Wall clock time and date at job start Tue Mar 31 2020 07:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40290 * 126.09172 * 2 1 4 4 C 1.31073 * 108.27131 * 179.97438 * 3 2 1 5 5 C 1.39302 * 108.07576 * 0.02562 * 4 3 2 6 6 C 1.34330 * 126.08869 * 179.97438 * 2 1 3 7 7 C 1.50819 * 128.03885 * 0.16119 * 6 2 1 8 8 C 1.53355 * 108.38480 * 163.35476 * 7 6 2 9 9 H 1.09002 * 109.46249 * 289.94405 * 8 7 6 10 10 C 1.50701 * 109.46936 * 169.96222 * 8 7 6 11 11 O 1.21278 * 119.99482 * 359.96394 * 10 8 7 12 12 N 1.34771 * 120.00074 * 179.97438 * 10 8 7 13 13 C 1.46505 * 119.99643 * 180.02562 * 12 10 8 14 14 C 1.53007 * 109.46903 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.46873 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46700 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00803 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99889 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00186 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00030 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 89.99863 * 20 18 16 22 22 H 1.48503 * 109.47261 * 330.00044 * 20 18 16 23 23 H 1.48500 * 109.47454 * 210.00037 * 20 18 16 24 24 C 1.53114 * 109.50593 * 49.95428 * 8 7 6 25 25 C 1.50837 * 127.89632 * 180.02562 * 5 4 3 26 26 H 1.08997 * 109.47276 * 270.02206 * 1 2 3 27 27 H 1.08998 * 109.46879 * 30.02635 * 1 2 3 28 28 H 1.09000 * 109.47258 * 150.02253 * 1 2 3 29 29 H 1.07998 * 125.96225 * 180.02562 * 4 3 2 30 30 H 1.09007 * 109.68001 * 43.63320 * 7 6 2 31 31 H 1.09003 * 109.68399 * 283.08535 * 7 6 2 32 32 H 0.96994 * 120.00413 * 0.02562 * 12 10 8 33 33 H 1.08994 * 109.47383 * 60.00051 * 13 12 10 34 34 H 1.09003 * 109.47228 * 299.99438 * 13 12 10 35 35 H 1.09004 * 109.47180 * 59.99849 * 14 13 12 36 36 H 1.08997 * 109.46702 * 300.00020 * 14 13 12 37 37 H 1.09004 * 109.47139 * 60.00071 * 15 14 13 38 38 H 1.08997 * 109.47675 * 299.99671 * 15 14 13 39 39 H 0.96998 * 120.00124 * 180.02562 * 19 18 16 40 40 H 1.08988 * 109.46553 * 49.74584 * 24 8 7 41 41 H 1.09006 * 109.46341 * 169.73066 * 24 8 7 42 42 H 1.08997 * 109.68554 * 43.70479 * 25 5 4 43 43 H 1.09003 * 109.68549 * 283.13921 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2914 1.1337 0.0000 4 6 3.5393 0.7325 0.0006 5 6 3.5455 -0.6605 0.0003 6 6 2.2563 -1.0855 0.0005 7 6 1.8438 -2.5362 -0.0022 8 6 3.0536 -3.3823 -0.4173 9 1 3.2690 -3.2148 -1.4727 10 6 2.7475 -4.8407 -0.1927 11 8 1.6703 -5.1721 0.2553 12 7 3.6708 -5.7765 -0.4893 13 6 3.3729 -7.1943 -0.2714 14 6 4.5799 -8.0385 -0.6854 15 6 4.2691 -9.5191 -0.4572 16 6 5.4577 -10.3506 -0.8656 17 1 6.3462 -9.8711 -1.2491 18 6 5.4110 -11.7237 -0.7497 19 7 6.4485 -12.4494 -1.1056 20 14 3.8741 -12.5534 -0.0870 21 1 2.9560 -12.8657 -1.2117 22 1 3.1937 -11.6436 0.8693 23 1 4.2507 -13.8104 0.6082 24 6 4.2700 -2.9812 0.4216 25 6 4.7399 -1.5817 0.0013 26 1 -0.3634 0.0004 1.0276 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3634 -0.8902 -0.5135 29 1 4.4106 1.3706 0.0011 30 1 1.0304 -2.6853 -0.7125 31 1 1.5176 -2.8270 0.9964 32 1 4.5325 -5.5114 -0.8471 33 1 2.5072 -7.4798 -0.8690 34 1 3.1574 -7.3623 0.7839 35 1 5.4454 -7.7530 -0.0874 36 1 4.7959 -7.8706 -1.7405 37 1 3.4035 -9.8050 -1.0549 38 1 4.0533 -9.6867 0.5980 39 1 6.4155 -13.4155 -1.0244 40 1 3.9972 -2.9744 1.4768 41 1 5.0754 -3.6977 0.2593 42 1 5.4830 -1.2185 0.7112 43 1 5.1741 -1.6210 -0.9977 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281955850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:56 Heat of formation + Delta-G solvation = -9.265128 kcal Electronic energy + Delta-G solvation = -22478.639422 eV Core-core repulsion = 19137.374446 eV Total energy + Delta-G solvation = -3341.264976 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.53966 -40.87099 -37.37521 -36.82927 -35.13383 -34.58629 -33.28812 -31.20897 -30.83129 -28.84944 -27.48524 -25.57497 -24.02765 -23.33073 -22.19890 -21.88010 -20.98596 -19.67143 -18.96141 -18.25880 -17.31265 -16.94880 -16.63640 -16.52450 -16.15802 -15.69608 -15.35221 -15.04155 -14.78185 -14.55739 -14.45183 -14.34326 -13.89839 -13.76876 -13.71569 -13.52067 -13.22075 -12.78697 -12.71515 -12.69189 -12.59877 -11.93060 -11.84832 -11.78567 -11.65243 -11.56997 -11.45215 -11.30788 -10.74883 -10.73233 -10.23586 -10.04203 -9.14312 -8.27983 -6.31588 0.88384 1.37696 1.39569 1.51019 1.58144 1.63754 1.85368 2.23693 2.37394 3.07878 3.45112 3.58987 3.74537 3.82926 3.99101 4.13329 4.22699 4.24156 4.33389 4.35073 4.39820 4.46078 4.54130 4.56810 4.65124 4.68209 4.91411 4.93903 4.94911 4.98618 5.06602 5.08537 5.18045 5.33183 5.41886 5.43285 5.54136 5.58697 5.67047 5.77432 6.10073 6.29202 6.59856 6.74680 6.76984 7.26825 7.33261 8.88335 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.038665 B = 0.002485 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.988962 B =11264.797960 C =11863.591824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.376 5.376 3 N -0.338 5.338 4 C 0.049 3.951 5 C -0.252 4.252 6 C 0.078 3.922 7 C -0.030 4.030 8 C -0.089 4.089 9 H 0.123 0.877 10 C 0.516 3.484 11 O -0.586 6.586 12 N -0.714 5.714 13 C 0.126 3.874 14 C -0.100 4.100 15 C -0.013 4.013 16 C -0.529 4.529 17 H 0.038 0.962 18 C 0.003 3.997 19 N -0.951 5.951 20 Si 0.947 3.053 21 H -0.268 1.268 22 H -0.247 1.247 23 H -0.286 1.286 24 C -0.109 4.109 25 C -0.031 4.031 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.207 0.793 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.416 0.584 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.019 0.981 38 H 0.020 0.980 39 H 0.266 0.734 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.370 27.007 1.830 28.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.158 5.158 3 N -0.160 5.160 4 C -0.135 4.135 5 C -0.263 4.263 6 C -0.051 4.051 7 C -0.069 4.069 8 C -0.111 4.111 9 H 0.140 0.860 10 C 0.303 3.697 11 O -0.466 6.466 12 N -0.366 5.366 13 C 0.002 3.998 14 C -0.138 4.138 15 C -0.051 4.051 16 C -0.567 4.567 17 H 0.057 0.943 18 C -0.193 4.193 19 N -0.591 5.591 20 Si 0.770 3.230 21 H -0.193 1.193 22 H -0.171 1.171 23 H -0.212 1.212 24 C -0.147 4.147 25 C -0.069 4.069 26 H 0.101 0.899 27 H 0.115 0.885 28 H 0.120 0.880 29 H 0.223 0.777 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.253 0.747 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.031 27.626 2.135 29.469 hybrid contribution 0.404 -1.380 0.029 1.438 sum -9.628 26.246 2.164 28.040 Atomic orbital electron populations 1.22127 0.72882 1.05619 1.04410 1.48478 1.07532 1.03170 1.56620 1.77460 1.02613 1.08679 1.27227 1.24051 0.95460 0.95091 0.98929 1.20277 0.94722 0.94175 1.17163 1.21053 0.91612 0.90667 1.01766 1.19988 0.97718 0.85740 1.03468 1.21266 0.97072 0.88642 1.04089 0.85964 1.20994 0.83443 0.88787 0.76444 1.90683 1.25625 1.83540 1.46777 1.45982 1.18938 1.06151 1.65496 1.21293 0.98078 0.79821 1.00590 1.21480 0.96576 0.94258 1.01517 1.19475 0.95539 0.93441 0.96655 1.21478 1.01042 0.91907 1.42273 0.94322 1.25990 0.99526 0.98453 0.95368 1.70060 1.32439 1.06352 1.50286 0.85707 0.79645 0.78027 0.79574 1.19319 1.17083 1.21168 1.21665 0.95757 0.98124 0.99129 1.20035 0.93317 0.90638 1.02957 0.89865 0.88544 0.87952 0.77685 0.89459 0.89878 0.74723 0.92467 0.92521 0.91572 0.91652 0.96307 0.96164 0.92562 0.91986 0.89001 0.89331 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.09 11.32 127.77 1.45 2.53 16 2 N -0.38 -7.32 4.00 -356.02 -1.43 -8.75 16 3 N -0.34 -7.48 12.59 -57.27 -0.72 -8.20 16 4 C 0.05 0.87 12.00 85.06 1.02 1.89 16 5 C -0.25 -4.30 5.91 -20.14 -0.12 -4.42 16 6 C 0.08 1.45 6.73 41.64 0.28 1.73 16 7 C -0.03 -0.52 4.63 30.00 0.14 -0.38 16 8 C -0.09 -1.42 2.49 -11.38 -0.03 -1.45 16 9 H 0.12 1.55 8.11 -2.39 -0.02 1.53 16 10 C 0.52 12.10 7.15 87.66 0.63 12.73 16 11 O -0.59 -18.68 15.82 -3.02 -0.05 -18.73 16 12 N -0.71 -16.06 5.37 -463.05 -2.49 -18.55 16 13 C 0.13 3.71 5.67 86.38 0.49 4.20 16 14 C -0.10 -3.42 5.27 30.60 0.16 -3.26 16 15 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 16 C -0.53 -29.46 9.66 25.60 0.25 -29.21 16 17 H 0.04 2.34 7.99 -2.91 -0.02 2.31 16 18 C 0.00 0.20 5.47 84.65 0.46 0.66 16 19 N -0.95 -58.82 13.96 21.45 0.30 -58.52 16 20 Si 0.95 43.81 27.47 68.60 1.88 45.70 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.25 -10.66 6.54 99.48 0.65 -10.01 16 23 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 24 C -0.11 -1.43 5.18 30.80 0.16 -1.27 16 25 C -0.03 -0.36 6.28 30.06 0.19 -0.17 16 26 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.10 0.90 7.57 -2.39 -0.02 0.88 16 29 H 0.21 2.28 8.06 -2.91 -0.02 2.26 16 30 H 0.09 1.45 7.76 -2.38 -0.02 1.43 16 31 H 0.08 1.67 7.79 -2.39 -0.02 1.65 16 32 H 0.42 6.88 7.80 -92.71 -0.72 6.15 16 33 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 35 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.02 0.81 7.57 -2.39 -0.02 0.80 16 38 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 39 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 40 H 0.06 0.97 8.11 -2.39 -0.02 0.95 16 41 H 0.09 0.95 7.30 -2.38 -0.02 0.94 16 42 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.09 0.79 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -74.87 350.50 2.92 -71.95 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.22 Total: 12.00 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 5.20 Total: -16.89 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -4.33 Total: -94.02 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.05 Total: -18.73 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.70 kcal Total: -74.87 2.92 -71.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281955850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.685 kcal (2) G-P(sol) polarization free energy of solvation -74.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds