Wall clock time and date at job start Tue Mar 31 2020 06:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47423 * 2 1 4 4 C 1.46502 * 120.00028 * 94.67915 * 3 2 1 5 5 C 1.50697 * 109.47376 * 84.01781 * 4 3 2 6 6 H 1.08005 * 119.99780 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99738 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00414 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99528 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47329 * 90.00195 * 9 7 5 11 11 H 1.48508 * 109.46922 * 210.00132 * 9 7 5 12 12 H 1.48495 * 109.47217 * 329.99779 * 9 7 5 13 13 C 1.34776 * 120.00043 * 274.67652 * 3 2 1 14 14 O 1.21285 * 120.00253 * 4.07616 * 13 3 2 15 15 C 1.50705 * 120.00000 * 184.06841 * 13 3 2 16 16 H 1.09001 * 109.49556 * 38.97370 * 15 13 3 17 17 C 1.53116 * 109.49527 * 159.03076 * 15 13 3 18 18 C 1.53287 * 109.70492 * 189.86365 * 17 15 13 19 19 N 1.46471 * 108.69326 * 309.23311 * 18 17 15 20 20 C 1.34406 * 128.44488 * 197.29922 * 19 18 17 21 21 C 1.50696 * 125.72355 * 359.88454 * 20 19 18 22 22 N 1.30785 * 108.55003 * 179.86503 * 20 19 18 23 23 C 1.34421 * 109.32466 * 0.05319 * 22 20 19 24 24 C 1.33862 * 107.79777 * 0.02562 * 23 22 20 25 25 C 1.50709 * 128.67921 * 179.85564 * 24 23 22 26 26 H 1.09005 * 109.47181 * 59.99881 * 1 2 3 27 27 H 1.09001 * 109.47076 * 300.00022 * 1 2 3 28 28 H 1.09000 * 109.47402 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46997 * 120.00421 * 2 1 3 30 30 H 1.09001 * 109.47076 * 239.99977 * 2 1 3 31 31 H 1.09006 * 109.46944 * 204.02022 * 4 3 2 32 32 H 1.09000 * 109.46867 * 324.01696 * 4 3 2 33 33 H 0.97005 * 119.99994 * 179.97438 * 8 7 5 34 34 H 1.08995 * 109.43568 * 309.94093 * 17 15 13 35 35 H 1.09000 * 109.43179 * 69.79414 * 17 15 13 36 36 H 1.08996 * 109.59442 * 68.99861 * 18 17 15 37 37 H 1.08999 * 109.59860 * 189.31297 * 18 17 15 38 38 H 1.09007 * 109.46973 * 89.99753 * 21 20 19 39 39 H 1.08996 * 109.47433 * 210.00022 * 21 20 19 40 40 H 1.09003 * 109.47466 * 330.00308 * 21 20 19 41 41 H 1.08001 * 126.10212 * 180.02562 * 23 22 20 42 42 H 1.08995 * 109.74729 * 76.16824 * 25 24 23 43 43 H 1.09007 * 109.74344 * 315.44661 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3601 2.0372 1.2645 5 6 3.7680 1.6698 1.6567 6 1 4.3502 1.0135 1.0267 7 6 4.3129 2.1715 2.8196 8 7 3.6038 2.9702 3.5869 9 14 6.0584 1.7165 3.3053 10 1 7.0060 2.7040 2.7289 11 1 6.1776 1.7218 4.7856 12 1 6.3792 0.3621 2.7877 13 6 2.1533 2.0482 -1.1633 14 8 1.8011 1.5320 -2.2028 15 6 2.7417 3.4356 -1.1725 16 1 3.5621 3.4876 -0.4567 17 6 3.2653 3.7593 -2.5744 18 6 4.0795 5.0575 -2.5350 19 7 3.2856 6.0893 -1.8639 20 6 3.4583 7.4221 -1.8849 21 6 4.5442 8.1571 -2.6276 22 7 2.5255 7.9741 -1.1530 23 6 1.7334 7.0147 -0.6441 24 6 2.1926 5.8335 -1.0753 25 6 1.6599 4.4536 -0.7868 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 2.2867 3.1182 1.1444 32 1 1.6694 1.7103 2.0417 33 1 3.9870 3.3228 4.4053 34 1 3.8996 2.9439 -2.9219 35 1 2.4241 3.8795 -3.2570 36 1 5.0051 4.8919 -1.9837 37 1 4.3112 5.3747 -3.5518 38 1 4.1971 8.4001 -3.6319 39 1 4.7901 9.0761 -2.0958 40 1 5.4309 7.5265 -2.6924 41 1 0.8790 7.1692 -0.0018 42 1 0.7606 4.2753 -1.3763 43 1 1.4292 4.3624 0.2747 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290318258.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:59 Heat of formation + Delta-G solvation = 9.183335 kcal Electronic energy + Delta-G solvation = -24265.569732 eV Core-core repulsion = 20925.104742 eV Total energy + Delta-G solvation = -3340.464990 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.15983 -39.48395 -36.14280 -35.22411 -33.28446 -32.78621 -31.24949 -30.25105 -29.51105 -27.16143 -26.42269 -24.13073 -23.41291 -23.04169 -21.49422 -20.44827 -18.91737 -18.10746 -16.75477 -16.60845 -16.29912 -15.84413 -15.40000 -14.65573 -14.50631 -13.97255 -13.85856 -13.72279 -13.46222 -13.32293 -12.97158 -12.81922 -12.74180 -12.35287 -12.30278 -12.02073 -11.75966 -11.65858 -11.55877 -11.38441 -11.00708 -10.90086 -10.78419 -10.70116 -10.48585 -10.15049 -9.80641 -9.74372 -9.27444 -9.06149 -8.61765 -7.92073 -7.79714 -6.24471 -4.32596 2.27404 2.95586 3.16979 3.22106 3.25679 3.29159 3.36601 3.79974 4.26693 4.57310 4.62480 4.76842 4.85693 5.07789 5.09384 5.12628 5.29124 5.42392 5.49290 5.49854 5.61916 5.62918 5.74576 5.79110 5.81743 5.86652 5.90539 5.94236 6.10703 6.18505 6.23203 6.38308 6.43391 6.61805 6.63615 6.74230 7.01437 7.13782 7.44498 7.46639 7.68744 7.97825 8.27269 8.32231 8.70844 8.91181 9.35724 10.81982 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.006197 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.268085 B = 4517.436079 C = 5813.988452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.117 3.883 3 N -0.591 5.591 4 C 0.231 3.769 5 C -0.542 4.542 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.887 5.887 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.522 3.478 14 O -0.574 6.574 15 C -0.110 4.110 16 H 0.114 0.886 17 C -0.110 4.110 18 C 0.104 3.896 19 N -0.450 5.450 20 C 0.196 3.804 21 C -0.063 4.063 22 N -0.495 5.495 23 C -0.026 4.026 24 C -0.006 4.006 25 C -0.035 4.035 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.035 0.965 33 H 0.266 0.734 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.169 0.831 42 H 0.080 0.920 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.413 3.451 -9.710 10.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.006 4.006 3 N -0.320 5.320 4 C 0.111 3.889 5 C -0.581 4.581 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.525 5.525 9 Si 0.722 3.278 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.310 3.690 14 O -0.455 6.455 15 C -0.131 4.131 16 H 0.132 0.868 17 C -0.148 4.148 18 C -0.018 4.018 19 N -0.134 5.134 20 C -0.066 4.066 21 C -0.122 4.122 22 N -0.215 5.215 23 C -0.173 4.173 24 C -0.121 4.121 25 C -0.073 4.073 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.186 0.814 42 H 0.098 0.902 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.578 4.021 -9.976 10.771 hybrid contribution 1.136 -1.134 0.533 1.692 sum 0.558 2.886 -9.443 9.890 Atomic orbital electron populations 1.22103 0.96850 1.01244 1.01986 1.21226 0.93446 0.83653 1.02313 1.48267 1.62275 1.13278 1.08208 1.19594 0.96106 0.93790 0.79424 1.21459 0.98773 1.30536 1.07323 0.92152 1.24934 0.98020 0.94720 0.96013 1.69908 1.36969 1.31801 1.13780 0.86547 0.84414 0.78991 0.77837 1.20540 1.20972 1.19796 1.20203 0.78214 0.87228 0.83375 1.90592 1.52279 1.70202 1.32464 1.21365 1.00365 0.92842 0.98575 0.86776 1.21645 1.00557 0.95417 0.97161 1.22020 0.94826 0.87196 0.97807 1.45234 1.23668 1.06940 1.37543 1.22998 1.00370 0.80255 1.02942 1.20103 0.93293 0.99808 0.98976 1.70385 1.05626 1.32542 1.12957 1.21756 1.02526 0.87656 1.05365 1.21055 0.92709 0.97643 1.00643 1.20223 0.96901 0.86695 1.03512 0.92653 0.92631 0.92495 0.90234 0.91576 0.93616 0.94670 0.92410 0.89210 0.90397 0.89518 0.89186 0.90598 0.89428 0.91096 0.81416 0.90157 0.88022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 10.21 37.16 0.38 -2.16 16 2 C 0.12 2.09 6.07 -4.05 -0.02 2.07 16 3 N -0.59 -11.82 2.47 -175.06 -0.43 -12.25 16 4 C 0.23 5.20 4.76 -5.19 -0.02 5.18 16 5 C -0.54 -13.57 9.11 -34.44 -0.31 -13.88 16 6 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -23.91 13.29 55.43 0.74 -23.17 16 9 Si 0.89 20.13 29.54 -169.99 -5.02 15.11 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 C 0.52 10.16 6.76 -10.98 -0.07 10.08 16 14 O -0.57 -12.05 15.90 5.55 0.09 -11.96 16 15 C -0.11 -1.89 1.68 -91.46 -0.15 -2.04 16 16 H 0.11 2.22 6.99 -51.93 -0.36 1.85 16 17 C -0.11 -1.57 4.58 -26.52 -0.12 -1.69 16 18 C 0.10 1.29 6.60 -3.91 -0.03 1.26 16 19 N -0.45 -6.82 3.13 -109.43 -0.34 -7.16 16 20 C 0.20 2.97 7.94 -155.76 -1.24 1.73 16 21 C -0.06 -0.65 10.24 36.00 0.37 -0.28 16 22 N -0.50 -8.66 11.27 -11.02 -0.12 -8.78 16 23 C -0.03 -0.44 11.84 -17.95 -0.21 -0.65 16 24 C -0.01 -0.10 6.57 -81.73 -0.54 -0.64 16 25 C -0.03 -0.57 5.36 -27.63 -0.15 -0.72 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 30 H 0.07 1.18 7.63 -51.93 -0.40 0.79 16 31 H 0.05 1.05 4.50 -51.93 -0.23 0.82 16 32 H 0.04 0.85 8.12 -51.93 -0.42 0.42 16 33 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.09 1.25 8.10 -51.93 -0.42 0.83 16 35 H 0.08 1.14 8.11 -51.93 -0.42 0.72 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.60 7.95 -51.93 -0.41 0.19 16 41 H 0.17 2.49 8.06 -52.49 -0.42 2.07 16 42 H 0.08 1.25 8.11 -51.93 -0.42 0.83 16 43 H 0.10 1.76 6.23 -51.93 -0.32 1.43 16 LS Contribution 349.05 15.07 5.26 5.26 Total: -1.00 -30.23 349.05 -8.82 -39.05 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -6.76 Total: 4.04 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -2.22 Total: -0.13 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.16 Total: -51.37 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.09 Total: -11.96 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.23 -8.82 -39.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290318258.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.229 kcal (2) G-P(sol) polarization free energy of solvation -30.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds