 16 6 5.4577 -10.3506 -0.8656 17 1 6.3462 -9.8711 -1.2491 18 6 5.4110 -11.7237 -0.7497 19 7 6.4485 -12.4494 -1.1056 20 14 3.8741 -12.5534 -0.0870 21 1 2.9560 -12.8657 -1.2117 22 1 3.1937 -11.6436 0.8693 23 1 4.2507 -13.8104 0.6082 24 6 4.2700 -2.9812 0.4216 25 6 4.7399 -1.5817 0.0013 26 1 -0.3634 0.0004 1.0276 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3634 -0.8902 -0.5135 29 1 4.4106 1.3706 0.0011 30 1 1.0304 -2.6853 -0.7125 31 1 1.5176 -2.8270 0.9964 32 1 4.5325 -5.5114 -0.8471 33 1 2.5072 -7.4798 -0.8690 34 1 3.1574 -7.3623 0.7839 35 1 5.4454 -7.7530 -0.0874 36 1 4.7959 -7.8706 -1.7405 37 1 3.4035 -9.8050 -1.0549 38 1 4.0533 -9.6867 0.5980 39 1 6.4155 -13.4155 -1.0244 40 1 3.9972 -2.9744 1.4768 41 1 5.0754 -3.6977 0.2593 42 1 5.4830 -1.2185 0.7112 43 1 5.1741 -1.6210 -0.9977 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281955850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:57 Heat of formation + Delta-G solvation = 13.617918 kcal Electronic energy + Delta-G solvation = -22477.647139 eV Core-core repulsion = 19137.374446 eV Total energy + Delta-G solvation = -3340.272692 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.83951 -39.86422 -36.51033 -35.55900 -33.93748 -33.35187 -31.56223 -30.55536 -29.96778 -27.26821 -26.87911 -24.44223 -22.90275 -22.38035 -21.20480 -20.73971 -19.81815 -18.95690 -17.49441 -16.82610 -16.51958 -15.88069 -15.67849 -15.46795 -14.77804 -14.52203 -14.37468 -14.21745 -13.72768 -13.51692 -13.50932 -13.23842 -13.04114 -12.74088 -12.67385 -12.15160 -12.04383 -11.93454 -11.87108 -11.19659 -11.11350 -11.04080 -10.91582 -10.76383 -10.20752 -9.99141 -9.80008 -9.57345 -9.50187 -9.25195 -8.91406 -8.57669 -8.46047 -6.08412 -4.07255 1.59622 2.20010 2.53799 2.63217 3.23156 3.29368 3.37191 3.41009 4.17938 4.25666 4.37799 4.42315 4.52812 4.71158 4.80256 4.82393 4.98797 5.05202 5.06294 5.08968 5.25577 5.26084 5.33345 5.53015 5.57171 5.62086 5.62679 5.66295 5.78598 5.94567 5.97887 6.03989 6.30777 6.41037 6.41509 6.65305 6.74374 6.76026 7.19795 7.33287 7.44741 7.56784 7.74157 8.24916 8.48009 8.95409 9.53772 11.04776 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.038665 B = 0.002485 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.988962 B =11264.797960 C =11863.591824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.368 5.368 3 N -0.304 5.304 4 C 0.055 3.945 5 C -0.245 4.245 6 C 0.090 3.910 7 C -0.036 4.036 8 C -0.100 4.100 9 H 0.103 0.897 10 C 0.514 3.486 11 O -0.546 6.546 12 N -0.723 5.723 13 C 0.113 3.887 14 C -0.113 4.113 15 C -0.011 4.011 16 C -0.522 4.522 17 H 0.072 0.928 18 C 0.066 3.934 19 N -0.903 5.903 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.265 1.265 23 H -0.288 1.288 24 C -0.112 4.112 25 C -0.037 4.037 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.182 0.818 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.401 0.599 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.014 0.986 38 H 0.018 0.982 39 H 0.263 0.737 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.734 25.944 1.708 27.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.149 5.149 3 N -0.126 5.126 4 C -0.130 4.130 5 C -0.256 4.256 6 C -0.039 4.039 7 C -0.075 4.075 8 C -0.122 4.122 9 H 0.121 0.879 10 C 0.300 3.700 11 O -0.424 6.424 12 N -0.373 5.373 13 C -0.009 4.009 14 C -0.151 4.151 15 C -0.049 4.049 16 C -0.560 4.560 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.541 5.541 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.189 1.189 23 H -0.214 1.214 24 C -0.150 4.150 25 C -0.075 4.075 26 H 0.094 0.906 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.199 0.801 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.235 0.765 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.032 0.968 38 H 0.037 0.963 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.409 26.525 2.023 28.217 hybrid contribution 0.150 -1.097 0.091 1.111 sum -9.259 25.428 2.113 27.144 Atomic orbital electron populations 1.21880 0.74317 1.04538 1.03547 1.48184 1.06488 1.03439 1.56782 1.77518 1.01585 1.07523 1.25927 1.23570 0.95203 0.94460 0.99744 1.19921 0.94135 0.93847 1.17695 1.20904 0.91115 0.90588 1.01302 1.20073 0.97454 0.85874 1.04081 1.21299 0.96637 0.91548 1.02707 0.87898 1.20434 0.84315 0.87572 0.77688 1.90695 1.23924 1.82762 1.45021 1.46161 1.18085 1.07481 1.65615 1.21670 0.99644 0.78311 1.01318 1.21707 0.95453 0.96940 1.01030 1.19502 0.97597 0.90981 0.96831 1.21092 1.00487 0.91243 1.43205 0.90992 1.25035 0.96144 0.97490 0.94835 1.69911 1.29954 1.05925 1.48356 0.86777 0.83729 0.79040 0.79748 1.20260 1.18907 1.21363 1.21659 0.96062 0.97208 1.00059 1.19993 0.93966 0.91820 1.01728 0.90614 0.89254 0.89354 0.80081 0.89740 0.88606 0.76513 0.91791 0.91750 0.92042 0.92101 0.96783 0.96324 0.92682 0.90905 0.90458 0.90606 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.63 11.32 59.85 0.68 1.31 16 2 N -0.37 -3.74 4.00 -63.88 -0.26 -3.99 16 3 N -0.30 -3.50 12.59 30.55 0.38 -3.11 16 4 C 0.05 0.53 12.00 -17.48 -0.21 0.32 16 5 C -0.24 -2.32 5.91 -105.05 -0.62 -2.94 16 6 C 0.09 0.89 6.73 -82.33 -0.55 0.34 16 7 C -0.04 -0.33 4.63 -27.64 -0.13 -0.46 16 8 C -0.10 -0.91 2.49 -91.53 -0.23 -1.14 16 9 H 0.10 0.82 8.11 -51.93 -0.42 0.40 16 10 C 0.51 6.51 7.15 -10.99 -0.08 6.43 16 11 O -0.55 -8.99 15.82 5.56 0.09 -8.90 16 12 N -0.72 -8.96 5.37 -60.29 -0.32 -9.28 16 13 C 0.11 1.77 5.67 -4.04 -0.02 1.75 16 14 C -0.11 -2.02 5.27 -26.73 -0.14 -2.16 16 15 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 16 C -0.52 -14.48 9.66 -34.44 -0.33 -14.82 16 17 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 18 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 20 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 C -0.11 -0.88 5.18 -26.41 -0.14 -1.02 16 25 C -0.04 -0.27 6.28 -27.56 -0.17 -0.44 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 0.43 7.57 -51.93 -0.39 0.04 16 29 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.08 0.75 7.76 -51.93 -0.40 0.35 16 31 H 0.10 0.99 7.79 -51.93 -0.40 0.58 16 32 H 0.40 3.91 7.80 -40.82 -0.32 3.59 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 38 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.07 0.64 8.11 -51.94 -0.42 0.22 16 41 H 0.08 0.53 7.30 -51.93 -0.38 0.15 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 350.50 15.07 5.28 5.28 Total: -1.00 -34.53 350.50 -7.78 -42.30 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.90 Total: -1.02 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -2.16 Total: -11.39 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.58 Total: -43.09 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.53 -7.78 -42.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281955850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.923 kcal (2) G-P(sol) polarization free energy of solvation -34.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds