Wall clock time and date at job start Tue Mar 31 2020 07:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40072 * 126.04726 * 2 1 4 4 C 1.30851 * 108.37071 * 179.97438 * 3 2 1 5 5 C 1.50706 * 125.83113 * 179.97438 * 4 3 2 6 6 C 1.54268 * 110.02982 * 212.92656 * 5 4 3 7 7 C 1.54955 * 104.16186 * 217.13602 * 6 5 4 8 8 C 1.54896 * 102.77529 * 37.89398 * 7 6 5 9 9 C 1.53879 * 110.02996 * 95.71565 * 5 4 3 10 10 C 1.39753 * 108.32630 * 0.26250 * 4 3 2 11 11 C 1.35268 * 126.04878 * 179.97438 * 2 1 3 12 12 N 1.39471 * 126.21156 * 0.07732 * 11 2 1 13 13 C 1.34776 * 119.99775 * 180.02562 * 12 11 2 14 14 O 1.21298 * 120.00097 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00426 * 179.97438 * 13 12 11 16 16 C 1.52994 * 109.47489 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47491 * 179.97438 * 16 15 13 18 18 H 1.08010 * 119.99581 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00583 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99594 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00299 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47435 * 90.00173 * 21 19 17 23 23 H 1.48503 * 109.47168 * 210.00221 * 21 19 17 24 24 H 1.48504 * 109.47163 * 330.00229 * 21 19 17 25 25 H 1.09004 * 109.46883 * 90.02822 * 1 2 3 26 26 H 1.09005 * 109.46944 * 210.02550 * 1 2 3 27 27 H 1.08995 * 109.47271 * 330.02599 * 1 2 3 28 28 H 1.08997 * 110.01895 * 334.32233 * 5 4 3 29 29 H 1.08996 * 110.48781 * 335.79456 * 6 5 4 30 30 H 1.09009 * 110.48199 * 98.42810 * 6 5 4 31 31 H 1.08997 * 110.72729 * 279.57965 * 7 6 5 32 32 H 1.09006 * 110.76838 * 156.22371 * 7 6 5 33 33 H 1.08999 * 110.48312 * 203.40273 * 8 7 6 34 34 H 1.08992 * 110.60234 * 80.81898 * 8 7 6 35 35 H 1.09000 * 110.02581 * 238.56449 * 9 5 4 36 36 H 1.08999 * 110.03426 * 359.97438 * 9 5 4 37 37 H 1.08008 * 126.08080 * 179.74170 * 10 4 3 38 38 H 0.96997 * 120.00740 * 359.97438 * 12 11 2 39 39 H 1.09003 * 109.46977 * 299.99994 * 15 13 12 40 40 H 1.09002 * 109.46890 * 59.99697 * 15 13 12 41 41 H 1.08995 * 109.47455 * 300.00430 * 16 15 13 42 42 H 1.09002 * 109.47009 * 60.00129 * 16 15 13 43 43 H 0.96998 * 119.99817 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1325 0.0000 4 6 3.5359 0.7352 0.0006 5 6 4.7475 1.6315 0.0002 6 6 5.8960 0.9671 -0.7869 7 6 7.1711 1.3543 0.0039 8 6 6.6969 1.2791 1.4765 9 6 5.2565 1.8302 1.4387 10 6 3.5518 -0.6622 -0.0051 11 6 2.2610 -1.0937 0.0005 12 7 1.8360 -2.4221 -0.0004 13 6 2.7424 -3.4195 0.0007 14 8 3.9277 -3.1619 0.0021 15 6 2.2834 -4.8549 0.0003 16 6 3.5019 -5.7800 0.0012 17 6 3.0429 -7.2154 0.0014 18 1 1.9875 -7.4448 0.0006 19 6 3.9702 -8.2358 0.0017 20 7 5.2553 -7.9564 0.0022 21 14 3.4011 -10.0150 0.0012 22 1 3.2509 -10.4864 -1.3990 23 1 4.4049 -10.8560 0.7016 24 1 2.0951 -10.1172 0.7007 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8898 0.5143 27 1 -0.3633 0.8902 0.5134 28 1 4.4987 2.5951 -0.4443 29 1 5.7711 -0.1155 -0.8030 30 1 5.9411 1.3620 -1.8020 31 1 7.4892 2.3658 -0.2484 32 1 7.9726 0.6388 -0.1808 33 1 7.3268 1.9013 2.1123 34 1 6.7017 0.2477 1.8288 35 1 5.2556 2.8903 1.6919 36 1 4.6270 1.2787 2.1371 37 1 4.4319 -1.2883 -0.0101 38 1 0.8882 -2.6282 -0.0012 39 1 1.6823 -5.0443 0.8896 40 1 1.6843 -5.0445 -0.8904 41 1 4.1028 -5.5905 -0.8882 42 1 4.1013 -5.5906 0.8917 43 1 5.9077 -8.6743 0.0020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291970027.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:42 Heat of formation + Delta-G solvation = 21.394970 kcal Electronic energy + Delta-G solvation = -22967.281363 eV Core-core repulsion = 19627.345909 eV Total energy + Delta-G solvation = -3339.935454 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.46399 -39.27272 -37.93381 -34.70681 -33.60258 -33.09855 -31.23388 -29.45403 -28.91271 -28.48202 -25.98476 -25.73922 -22.73054 -21.57078 -20.80878 -20.24792 -19.88267 -18.91805 -17.59378 -16.82028 -16.02091 -15.78908 -15.60652 -15.01376 -14.94209 -14.84298 -14.48011 -13.83381 -13.53359 -13.31169 -13.03876 -12.91716 -12.55358 -12.43085 -12.25533 -11.54880 -11.33523 -11.27949 -11.09062 -11.04469 -10.98981 -10.84067 -10.66137 -10.60400 -10.51704 -10.27356 -10.08017 -9.71935 -9.31517 -9.16495 -8.71202 -8.38744 -7.90272 -6.02361 -4.07425 1.86857 2.24533 2.81965 3.24039 3.26593 3.29681 3.36438 3.38462 4.34648 4.41976 4.59155 4.68691 4.73615 4.96657 5.07369 5.13267 5.22694 5.33003 5.42310 5.47064 5.55263 5.62402 5.69839 5.74768 5.78717 5.92561 5.95101 6.01277 6.03289 6.06370 6.13668 6.23093 6.30236 6.37490 6.46054 6.71665 6.91714 7.14723 7.47994 7.66092 7.74713 7.91250 7.98087 8.27394 8.45628 9.00025 9.56684 11.08471 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.003456 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.563514 B = 8099.648533 C = 9459.596297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.398 5.398 3 N -0.303 5.303 4 C 0.097 3.903 5 C -0.009 4.009 6 C -0.120 4.120 7 C -0.124 4.124 8 C -0.125 4.125 9 C -0.111 4.111 10 C -0.279 4.279 11 C 0.314 3.686 12 N -0.661 5.661 13 C 0.515 3.485 14 O -0.495 6.495 15 C -0.124 4.124 16 C 0.036 3.964 17 C -0.530 4.530 18 H 0.056 0.944 19 C 0.060 3.940 20 N -0.888 5.888 21 Si 0.894 3.106 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.175 0.825 38 H 0.407 0.593 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.019 19.125 0.598 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.186 5.186 3 N -0.125 5.125 4 C -0.069 4.069 5 C -0.029 4.029 6 C -0.158 4.158 7 C -0.161 4.161 8 C -0.162 4.162 9 C -0.150 4.150 10 C -0.310 4.310 11 C 0.095 3.905 12 N -0.310 5.310 13 C 0.304 3.696 14 O -0.366 6.366 15 C -0.164 4.164 16 C -0.001 4.001 17 C -0.568 4.568 18 H 0.075 0.925 19 C -0.143 4.143 20 N -0.526 5.526 21 Si 0.721 3.279 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.192 0.808 38 H 0.242 0.758 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.917 20.107 0.602 20.968 hybrid contribution -0.649 -1.824 -0.014 1.936 sum -6.567 18.283 0.589 19.436 Atomic orbital electron populations 1.21738 0.74956 1.04159 1.03064 1.48388 1.05938 1.02409 1.61899 1.77318 1.01294 1.05303 1.28614 1.22130 0.92793 0.93892 0.98089 1.20151 0.89577 0.96487 0.96728 1.22524 0.92979 1.02143 0.98194 1.22491 0.97442 1.01142 0.95037 1.22369 0.95491 1.01579 0.96803 1.22131 0.96446 1.00844 0.95529 1.21542 0.96007 0.94034 1.19443 1.18219 0.90930 0.80736 1.00649 1.43499 1.11307 1.01905 1.74331 1.21887 0.85804 0.87635 0.74298 1.90626 1.16829 1.83754 1.45365 1.21925 1.03833 0.87561 1.03042 1.18941 0.90521 0.91732 0.98933 1.21165 0.92856 0.90921 1.51886 0.92545 1.25013 0.94880 0.99213 0.95159 1.69990 1.00321 1.32460 1.49827 0.86580 0.78428 0.84769 0.78104 1.20638 1.21169 1.19883 0.91014 0.90227 0.89151 0.89936 0.89898 0.91553 0.91716 0.91274 0.91849 0.91139 0.91657 0.91579 0.80810 0.75836 0.89633 0.89626 0.95543 0.95544 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.87 11.28 59.84 0.68 1.55 16 2 N -0.40 -5.48 4.02 -67.18 -0.27 -5.75 16 3 N -0.30 -4.65 12.57 33.65 0.42 -4.23 16 4 C 0.10 1.47 5.93 -82.44 -0.49 0.99 16 5 C -0.01 -0.11 3.43 -90.65 -0.31 -0.42 16 6 C -0.12 -1.41 6.31 -25.04 -0.16 -1.57 16 7 C -0.12 -1.24 6.91 -24.70 -0.17 -1.41 16 8 C -0.12 -1.30 6.83 -25.07 -0.17 -1.48 16 9 C -0.11 -1.24 6.45 -25.61 -0.17 -1.40 16 10 C -0.28 -4.74 8.61 -39.78 -0.34 -5.09 16 11 C 0.31 4.91 7.66 -153.16 -1.17 3.74 16 12 N -0.66 -9.41 5.42 -11.46 -0.06 -9.47 16 13 C 0.51 9.35 7.79 -10.99 -0.09 9.27 16 14 O -0.50 -10.88 13.11 5.54 0.07 -10.81 16 15 C -0.12 -2.30 5.64 -27.89 -0.16 -2.46 16 16 C 0.04 0.93 4.26 -27.89 -0.12 0.81 16 17 C -0.53 -14.46 9.11 -34.44 -0.31 -14.77 16 18 H 0.06 1.44 7.74 -52.48 -0.41 1.04 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 21 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.50 7.50 -51.93 -0.39 0.11 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.08 1.14 6.07 -51.93 -0.32 0.83 16 30 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.83 7.67 -51.93 -0.40 0.44 16 37 H 0.17 3.30 4.82 -52.48 -0.25 3.05 16 38 H 0.41 4.13 7.97 -40.82 -0.33 3.81 16 39 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 40 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 41 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 42 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 350.77 15.07 5.29 5.29 Total: -1.00 -33.92 350.77 -8.63 -42.55 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.71 Total: 2.90 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -3.08 Total: -10.67 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 0.83 Total: -45.36 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.07 Total: -10.81 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.92 -8.63 -42.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291970027.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.941 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds