Wall clock time and date at job start Tue Mar 31 2020 06:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47423 * 2 1 4 4 C 1.46502 * 120.00028 * 94.67915 * 3 2 1 5 5 C 1.50697 * 109.47376 * 84.01781 * 4 3 2 6 6 H 1.08005 * 119.99780 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99738 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00414 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99528 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47329 * 90.00195 * 9 7 5 11 11 H 1.48508 * 109.46922 * 210.00132 * 9 7 5 12 12 H 1.48495 * 109.47217 * 329.99779 * 9 7 5 13 13 C 1.34776 * 120.00043 * 274.67652 * 3 2 1 14 14 O 1.21285 * 120.00253 * 4.07616 * 13 3 2 15 15 C 1.50705 * 120.00000 * 184.06841 * 13 3 2 16 16 H 1.09001 * 109.49556 * 38.97370 * 15 13 3 17 17 C 1.53116 * 109.49527 * 159.03076 * 15 13 3 18 18 C 1.53287 * 109.70492 * 189.86365 * 17 15 13 19 19 N 1.46471 * 108.69326 * 309.23311 * 18 17 15 20 20 C 1.34406 * 128.44488 * 197.29922 * 19 18 17 21 21 C 1.50696 * 125.72355 * 359.88454 * 20 19 18 22 22 N 1.30785 * 108.55003 * 179.86503 * 20 19 18 23 23 C 1.34421 * 109.32466 * 0.05319 * 22 20 19 24 24 C 1.33862 * 107.79777 * 0.02562 * 23 22 20 25 25 C 1.50709 * 128.67921 * 179.85564 * 24 23 22 26 26 H 1.09005 * 109.47181 * 59.99881 * 1 2 3 27 27 H 1.09001 * 109.47076 * 300.00022 * 1 2 3 28 28 H 1.09000 * 109.47402 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46997 * 120.00421 * 2 1 3 30 30 H 1.09001 * 109.47076 * 239.99977 * 2 1 3 31 31 H 1.09006 * 109.46944 * 204.02022 * 4 3 2 32 32 H 1.09000 * 109.46867 * 324.01696 * 4 3 2 33 33 H 0.97005 * 119.99994 * 179.97438 * 8 7 5 34 34 H 1.08995 * 109.43568 * 309.94093 * 17 15 13 35 35 H 1.09000 * 109.43179 * 69.79414 * 17 15 13 36 36 H 1.08996 * 109.59442 * 68.99861 * 18 17 15 37 37 H 1.08999 * 109.59860 * 189.31297 * 18 17 15 38 38 H 1.09007 * 109.46973 * 89.99753 * 21 20 19 39 39 H 1.08996 * 109.47433 * 210.00022 * 21 20 19 40 40 H 1.09003 * 109.47466 * 330.00308 * 21 20 19 41 41 H 1.08001 * 126.10212 * 180.02562 * 23 22 20 42 42 H 1.08995 * 109.74729 * 76.16824 * 25 24 23 43 43 H 1.09007 * 109.74344 * 315.44661 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3601 2.0372 1.2645 5 6 3.7680 1.6698 1.6567 6 1 4.3502 1.0135 1.0267 7 6 4.3129 2.1715 2.8196 8 7 3.6038 2.9702 3.5869 9 14 6.0584 1.7165 3.3053 10 1 7.0060 2.7040 2.7289 11 1 6.1776 1.7218 4.7856 12 1 6.3792 0.3621 2.7877 13 6 2.1533 2.0482 -1.1633 14 8 1.8011 1.5320 -2.2028 15 6 2.7417 3.4356 -1.1725 16 1 3.5621 3.4876 -0.4567 17 6 3.2653 3.7593 -2.5744 18 6 4.0795 5.0575 -2.5350 19 7 3.2856 6.0893 -1.8639 20 6 3.4583 7.4221 -1.8849 21 6 4.5442 8.1571 -2.6276 22 7 2.5255 7.9741 -1.1530 23 6 1.7334 7.0147 -0.6441 24 6 2.1926 5.8335 -1.0753 25 6 1.6599 4.4536 -0.7868 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 2.2867 3.1182 1.1444 32 1 1.6694 1.7103 2.0417 33 1 3.9870 3.3228 4.4053 34 1 3.8996 2.9439 -2.9219 35 1 2.4241 3.8795 -3.2570 36 1 5.0051 4.8919 -1.9837 37 1 4.3112 5.3747 -3.5518 38 1 4.1971 8.4001 -3.6319 39 1 4.7901 9.0761 -2.0958 40 1 5.4309 7.5265 -2.6924 41 1 0.8790 7.1692 -0.0018 42 1 0.7606 4.2753 -1.3763 43 1 1.4292 4.3624 0.2747 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290318258.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:58 Heat of formation + Delta-G solvation = -6.776188 kcal Electronic energy + Delta-G solvation = -24266.261789 eV Core-core repulsion = 20925.104742 eV Total energy + Delta-G solvation = -3341.157047 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.35480 -41.03220 -37.44591 -36.86235 -34.74983 -34.41293 -32.48497 -31.61864 -30.63628 -28.98231 -27.61168 -25.43019 -24.90050 -24.66354 -22.84529 -21.60716 -20.21861 -19.58118 -18.61621 -18.04567 -17.66076 -17.22264 -16.79911 -16.31422 -16.07214 -15.30534 -15.10342 -14.96096 -14.78926 -14.52117 -14.41261 -14.16418 -13.95094 -13.72791 -13.45221 -13.24927 -13.16328 -13.14900 -12.87313 -12.79525 -12.66289 -12.57727 -12.16086 -12.11316 -12.02739 -11.77665 -11.67403 -11.01910 -10.70576 -10.52174 -10.43946 -9.48289 -9.15098 -8.21833 -6.36429 1.07927 1.38504 1.41328 1.50043 1.67727 1.85270 2.12465 2.25887 2.41729 3.08786 3.35630 3.57146 3.60362 3.64817 3.84102 3.98230 4.17406 4.23770 4.28898 4.36573 4.40790 4.50003 4.54000 4.59308 4.63365 4.70224 4.76945 4.81285 4.85890 4.96000 5.00248 5.04658 5.09083 5.12598 5.21108 5.31991 5.43202 5.65035 5.77971 5.83092 6.03773 6.34432 6.56344 6.79199 7.11646 7.26242 7.38575 8.83225 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.006197 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.268085 B = 4517.436079 C = 5813.988452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.110 3.890 3 N -0.596 5.596 4 C 0.246 3.754 5 C -0.547 4.547 6 H 0.054 0.946 7 C 0.023 3.977 8 N -0.917 5.917 9 Si 0.953 3.047 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.269 1.269 13 C 0.521 3.479 14 O -0.587 6.587 15 C -0.104 4.104 16 H 0.090 0.910 17 C -0.103 4.103 18 C 0.104 3.896 19 N -0.453 5.453 20 C 0.200 3.800 21 C -0.063 4.063 22 N -0.531 5.531 23 C -0.043 4.043 24 C -0.024 4.024 25 C -0.024 4.024 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.041 0.959 32 H 0.018 0.982 33 H 0.267 0.733 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.130 0.870 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.175 0.825 42 H 0.085 0.915 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.947 3.450 -11.131 11.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 N -0.325 5.325 4 C 0.125 3.875 5 C -0.585 4.585 6 H 0.072 0.928 7 C -0.178 4.178 8 N -0.556 5.556 9 Si 0.778 3.222 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.193 1.193 13 C 0.309 3.691 14 O -0.470 6.470 15 C -0.126 4.126 16 H 0.109 0.891 17 C -0.141 4.141 18 C -0.017 4.017 19 N -0.137 5.137 20 C -0.062 4.062 21 C -0.121 4.121 22 N -0.252 5.252 23 C -0.190 4.190 24 C -0.139 4.139 25 C -0.063 4.063 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.036 0.964 33 H 0.076 0.924 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.148 0.852 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.193 0.807 42 H 0.103 0.897 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.781 3.996 -11.412 12.116 hybrid contribution 0.691 -1.155 0.951 1.648 sum 1.472 2.841 -10.461 10.939 Atomic orbital electron populations 1.22003 0.94875 1.02954 1.01239 1.21392 0.95102 0.82551 1.02187 1.48285 1.62525 1.14119 1.07588 1.19234 0.94665 0.93551 0.80000 1.21660 0.99665 1.30022 1.07184 0.92770 1.25623 1.01395 0.94686 0.96078 1.70007 1.38503 1.32882 1.14200 0.85635 0.80312 0.78830 0.77412 1.20095 1.20839 1.19315 1.20558 0.77767 0.87902 0.82842 1.90576 1.52978 1.70752 1.32668 1.21305 0.99565 0.91655 1.00053 0.89142 1.21603 1.00840 0.96834 0.94840 1.22235 0.94035 0.85536 0.99885 1.45432 1.23354 1.07605 1.37291 1.23928 1.00243 0.80374 1.01701 1.20337 0.92568 0.99803 0.99393 1.70387 1.06933 1.33250 1.14588 1.22032 1.03111 0.88061 1.05766 1.21030 0.93871 0.97249 1.01741 1.20046 0.96914 0.86827 1.02470 0.93609 0.93027 0.89586 0.90462 0.91504 0.94162 0.96434 0.92425 0.88589 0.90548 0.88746 0.85250 0.88397 0.89077 0.88795 0.80738 0.89658 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.61 10.21 71.98 0.73 -3.88 16 2 C 0.11 3.92 6.07 86.38 0.52 4.45 16 3 N -0.60 -24.07 2.47 -826.16 -2.04 -26.11 16 4 C 0.25 11.37 4.76 85.63 0.41 11.78 16 5 C -0.55 -27.56 9.11 25.60 0.23 -27.33 16 6 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 7 C 0.02 1.18 5.46 84.65 0.46 1.64 16 8 N -0.92 -49.99 13.29 21.45 0.28 -49.71 16 9 Si 0.95 41.01 29.54 68.60 2.03 43.04 16 10 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 13 C 0.52 20.26 6.76 87.66 0.59 20.85 16 14 O -0.59 -24.32 15.90 -3.04 -0.05 -24.37 16 15 C -0.10 -3.58 1.68 -11.34 -0.02 -3.60 16 16 H 0.09 3.56 6.99 -2.39 -0.02 3.55 16 17 C -0.10 -2.79 4.58 30.73 0.14 -2.65 16 18 C 0.10 2.30 6.60 86.48 0.57 2.87 16 19 N -0.45 -13.03 3.13 -500.14 -1.57 -14.59 16 20 C 0.20 5.69 7.94 138.25 1.10 6.79 16 21 C -0.06 -1.09 10.24 71.23 0.73 -0.36 16 22 N -0.53 -18.33 11.27 -188.78 -2.13 -20.46 16 23 C -0.04 -1.48 11.84 83.30 0.99 -0.50 16 24 C -0.02 -0.80 6.57 40.73 0.27 -0.53 16 25 C -0.02 -0.80 5.36 30.01 0.16 -0.64 16 26 H 0.04 1.46 8.14 -2.38 -0.02 1.45 16 27 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.08 2.75 8.04 -2.39 -0.02 2.73 16 30 H 0.07 2.36 7.63 -2.39 -0.02 2.34 16 31 H 0.04 1.92 4.50 -2.38 -0.01 1.91 16 32 H 0.02 0.87 8.12 -2.39 -0.02 0.85 16 33 H 0.27 13.91 8.31 -92.70 -0.77 13.14 16 34 H 0.10 2.49 8.10 -2.39 -0.02 2.47 16 35 H 0.08 2.11 8.11 -2.39 -0.02 2.09 16 36 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.09 1.21 7.95 -2.39 -0.02 1.19 16 41 H 0.18 5.39 8.06 -2.91 -0.02 5.37 16 42 H 0.09 2.70 8.11 -2.39 -0.02 2.68 16 43 H 0.08 3.07 6.23 -2.38 -0.01 3.06 16 Total: -1.00 -64.71 349.05 4.41 -60.30 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.99 Total: 23.01 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 6.89 Total: 8.89 kcal Atomic # 7 Polarization: -105.42 SS G_CDS: -5.45 Total: -110.87 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.05 Total: -24.37 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -64.71 4.41 -60.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290318258.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.519 kcal (2) G-P(sol) polarization free energy of solvation -64.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds