Wall clock time and date at job start Tue Mar 31 2020 06:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46507 * 109.47067 * 2 1 4 4 C 1.46496 * 119.99978 * 264.85630 * 3 2 1 5 5 C 1.50700 * 109.47269 * 275.68699 * 4 3 2 6 6 H 1.08000 * 119.99821 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99768 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00272 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99681 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47564 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47512 * 119.99653 * 9 7 5 12 12 H 1.48502 * 109.47170 * 239.99838 * 9 7 5 13 13 C 1.34775 * 119.99646 * 84.86213 * 3 2 1 14 14 O 1.21281 * 120.00283 * 4.94254 * 13 3 2 15 15 C 1.50702 * 119.99664 * 184.67517 * 13 3 2 16 16 H 1.08998 * 109.49698 * 307.69042 * 15 13 3 17 17 C 1.53113 * 109.49566 * 187.59198 * 15 13 3 18 18 C 1.53272 * 109.71812 * 170.15009 * 17 15 13 19 19 N 1.46469 * 108.70224 * 50.73458 * 18 17 15 20 20 C 1.34411 * 128.44170 * 162.68447 * 19 18 17 21 21 C 1.50699 * 125.72422 * 0.21245 * 20 19 18 22 22 N 1.30783 * 108.54882 * 180.22844 * 20 19 18 23 23 C 1.34431 * 109.32269 * 359.93458 * 22 20 19 24 24 C 1.33855 * 107.79801 * 359.97438 * 23 22 20 25 25 C 1.50707 * 128.68166 * 180.12613 * 24 23 22 26 26 H 1.09001 * 109.47499 * 299.99865 * 1 2 3 27 27 H 1.08998 * 109.47505 * 59.99862 * 1 2 3 28 28 H 1.08997 * 109.47230 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47499 * 240.00135 * 2 1 3 30 30 H 1.08998 * 109.47072 * 119.99826 * 2 1 3 31 31 H 1.09001 * 109.47232 * 35.68796 * 4 3 2 32 32 H 1.08998 * 109.47153 * 155.68833 * 4 3 2 33 33 H 0.96996 * 119.99761 * 179.97438 * 8 7 5 34 34 H 1.08993 * 109.43869 * 290.20454 * 17 15 13 35 35 H 1.09003 * 109.43294 * 50.06711 * 17 15 13 36 36 H 1.09010 * 109.55940 * 290.99408 * 18 17 15 37 37 H 1.08998 * 109.76555 * 170.60230 * 18 17 15 38 38 H 1.08990 * 109.47025 * 269.99270 * 21 20 19 39 39 H 1.08995 * 109.47179 * 29.99623 * 21 20 19 40 40 H 1.09004 * 109.46933 * 149.99778 * 21 20 19 41 41 H 1.08001 * 126.09906 * 179.97438 * 23 22 20 42 42 H 1.09010 * 109.74685 * 44.62772 * 25 24 23 43 43 H 1.09001 * 109.74571 * 283.90904 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3697 2.0340 -1.2636 5 6 3.7831 1.6714 -1.6403 6 1 4.3616 1.0195 -1.0024 7 6 4.3376 2.1718 -2.7992 8 7 3.6329 2.9651 -3.5762 9 14 6.0893 1.7217 -3.2665 10 1 6.6616 0.8215 -2.2333 11 1 6.0891 1.0304 -4.5807 12 1 6.9102 2.9559 -3.3565 13 6 2.1443 2.0514 1.1625 14 8 1.9398 1.4841 2.2148 15 6 2.5453 3.5041 1.1552 16 1 3.4537 3.6277 0.5655 17 6 2.7996 3.9712 2.5909 18 6 3.4403 5.3636 2.5759 19 7 2.6378 6.2406 1.7202 20 6 2.6363 7.5836 1.6677 21 6 3.4931 8.4979 2.5049 22 7 1.7661 7.9639 0.7685 23 6 1.1895 6.8799 0.2211 24 6 1.7213 5.7969 0.8008 25 6 1.4174 4.3440 0.5403 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6882 1.7009 -2.0464 32 1 2.2903 3.1149 -1.1485 33 1 4.0232 3.3174 -4.3913 34 1 1.8541 4.0134 3.1315 35 1 3.4695 3.2692 3.0875 36 1 4.4538 5.2947 2.1806 37 1 3.4692 5.7670 3.5881 38 1 2.9670 8.7457 3.4267 39 1 4.4312 7.9976 2.7451 40 1 3.7009 9.4118 1.9483 41 1 0.4322 6.8824 -0.5489 42 1 1.3682 4.1648 -0.5339 43 1 0.4667 4.0780 1.0025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290318257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:52 Heat of formation + Delta-G solvation = -3.168708 kcal Electronic energy + Delta-G solvation = -24278.157520 eV Core-core repulsion = 20937.156905 eV Total energy + Delta-G solvation = -3341.000615 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.35458 -41.04838 -37.42515 -36.90599 -34.75321 -34.43335 -32.46903 -31.63097 -30.60448 -28.99391 -27.60810 -25.45662 -24.86490 -24.67044 -22.83782 -21.60362 -20.21832 -19.59430 -18.62450 -18.07552 -17.63155 -17.21065 -16.81388 -16.28565 -16.15540 -15.40690 -15.05897 -14.96902 -14.75889 -14.53280 -14.42470 -14.12888 -13.95352 -13.71112 -13.43330 -13.27118 -13.15085 -13.13795 -12.83965 -12.80305 -12.64846 -12.55823 -12.19293 -12.10569 -12.01030 -11.77823 -11.60929 -11.02780 -10.71131 -10.52087 -10.42974 -9.47487 -9.14133 -8.22305 -6.36357 1.08506 1.36949 1.40699 1.50199 1.68421 1.85688 2.12960 2.26050 2.41656 3.08154 3.34949 3.58057 3.59744 3.65104 3.83171 3.98180 4.16993 4.23428 4.27799 4.37146 4.41090 4.50110 4.53889 4.59869 4.63321 4.69439 4.77348 4.83145 4.85984 4.96833 5.01076 5.05919 5.09857 5.11993 5.22920 5.32635 5.44123 5.65046 5.78369 5.84285 6.04684 6.35186 6.56394 6.79325 7.12261 7.25893 7.38355 8.82759 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012229 B = 0.006055 C = 0.004791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.173457 B = 4623.452013 C = 5843.012244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.108 3.892 3 N -0.595 5.595 4 C 0.240 3.760 5 C -0.548 4.548 6 H 0.051 0.949 7 C 0.023 3.977 8 N -0.916 5.916 9 Si 0.952 3.048 10 H -0.270 1.270 11 H -0.278 1.278 12 H -0.280 1.280 13 C 0.520 3.480 14 O -0.588 6.588 15 C -0.102 4.102 16 H 0.089 0.911 17 C -0.103 4.103 18 C 0.104 3.896 19 N -0.454 5.454 20 C 0.200 3.800 21 C -0.063 4.063 22 N -0.531 5.531 23 C -0.044 4.044 24 C -0.024 4.024 25 C -0.029 4.029 26 H 0.045 0.955 27 H 0.053 0.947 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.018 0.982 32 H 0.051 0.949 33 H 0.267 0.733 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.129 0.871 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.174 0.826 42 H 0.090 0.910 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.023 4.488 11.250 12.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 N -0.325 5.325 4 C 0.119 3.881 5 C -0.587 4.587 6 H 0.069 0.931 7 C -0.178 4.178 8 N -0.555 5.555 9 Si 0.778 3.222 10 H -0.195 1.195 11 H -0.203 1.203 12 H -0.206 1.206 13 C 0.309 3.691 14 O -0.471 6.471 15 C -0.124 4.124 16 H 0.107 0.893 17 C -0.141 4.141 18 C -0.017 4.017 19 N -0.138 5.138 20 C -0.062 4.062 21 C -0.121 4.121 22 N -0.252 5.252 23 C -0.190 4.190 24 C -0.138 4.138 25 C -0.067 4.067 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.036 0.964 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.147 0.853 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.191 0.809 42 H 0.108 0.892 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.197 5.001 11.490 12.588 hybrid contribution 0.907 -1.216 -0.886 1.756 sum -0.291 3.785 10.604 11.263 Atomic orbital electron populations 1.22006 0.94652 1.03031 1.01315 1.21393 0.95130 0.82704 1.02191 1.48256 1.62452 1.14064 1.07720 1.19401 0.94416 0.94199 0.80050 1.21703 0.99457 1.30249 1.07244 0.93089 1.25606 1.01440 0.94707 0.96017 1.70003 1.38384 1.33045 1.14038 0.85588 0.80254 0.78104 0.78240 1.19457 1.20330 1.20588 1.20565 0.76372 0.89132 0.83027 1.90571 1.54158 1.70758 1.31609 1.21271 1.00493 0.91361 0.99259 0.89250 1.21590 1.02856 0.95188 0.94421 1.22251 0.94659 0.88747 0.96034 1.45450 1.31146 1.07083 1.30079 1.23933 1.00419 0.81850 1.00036 1.20335 0.97063 0.96830 0.97854 1.70390 1.11884 1.31072 1.11857 1.22021 1.04924 0.87693 1.04375 1.21037 0.98406 0.96615 0.97776 1.20201 0.97613 0.86723 1.02188 0.93600 0.92831 0.89554 0.90558 0.91575 0.96374 0.93179 0.92392 0.90676 0.88422 0.88632 0.85272 0.88430 0.88726 0.89098 0.80877 0.89185 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.52 10.20 71.98 0.73 -3.78 16 2 C 0.11 3.87 6.14 86.38 0.53 4.40 16 3 N -0.60 -24.08 2.47 -826.16 -2.04 -26.12 16 4 C 0.24 11.05 4.76 85.63 0.41 11.46 16 5 C -0.55 -27.97 9.38 25.60 0.24 -27.73 16 6 H 0.05 2.66 7.81 -2.91 -0.02 2.63 16 7 C 0.02 1.20 5.46 84.66 0.46 1.66 16 8 N -0.92 -49.93 13.29 21.45 0.28 -49.65 16 9 Si 0.95 41.45 29.54 68.60 2.03 43.48 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 13 C 0.52 20.28 6.90 87.66 0.60 20.89 16 14 O -0.59 -24.47 15.55 -3.03 -0.05 -24.52 16 15 C -0.10 -3.48 1.69 -11.34 -0.02 -3.50 16 16 H 0.09 3.45 7.61 -2.39 -0.02 3.43 16 17 C -0.10 -2.73 4.60 30.72 0.14 -2.59 16 18 C 0.10 2.24 6.61 86.48 0.57 2.81 16 19 N -0.45 -12.87 3.13 -500.15 -1.57 -14.44 16 20 C 0.20 5.64 7.94 138.25 1.10 6.74 16 21 C -0.06 -1.07 10.24 71.24 0.73 -0.34 16 22 N -0.53 -18.33 11.27 -188.77 -2.13 -20.45 16 23 C -0.04 -1.51 11.84 83.30 0.99 -0.52 16 24 C -0.02 -0.78 6.57 40.73 0.27 -0.51 16 25 C -0.03 -0.96 5.23 30.01 0.16 -0.80 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.08 2.74 8.03 -2.39 -0.02 2.72 16 30 H 0.07 2.37 7.52 -2.39 -0.02 2.35 16 31 H 0.02 0.89 8.11 -2.39 -0.02 0.87 16 32 H 0.05 2.36 3.89 -2.39 -0.01 2.35 16 33 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 34 H 0.07 2.04 8.11 -2.39 -0.02 2.02 16 35 H 0.10 2.53 7.89 -2.39 -0.02 2.51 16 36 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 37 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.09 1.17 7.95 -2.39 -0.02 1.15 16 40 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 41 H 0.17 5.43 8.06 -2.91 -0.02 5.41 16 42 H 0.09 3.33 5.60 -2.38 -0.01 3.32 16 43 H 0.08 2.67 8.11 -2.39 -0.02 2.65 16 Total: -1.00 -65.24 348.11 4.43 -60.81 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.99 Total: 22.71 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 6.91 Total: 8.17 kcal Atomic # 7 Polarization: -105.21 SS G_CDS: -5.45 Total: -110.66 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.05 Total: -24.52 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -65.24 4.43 -60.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290318257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.640 kcal (2) G-P(sol) polarization free energy of solvation -65.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds