Wall clock time and date at job start Tue Mar 31 2020 06:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46507 * 109.47067 * 2 1 4 4 C 1.46496 * 119.99978 * 264.85630 * 3 2 1 5 5 C 1.50700 * 109.47269 * 275.68699 * 4 3 2 6 6 H 1.08000 * 119.99821 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99768 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00272 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99681 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47564 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47512 * 119.99653 * 9 7 5 12 12 H 1.48502 * 109.47170 * 239.99838 * 9 7 5 13 13 C 1.34775 * 119.99646 * 84.86213 * 3 2 1 14 14 O 1.21281 * 120.00283 * 4.94254 * 13 3 2 15 15 C 1.50702 * 119.99664 * 184.67517 * 13 3 2 16 16 H 1.08998 * 109.49698 * 307.69042 * 15 13 3 17 17 C 1.53113 * 109.49566 * 187.59198 * 15 13 3 18 18 C 1.53272 * 109.71812 * 170.15009 * 17 15 13 19 19 N 1.46469 * 108.70224 * 50.73458 * 18 17 15 20 20 C 1.34411 * 128.44170 * 162.68447 * 19 18 17 21 21 C 1.50699 * 125.72422 * 0.21245 * 20 19 18 22 22 N 1.30783 * 108.54882 * 180.22844 * 20 19 18 23 23 C 1.34431 * 109.32269 * 359.93458 * 22 20 19 24 24 C 1.33855 * 107.79801 * 359.97438 * 23 22 20 25 25 C 1.50707 * 128.68166 * 180.12613 * 24 23 22 26 26 H 1.09001 * 109.47499 * 299.99865 * 1 2 3 27 27 H 1.08998 * 109.47505 * 59.99862 * 1 2 3 28 28 H 1.08997 * 109.47230 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47499 * 240.00135 * 2 1 3 30 30 H 1.08998 * 109.47072 * 119.99826 * 2 1 3 31 31 H 1.09001 * 109.47232 * 35.68796 * 4 3 2 32 32 H 1.08998 * 109.47153 * 155.68833 * 4 3 2 33 33 H 0.96996 * 119.99761 * 179.97438 * 8 7 5 34 34 H 1.08993 * 109.43869 * 290.20454 * 17 15 13 35 35 H 1.09003 * 109.43294 * 50.06711 * 17 15 13 36 36 H 1.09010 * 109.55940 * 290.99408 * 18 17 15 37 37 H 1.08998 * 109.76555 * 170.60230 * 18 17 15 38 38 H 1.08990 * 109.47025 * 269.99270 * 21 20 19 39 39 H 1.08995 * 109.47179 * 29.99623 * 21 20 19 40 40 H 1.09004 * 109.46933 * 149.99778 * 21 20 19 41 41 H 1.08001 * 126.09906 * 179.97438 * 23 22 20 42 42 H 1.09010 * 109.74685 * 44.62772 * 25 24 23 43 43 H 1.09001 * 109.74571 * 283.90904 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3697 2.0340 -1.2636 5 6 3.7831 1.6714 -1.6403 6 1 4.3616 1.0195 -1.0024 7 6 4.3376 2.1718 -2.7992 8 7 3.6329 2.9651 -3.5762 9 14 6.0893 1.7217 -3.2665 10 1 6.6616 0.8215 -2.2333 11 1 6.0891 1.0304 -4.5807 12 1 6.9102 2.9559 -3.3565 13 6 2.1443 2.0514 1.1625 14 8 1.9398 1.4841 2.2148 15 6 2.5453 3.5041 1.1552 16 1 3.4537 3.6277 0.5655 17 6 2.7996 3.9712 2.5909 18 6 3.4403 5.3636 2.5759 19 7 2.6378 6.2406 1.7202 20 6 2.6363 7.5836 1.6677 21 6 3.4931 8.4979 2.5049 22 7 1.7661 7.9639 0.7685 23 6 1.1895 6.8799 0.2211 24 6 1.7213 5.7969 0.8008 25 6 1.4174 4.3440 0.5403 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6882 1.7009 -2.0464 32 1 2.2903 3.1149 -1.1485 33 1 4.0232 3.3174 -4.3913 34 1 1.8541 4.0134 3.1315 35 1 3.4695 3.2692 3.0875 36 1 4.4538 5.2947 2.1806 37 1 3.4692 5.7670 3.5881 38 1 2.9670 8.7457 3.4267 39 1 4.4312 7.9976 2.7451 40 1 3.7009 9.4118 1.9483 41 1 0.4322 6.8824 -0.5489 42 1 1.3682 4.1648 -0.5339 43 1 0.4667 4.0780 1.0025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290318257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:53 Heat of formation + Delta-G solvation = 13.005531 kcal Electronic energy + Delta-G solvation = -24277.456153 eV Core-core repulsion = 20937.156905 eV Total energy + Delta-G solvation = -3340.299247 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.16448 -39.50499 -36.13499 -35.26396 -33.30392 -32.78406 -31.25179 -30.27432 -29.47660 -27.17685 -26.42274 -24.13951 -23.42748 -23.02566 -21.49592 -20.45019 -18.92880 -18.12131 -16.76111 -16.64142 -16.27398 -15.84322 -15.40156 -14.72453 -14.48799 -14.03775 -13.87043 -13.71763 -13.45923 -13.33774 -12.95860 -12.81329 -12.75517 -12.33184 -12.27793 -12.07013 -11.79534 -11.64700 -11.52127 -11.35038 -11.00004 -10.93918 -10.80423 -10.62620 -10.49332 -10.14473 -9.75412 -9.74711 -9.27572 -9.07750 -8.60445 -7.91595 -7.78447 -6.23880 -4.31355 2.27313 2.95182 3.17174 3.23107 3.26997 3.31091 3.36950 3.79437 4.28024 4.55926 4.62128 4.76391 4.84718 5.05472 5.09413 5.11909 5.27336 5.41877 5.48631 5.49152 5.60155 5.62450 5.73147 5.78515 5.81241 5.85239 5.89462 5.94523 6.10564 6.18913 6.23283 6.37609 6.40725 6.59938 6.63092 6.75534 7.01624 7.15277 7.44316 7.47404 7.70178 7.99115 8.27376 8.32375 8.71555 8.91323 9.36705 10.82660 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012229 B = 0.006055 C = 0.004791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.173457 B = 4623.452013 C = 5843.012244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.591 5.591 4 C 0.225 3.775 5 C -0.541 4.541 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.887 5.887 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 C 0.523 3.477 14 O -0.574 6.574 15 C -0.108 4.108 16 H 0.111 0.889 17 C -0.110 4.110 18 C 0.104 3.896 19 N -0.451 5.451 20 C 0.195 3.805 21 C -0.063 4.063 22 N -0.495 5.495 23 C -0.025 4.025 24 C -0.006 4.006 25 C -0.041 4.041 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.035 0.965 32 H 0.052 0.948 33 H 0.266 0.734 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.169 0.831 42 H 0.110 0.890 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.052 4.185 9.750 10.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.320 5.320 4 C 0.106 3.894 5 C -0.580 4.580 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.525 5.525 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.208 1.208 13 C 0.311 3.689 14 O -0.456 6.456 15 C -0.129 4.129 16 H 0.129 0.871 17 C -0.148 4.148 18 C -0.018 4.018 19 N -0.135 5.135 20 C -0.066 4.066 21 C -0.122 4.122 22 N -0.215 5.215 23 C -0.172 4.172 24 C -0.121 4.121 25 C -0.079 4.079 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.186 0.814 42 H 0.128 0.872 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.225 4.720 9.975 11.258 hybrid contribution 1.241 -1.100 -0.443 1.717 sum -0.984 3.620 9.533 10.244 Atomic orbital electron populations 1.22108 0.96851 1.01306 1.01888 1.21230 0.93297 0.83796 1.02493 1.48234 1.62247 1.13233 1.08318 1.19735 0.96026 0.94194 0.79474 1.21504 0.98393 1.30707 1.07364 0.92122 1.24932 0.98093 0.94733 0.95983 1.69912 1.36911 1.32079 1.13620 0.86491 0.84342 0.78409 0.78556 1.19705 1.20745 1.20835 1.20180 0.76941 0.88259 0.83564 1.90588 1.53441 1.70162 1.31379 1.21316 1.01488 0.92789 0.97327 0.87105 1.21642 1.02539 0.93769 0.96835 1.22026 0.95104 0.90352 0.94364 1.45254 1.31394 1.06648 1.30231 1.23000 1.01341 0.81363 1.00930 1.20099 0.96668 0.97541 0.97853 1.70390 1.10279 1.30599 1.10225 1.21768 1.04359 0.87241 1.03870 1.21079 0.97272 0.97006 0.96700 1.20409 0.97521 0.86456 1.03541 0.92864 0.92559 0.92401 0.90222 0.91394 0.94722 0.93017 0.92471 0.90579 0.88891 0.89616 0.89189 0.90609 0.91120 0.89434 0.81380 0.87184 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 10.20 37.15 0.38 -2.11 16 2 C 0.12 2.06 6.14 -4.04 -0.02 2.04 16 3 N -0.59 -11.80 2.47 -175.06 -0.43 -12.24 16 4 C 0.23 5.06 4.76 -5.20 -0.02 5.04 16 5 C -0.54 -13.66 9.38 -34.44 -0.32 -13.98 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -23.94 13.29 55.43 0.74 -23.20 16 9 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 10 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 C 0.52 10.18 6.90 -10.99 -0.08 10.10 16 14 O -0.57 -12.09 15.55 5.56 0.09 -12.01 16 15 C -0.11 -1.84 1.69 -91.46 -0.15 -1.99 16 16 H 0.11 2.11 7.61 -51.93 -0.39 1.71 16 17 C -0.11 -1.55 4.60 -26.53 -0.12 -1.67 16 18 C 0.10 1.26 6.61 -3.92 -0.03 1.24 16 19 N -0.45 -6.77 3.13 -109.44 -0.34 -7.11 16 20 C 0.20 2.94 7.94 -155.75 -1.24 1.70 16 21 C -0.06 -0.64 10.24 36.01 0.37 -0.27 16 22 N -0.50 -8.65 11.27 -11.02 -0.12 -8.77 16 23 C -0.03 -0.43 11.84 -17.95 -0.21 -0.65 16 24 C -0.01 -0.10 6.57 -81.73 -0.54 -0.64 16 25 C -0.04 -0.67 5.23 -27.63 -0.14 -0.82 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.42 8.03 -51.93 -0.42 1.00 16 30 H 0.07 1.23 7.52 -51.93 -0.39 0.84 16 31 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 32 H 0.05 1.17 3.89 -51.93 -0.20 0.97 16 33 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.08 1.10 8.11 -51.93 -0.42 0.68 16 35 H 0.09 1.29 7.89 -51.93 -0.41 0.88 16 36 H 0.09 0.99 8.14 -51.92 -0.42 0.56 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.59 7.95 -51.93 -0.41 0.18 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.17 2.53 8.06 -52.49 -0.42 2.11 16 42 H 0.11 1.95 5.60 -51.92 -0.29 1.66 16 43 H 0.08 1.22 8.11 -51.93 -0.42 0.80 16 LS Contribution 348.11 15.07 5.25 5.25 Total: -1.00 -30.42 348.11 -8.79 -39.21 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -6.71 Total: 4.03 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -2.23 Total: -0.41 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.16 Total: -51.32 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.09 Total: -12.01 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.42 -8.79 -39.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290318257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.218 kcal (2) G-P(sol) polarization free energy of solvation -30.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds