Wall clock time and date at job start Tue Mar 31 2020 07:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40084 * 126.03405 * 2 1 4 4 C 1.30837 * 108.20154 * 179.97438 * 3 2 1 5 5 C 1.39869 * 108.20334 * 359.77616 * 4 3 2 6 6 C 1.34941 * 126.03694 * 179.97438 * 2 1 3 7 7 C 1.50702 * 126.13159 * 359.97438 * 6 2 1 8 8 C 1.53042 * 109.46467 * 144.99498 * 7 6 2 9 9 C 1.53186 * 109.31424 * 181.38755 * 8 7 6 10 10 N 1.46931 * 108.77547 * 305.36982 * 9 8 7 11 11 C 1.34784 * 120.62757 * 233.58511 * 10 9 8 12 12 O 1.21274 * 119.99897 * 359.72693 * 11 10 9 13 13 C 1.50695 * 119.99635 * 179.97438 * 11 10 9 14 14 C 1.53002 * 109.47004 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.47331 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99988 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00042 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00041 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00004 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47274 * 90.00144 * 19 17 15 21 21 H 1.48504 * 109.47383 * 209.99816 * 19 17 15 22 22 H 1.48502 * 109.47297 * 329.99779 * 19 17 15 23 23 C 1.46918 * 118.74146 * 53.86010 * 10 9 8 24 24 C 1.53042 * 109.46093 * 265.07068 * 7 6 2 25 25 H 1.09004 * 109.47270 * 270.02488 * 1 2 3 26 26 H 1.08994 * 109.47208 * 30.02281 * 1 2 3 27 27 H 1.09001 * 109.47142 * 150.02532 * 1 2 3 28 28 H 1.08006 * 125.89724 * 180.02562 * 4 3 2 29 29 H 1.08008 * 126.04090 * 180.23116 * 5 4 3 30 30 H 1.09005 * 109.45960 * 25.02347 * 7 6 2 31 31 H 1.08998 * 109.49049 * 61.43478 * 8 7 6 32 32 H 1.08996 * 109.52462 * 301.35602 * 8 7 6 33 33 H 1.08994 * 109.58817 * 185.58198 * 9 8 7 34 34 H 1.09001 * 109.70649 * 65.22344 * 9 8 7 35 35 H 1.09005 * 109.47403 * 300.00056 * 13 11 10 36 36 H 1.09002 * 109.47422 * 60.00295 * 13 11 10 37 37 H 1.08997 * 109.47244 * 300.00535 * 14 13 11 38 38 H 1.09002 * 109.46787 * 59.99910 * 14 13 11 39 39 H 0.97000 * 120.00297 * 180.02562 * 18 17 15 40 40 H 1.08995 * 109.59003 * 65.92626 * 23 10 9 41 41 H 1.08997 * 109.58851 * 186.35824 * 23 10 9 42 42 H 1.09001 * 109.49569 * 298.55842 * 24 7 6 43 43 H 1.08998 * 109.50167 * 58.62126 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 0.0006 5 6 3.5437 -0.6665 0.0061 6 6 2.2589 -1.0912 0.0005 7 6 1.7974 -2.5258 0.0017 8 6 2.7661 -3.3738 -0.8258 9 6 2.2750 -4.8246 -0.8511 10 7 2.0974 -5.2879 0.5319 11 6 2.6934 -6.4187 0.9592 12 8 3.3801 -7.0670 0.1983 13 6 2.5020 -6.8804 2.3808 14 6 3.2791 -8.1794 2.6042 15 6 3.0872 -8.6415 4.0257 16 1 2.4728 -8.0661 4.7023 17 6 3.6968 -9.7984 4.4627 18 7 4.4454 -10.4988 3.6390 19 14 3.4584 -10.3716 6.2245 20 1 2.2731 -11.2631 6.2989 21 1 4.6647 -11.1136 6.6712 22 1 3.2479 -9.1937 7.1041 23 6 1.2528 -4.4983 1.4385 24 6 1.7598 -3.0481 1.4397 25 1 -0.3634 0.0004 1.0277 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3633 -0.8902 -0.5134 28 1 4.4054 1.3711 0.0011 29 1 4.4211 -1.2963 0.0114 30 1 0.7995 -2.5866 -0.4327 31 1 3.7589 -3.3335 -0.3776 32 1 2.8106 -2.9870 -1.8439 33 1 3.0114 -5.4509 -1.3545 34 1 1.3239 -4.8815 -1.3804 35 1 2.8694 -6.1147 3.0642 36 1 1.4422 -7.0550 2.5667 37 1 2.9114 -8.9448 1.9209 38 1 4.3389 -8.0052 2.4182 39 1 4.8740 -11.3129 3.9463 40 1 0.2195 -4.5267 1.0928 41 1 1.3146 -4.9092 2.4462 42 1 2.7621 -3.0110 1.8665 43 1 1.0881 -2.4290 2.0343 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291669025.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:00 Heat of formation + Delta-G solvation = 27.501611 kcal Electronic energy + Delta-G solvation = -23084.868235 eV Core-core repulsion = 19745.197585 eV Total energy + Delta-G solvation = -3339.670650 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.58058 -39.78872 -37.34209 -33.84452 -33.54092 -33.25019 -31.59037 -30.61350 -29.52522 -26.99817 -26.15809 -24.93079 -23.41937 -22.12983 -21.42202 -20.64570 -19.57573 -18.46067 -17.33442 -16.85258 -15.86544 -15.76490 -15.40699 -15.21380 -14.85893 -14.44950 -14.28871 -14.11486 -13.85003 -13.45641 -13.32052 -13.08663 -12.93293 -12.67552 -12.50234 -12.13059 -12.07594 -11.48283 -11.41556 -11.22560 -10.97809 -10.93556 -10.91373 -10.68403 -10.58320 -9.96562 -9.63075 -9.46135 -9.18090 -8.99458 -8.70380 -8.47173 -8.31612 -5.96278 -4.00753 1.64321 2.26849 2.65102 3.19374 3.24873 3.32946 3.39353 3.41802 4.17041 4.27092 4.42612 4.46978 4.57034 4.78223 4.87534 4.91628 4.92353 5.07640 5.14365 5.18319 5.36963 5.38490 5.38718 5.45019 5.54041 5.64210 5.65726 5.67543 5.87729 5.90093 5.96915 6.16771 6.19667 6.20910 6.45617 6.70907 6.77224 6.89710 7.49838 7.72078 7.74264 7.86030 8.06991 8.38080 8.72968 9.07736 9.62823 11.14690 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026828 B = 0.002945 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.418699 B = 9505.947800 C = 9824.182482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.374 5.374 3 N -0.304 5.304 4 C 0.047 3.953 5 C -0.269 4.269 6 C 0.095 3.905 7 C -0.023 4.023 8 C -0.120 4.120 9 C 0.111 3.889 10 N -0.626 5.626 11 C 0.513 3.487 12 O -0.533 6.533 13 C -0.129 4.129 14 C 0.037 3.963 15 C -0.527 4.527 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.111 3.889 24 C -0.124 4.124 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.182 0.818 29 H 0.147 0.853 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.261 0.739 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.821 21.587 -8.362 24.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.157 5.157 3 N -0.125 5.125 4 C -0.139 4.139 5 C -0.298 4.298 6 C -0.032 4.032 7 C -0.043 4.043 8 C -0.159 4.159 9 C -0.012 4.012 10 N -0.363 5.363 11 C 0.304 3.696 12 O -0.408 6.408 13 C -0.169 4.169 14 C -0.001 4.001 15 C -0.565 4.565 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.013 4.013 24 C -0.163 4.163 25 H 0.093 0.907 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.199 0.801 29 H 0.165 0.835 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.041 0.959 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.115 0.885 42 H 0.096 0.904 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.270 22.079 -8.784 25.507 hybrid contribution 0.371 -0.830 0.983 1.339 sum -8.900 21.249 -7.802 24.323 Atomic orbital electron populations 1.21840 0.74650 1.04343 1.03427 1.48485 1.06423 1.03446 1.57334 1.77355 1.01924 1.07874 1.25329 1.23836 0.95171 0.95189 0.99698 1.21270 0.96484 0.94881 1.17205 1.21079 0.91326 0.90000 1.00802 1.19832 0.99919 0.87040 0.97540 1.21937 0.99366 0.94473 1.00141 1.21477 1.01589 0.94164 0.83963 1.48311 1.50825 1.25530 1.11594 1.21587 0.77752 0.78832 0.91441 1.90658 1.38552 1.54313 1.57264 1.21885 1.02852 1.02194 0.89933 1.18906 0.95465 0.89310 0.96383 1.21213 1.30425 1.08314 0.96569 0.92638 1.25023 0.95200 0.96690 0.97462 1.69996 1.31778 1.15987 1.35056 0.86599 0.77601 0.78803 0.84987 1.20687 1.21221 1.19879 1.21766 0.93734 0.90186 0.95597 1.22049 1.03299 0.96085 0.94878 0.90690 0.89383 0.89532 0.80110 0.83524 0.90076 0.90535 0.90603 0.88651 0.92089 0.90265 0.90304 0.95853 0.95835 0.92942 0.91627 0.88542 0.90397 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.60 11.27 59.85 0.67 1.27 16 2 N -0.37 -3.73 4.01 -63.88 -0.26 -3.99 16 3 N -0.30 -3.57 12.58 30.63 0.39 -3.18 16 4 C 0.05 0.48 12.03 -17.37 -0.21 0.27 16 5 C -0.27 -2.76 9.98 -40.01 -0.40 -3.16 16 6 C 0.10 0.93 5.85 -82.27 -0.48 0.45 16 7 C -0.02 -0.19 2.34 -91.73 -0.21 -0.41 16 8 C -0.12 -1.14 4.92 -26.61 -0.13 -1.27 16 9 C 0.11 1.30 6.43 -3.71 -0.02 1.27 16 10 N -0.63 -8.64 2.97 -172.51 -0.51 -9.15 16 11 C 0.51 9.76 7.70 -10.98 -0.08 9.68 16 12 O -0.53 -12.41 15.40 5.56 0.09 -12.33 16 13 C -0.13 -2.57 3.98 -27.88 -0.11 -2.68 16 14 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 15 C -0.53 -14.83 9.11 -34.44 -0.31 -15.14 16 16 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 19 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C 0.11 1.13 6.37 -3.49 -0.02 1.11 16 24 C -0.12 -1.10 5.36 -26.38 -0.14 -1.24 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.09 0.36 6.98 -51.93 -0.36 -0.01 16 28 H 0.18 1.30 8.06 -52.48 -0.42 0.88 16 29 H 0.15 1.37 7.42 -52.48 -0.39 0.98 16 30 H 0.08 0.57 6.95 -51.93 -0.36 0.21 16 31 H 0.08 0.81 7.36 -51.93 -0.38 0.43 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.10 1.33 7.01 -51.93 -0.36 0.96 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.08 1.45 7.70 -51.93 -0.40 1.05 16 36 H 0.08 1.43 7.93 -51.93 -0.41 1.02 16 37 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 38 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 1.02 5.93 -51.93 -0.31 0.71 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 348.73 15.07 5.26 5.26 Total: -1.00 -35.86 348.73 -7.74 -43.60 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -6.74 Total: -2.70 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -1.67 Total: -7.41 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.35 Total: -42.94 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.86 -7.74 -43.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291669025.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.105 kcal (2) G-P(sol) polarization free energy of solvation -35.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds