Wall clock time and date at job start Tue Mar 31 2020 07:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40072 * 126.04726 * 2 1 4 4 C 1.30851 * 108.37071 * 179.97438 * 3 2 1 5 5 C 1.50706 * 125.83113 * 179.97438 * 4 3 2 6 6 C 1.54268 * 110.02982 * 212.92656 * 5 4 3 7 7 C 1.54955 * 104.16186 * 217.13602 * 6 5 4 8 8 C 1.54896 * 102.77529 * 37.89398 * 7 6 5 9 9 C 1.53879 * 110.02996 * 95.71565 * 5 4 3 10 10 C 1.39753 * 108.32630 * 0.26250 * 4 3 2 11 11 C 1.35268 * 126.04878 * 179.97438 * 2 1 3 12 12 N 1.39471 * 126.21156 * 0.07732 * 11 2 1 13 13 C 1.34776 * 119.99775 * 180.02562 * 12 11 2 14 14 O 1.21298 * 120.00097 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00426 * 179.97438 * 13 12 11 16 16 C 1.52994 * 109.47489 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47491 * 179.97438 * 16 15 13 18 18 H 1.08010 * 119.99581 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00583 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99594 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00299 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47435 * 90.00173 * 21 19 17 23 23 H 1.48503 * 109.47168 * 210.00221 * 21 19 17 24 24 H 1.48504 * 109.47163 * 330.00229 * 21 19 17 25 25 H 1.09004 * 109.46883 * 90.02822 * 1 2 3 26 26 H 1.09005 * 109.46944 * 210.02550 * 1 2 3 27 27 H 1.08995 * 109.47271 * 330.02599 * 1 2 3 28 28 H 1.08997 * 110.01895 * 334.32233 * 5 4 3 29 29 H 1.08996 * 110.48781 * 335.79456 * 6 5 4 30 30 H 1.09009 * 110.48199 * 98.42810 * 6 5 4 31 31 H 1.08997 * 110.72729 * 279.57965 * 7 6 5 32 32 H 1.09006 * 110.76838 * 156.22371 * 7 6 5 33 33 H 1.08999 * 110.48312 * 203.40273 * 8 7 6 34 34 H 1.08992 * 110.60234 * 80.81898 * 8 7 6 35 35 H 1.09000 * 110.02581 * 238.56449 * 9 5 4 36 36 H 1.08999 * 110.03426 * 359.97438 * 9 5 4 37 37 H 1.08008 * 126.08080 * 179.74170 * 10 4 3 38 38 H 0.96997 * 120.00740 * 359.97438 * 12 11 2 39 39 H 1.09003 * 109.46977 * 299.99994 * 15 13 12 40 40 H 1.09002 * 109.46890 * 59.99697 * 15 13 12 41 41 H 1.08995 * 109.47455 * 300.00430 * 16 15 13 42 42 H 1.09002 * 109.47009 * 60.00129 * 16 15 13 43 43 H 0.96998 * 119.99817 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1325 0.0000 4 6 3.5359 0.7352 0.0006 5 6 4.7475 1.6315 0.0002 6 6 5.8960 0.9671 -0.7869 7 6 7.1711 1.3543 0.0039 8 6 6.6969 1.2791 1.4765 9 6 5.2565 1.8302 1.4387 10 6 3.5518 -0.6622 -0.0051 11 6 2.2610 -1.0937 0.0005 12 7 1.8360 -2.4221 -0.0004 13 6 2.7424 -3.4195 0.0007 14 8 3.9277 -3.1619 0.0021 15 6 2.2834 -4.8549 0.0003 16 6 3.5019 -5.7800 0.0012 17 6 3.0429 -7.2154 0.0014 18 1 1.9875 -7.4448 0.0006 19 6 3.9702 -8.2358 0.0017 20 7 5.2553 -7.9564 0.0022 21 14 3.4011 -10.0150 0.0012 22 1 3.2509 -10.4864 -1.3990 23 1 4.4049 -10.8560 0.7016 24 1 2.0951 -10.1172 0.7007 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8898 0.5143 27 1 -0.3633 0.8902 0.5134 28 1 4.4987 2.5951 -0.4443 29 1 5.7711 -0.1155 -0.8030 30 1 5.9411 1.3620 -1.8020 31 1 7.4892 2.3658 -0.2484 32 1 7.9726 0.6388 -0.1808 33 1 7.3268 1.9013 2.1123 34 1 6.7017 0.2477 1.8288 35 1 5.2556 2.8903 1.6919 36 1 4.6270 1.2787 2.1371 37 1 4.4319 -1.2883 -0.0101 38 1 0.8882 -2.6282 -0.0012 39 1 1.6823 -5.0443 0.8896 40 1 1.6843 -5.0445 -0.8904 41 1 4.1028 -5.5905 -0.8882 42 1 4.1013 -5.5906 0.8917 43 1 5.9077 -8.6743 0.0020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291970027.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:41 Heat of formation + Delta-G solvation = 0.364876 kcal Electronic energy + Delta-G solvation = -22968.193296 eV Core-core repulsion = 19627.345909 eV Total energy + Delta-G solvation = -3340.847387 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.65226 -40.69407 -38.89035 -36.05724 -35.59065 -34.11314 -33.11275 -30.52844 -29.98791 -29.48787 -27.71530 -26.80626 -24.40547 -22.84890 -21.88923 -21.52590 -21.03837 -20.13815 -18.78704 -18.58263 -17.45254 -17.10898 -16.69658 -16.46558 -16.19516 -16.05409 -15.92665 -15.22164 -14.72056 -14.41735 -14.25441 -14.19599 -13.83453 -13.71417 -13.38585 -13.24554 -12.83657 -12.59179 -12.49151 -12.28112 -11.97876 -11.96668 -11.93711 -11.86241 -11.80031 -11.64738 -11.43055 -11.34543 -11.24546 -10.81839 -10.55201 -9.77935 -9.16850 -8.17015 -6.30599 0.62509 1.11986 1.44344 1.46109 1.52249 1.56897 1.93981 2.12620 2.44466 3.16940 3.36742 3.60943 3.77795 3.79292 3.96079 4.23192 4.36269 4.38840 4.47512 4.51747 4.54234 4.57882 4.61066 4.64574 4.70009 4.79872 4.84302 4.91135 5.00512 5.01464 5.07444 5.10314 5.25871 5.33210 5.44045 5.51391 5.53683 5.62563 5.73295 5.85632 5.96812 6.17089 6.29515 6.73235 6.87240 7.07739 7.39787 8.95503 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.003456 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.563514 B = 8099.648533 C = 9459.596297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.389 5.389 3 N -0.313 5.313 4 C 0.094 3.906 5 C -0.010 4.010 6 C -0.121 4.121 7 C -0.118 4.118 8 C -0.125 4.125 9 C -0.106 4.106 10 C -0.308 4.308 11 C 0.306 3.694 12 N -0.636 5.636 13 C 0.518 3.482 14 O -0.543 6.543 15 C -0.109 4.109 16 C 0.040 3.960 17 C -0.542 4.542 18 H 0.079 0.921 19 C -0.005 4.005 20 N -0.936 5.936 21 Si 0.971 3.029 22 H -0.273 1.273 23 H -0.289 1.289 24 H -0.254 1.254 25 H 0.090 0.910 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.088 0.912 36 H 0.045 0.955 37 H 0.146 0.854 38 H 0.430 0.570 39 H 0.115 0.885 40 H 0.116 0.884 41 H -0.014 1.014 42 H -0.014 1.014 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.779 19.742 0.616 21.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.177 5.177 3 N -0.136 5.136 4 C -0.072 4.072 5 C -0.031 4.031 6 C -0.160 4.160 7 C -0.155 4.155 8 C -0.162 4.162 9 C -0.145 4.145 10 C -0.340 4.340 11 C 0.085 3.915 12 N -0.287 5.287 13 C 0.308 3.692 14 O -0.417 6.417 15 C -0.149 4.149 16 C 0.002 3.998 17 C -0.579 4.579 18 H 0.097 0.903 19 C -0.203 4.203 20 N -0.576 5.576 21 Si 0.795 3.205 22 H -0.198 1.198 23 H -0.214 1.214 24 H -0.178 1.178 25 H 0.108 0.892 26 H 0.125 0.875 27 H 0.121 0.879 28 H 0.115 0.885 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.163 0.837 38 H 0.269 0.731 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.004 0.996 42 H 0.004 0.996 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.772 20.754 0.620 22.540 hybrid contribution 0.170 -1.958 -0.026 1.966 sum -8.602 18.795 0.594 20.679 Atomic orbital electron populations 1.22244 0.71728 1.06240 1.04937 1.48727 1.07548 1.01090 1.60329 1.77257 1.01401 1.06147 1.28823 1.22444 0.93698 0.93426 0.97610 1.20295 0.88667 0.96494 0.97594 1.22501 0.94016 1.00237 0.99198 1.22492 0.96413 1.02373 0.94242 1.22368 0.95671 1.00664 0.97530 1.22114 0.96189 1.01906 0.94292 1.21461 0.96162 0.95019 1.21319 1.18150 0.91103 0.81455 1.00821 1.42986 1.11927 1.00804 1.72963 1.21736 0.85448 0.88248 0.73812 1.90648 1.19028 1.84379 1.47675 1.21670 1.01037 0.86276 1.05887 1.18727 0.92506 0.93415 0.95147 1.21691 0.93931 0.91576 1.50742 0.90317 1.26093 0.94841 1.04654 0.94719 1.70172 1.01981 1.34052 1.51444 0.85359 0.78448 0.78232 0.78434 1.19849 1.21446 1.17819 0.89185 0.87505 0.87859 0.88477 0.92998 0.90486 0.89304 0.91510 0.89677 0.93419 0.89347 0.93636 0.83668 0.73089 0.86648 0.86641 0.99559 0.99566 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.21 11.28 127.77 1.44 2.66 16 2 N -0.39 -10.08 4.02 -366.46 -1.47 -11.56 16 3 N -0.31 -9.36 12.57 -47.45 -0.60 -9.95 16 4 C 0.09 2.90 5.93 43.07 0.26 3.15 16 5 C -0.01 -0.25 3.43 -10.81 -0.04 -0.29 16 6 C -0.12 -2.94 6.31 31.69 0.20 -2.74 16 7 C -0.12 -2.33 6.91 31.91 0.22 -2.11 16 8 C -0.12 -2.61 6.83 31.67 0.22 -2.40 16 9 C -0.11 -2.34 6.45 31.32 0.20 -2.14 16 10 C -0.31 -10.99 8.61 22.14 0.19 -10.79 16 11 C 0.31 9.46 7.66 131.31 1.01 10.46 16 12 N -0.64 -17.31 5.42 -308.56 -1.67 -18.98 16 13 C 0.52 19.00 7.79 87.66 0.68 19.68 16 14 O -0.54 -25.44 13.11 -3.09 -0.04 -25.48 16 15 C -0.11 -3.96 5.64 29.85 0.17 -3.79 16 16 C 0.04 2.10 4.26 29.85 0.13 2.23 16 17 C -0.54 -29.49 9.11 25.60 0.23 -29.25 16 18 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 19 C -0.01 -0.31 5.46 84.65 0.46 0.16 16 20 N -0.94 -58.19 13.29 21.45 0.28 -57.91 16 21 Si 0.97 43.14 29.54 68.60 2.03 45.17 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.25 -10.42 7.11 99.48 0.71 -9.72 16 25 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.11 0.90 7.50 -2.38 -0.02 0.88 16 27 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.05 1.58 6.07 -2.39 -0.01 1.57 16 30 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 34 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.04 1.18 7.67 -2.39 -0.02 1.16 16 37 H 0.15 6.08 4.82 -2.91 -0.01 6.07 16 38 H 0.43 7.39 7.97 -92.71 -0.74 6.65 16 39 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 40 H 0.12 3.54 8.14 -2.39 -0.02 3.52 16 41 H -0.01 -0.84 8.10 -2.39 -0.02 -0.86 16 42 H -0.01 -0.85 8.10 -2.39 -0.02 -0.87 16 43 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -78.33 350.77 4.17 -74.16 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.27 Total: 19.72 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: 5.37 Total: -15.17 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -3.46 Total: -98.40 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.04 Total: -25.48 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -78.33 4.17 -74.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291970027.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.528 kcal (2) G-P(sol) polarization free energy of solvation -78.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds