Wall clock time and date at job start Tue Mar 31 2020 07:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50705 * 119.99676 * 2 1 4 4 N 1.46903 * 109.47208 * 124.56123 * 3 2 1 5 5 C 1.46902 * 110.99597 * 292.53824 * 4 3 2 6 6 C 1.50696 * 109.47406 * 297.20477 * 5 4 3 7 7 H 1.08001 * 119.99611 * 4.78618 * 6 5 4 8 8 C 1.37878 * 120.00412 * 184.79246 * 6 5 4 9 9 N 1.31510 * 120.00265 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99575 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.46972 * 90.00149 * 10 8 6 12 12 H 1.48498 * 109.46967 * 210.00383 * 10 8 6 13 13 H 1.48494 * 109.47312 * 330.00344 * 10 8 6 14 14 C 1.46905 * 110.99819 * 56.49066 * 4 3 2 15 15 C 1.50696 * 109.46975 * 66.05080 * 14 4 3 16 16 C 1.35452 * 125.56447 * 264.97076 * 15 14 4 17 17 C 1.39828 * 107.86984 * 180.02562 * 16 15 14 18 18 C 1.37879 * 107.08341 * 359.75862 * 17 16 15 19 19 C 1.46672 * 126.23389 * 180.23546 * 18 17 16 20 20 O 1.21690 * 120.00484 * 349.60895 * 19 18 17 21 21 N 1.34783 * 120.00179 * 169.60493 * 19 18 17 22 22 C 1.46496 * 120.00214 * 180.43589 * 21 19 18 23 23 C 1.46501 * 119.99488 * 0.43568 * 21 19 18 24 24 N 1.35530 * 125.56621 * 84.99683 * 15 14 4 25 25 H 0.97002 * 125.67847 * 359.95309 * 24 15 14 26 26 H 1.07990 * 119.99971 * 359.97438 * 1 2 3 27 27 H 1.07994 * 119.99754 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.00688 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47462 * 4.55696 * 3 2 1 30 30 H 1.09005 * 109.46794 * 244.55769 * 3 2 1 31 31 H 1.09002 * 109.46980 * 57.20823 * 5 4 3 32 32 H 1.09003 * 109.46805 * 177.20212 * 5 4 3 33 33 H 0.97001 * 120.00272 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.47109 * 306.04508 * 14 4 3 35 35 H 1.08997 * 109.46665 * 186.04546 * 14 4 3 36 36 H 1.08003 * 126.06164 * 0.04305 * 16 15 14 37 37 H 1.07998 * 126.46349 * 180.02562 * 17 16 15 38 38 H 1.08994 * 109.47470 * 59.99964 * 22 21 19 39 39 H 1.09000 * 109.47106 * 180.02562 * 22 21 19 40 40 H 1.09005 * 109.46946 * 299.99898 * 22 21 19 41 41 H 1.09006 * 109.47117 * 83.20974 * 23 21 19 42 42 H 1.08998 * 109.47030 * 203.20876 * 23 21 19 43 43 H 1.08995 * 109.47599 * 323.20871 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9888 1.3365 1.1406 5 6 2.2551 1.3903 2.4122 6 6 1.4551 2.6657 2.4770 7 1 1.4267 3.3291 1.6253 8 6 0.7595 2.9857 3.6236 9 7 0.0618 4.0990 3.6804 10 14 0.8083 1.8379 5.0966 11 1 1.9433 2.2119 5.9782 12 1 -0.4643 1.9496 5.8535 13 1 0.9849 0.4396 4.6289 14 6 3.9030 0.1870 1.1084 15 6 4.8086 0.2989 -0.0909 16 6 4.5984 -0.2866 -1.2941 17 6 5.6628 0.0602 -2.1319 18 6 6.5067 0.8691 -1.4008 19 6 7.7545 1.4753 -1.8769 20 8 8.2285 1.1337 -2.9444 21 7 8.3764 2.4109 -1.1321 22 6 9.6176 3.0233 -1.6121 23 6 7.8109 2.8154 0.1574 24 7 5.9665 1.0014 -0.1416 25 1 6.3488 1.5153 0.5869 26 1 -0.5399 0.9352 0.0004 27 1 -0.5399 -0.9353 0.0004 28 1 1.8501 -0.9352 -0.0004 29 1 1.3580 2.1320 0.0816 30 1 2.6275 1.3991 -0.9281 31 1 1.5823 0.5354 2.4799 32 1 2.9624 1.3625 3.2411 33 1 -0.4279 4.3240 4.4869 34 1 3.3254 -0.7350 1.0429 35 1 4.5041 0.1755 2.0176 36 1 3.7576 -0.9105 -1.5594 37 1 5.7964 -0.2443 -3.1594 38 1 9.4321 3.5239 -2.5624 39 1 9.9704 3.7505 -0.8808 40 1 10.3742 2.2508 -1.7500 41 1 8.1190 2.1078 0.9272 42 1 8.1698 3.8117 0.4151 43 1 6.7231 2.8274 0.0895 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292710717.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:28 Heat of formation + Delta-G solvation = 66.326339 kcal Electronic energy + Delta-G solvation = -23439.251066 eV Core-core repulsion = 20101.263983 eV Total energy + Delta-G solvation = -3337.987084 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.49862 -39.26112 -37.41577 -35.85755 -32.86459 -32.40233 -31.26180 -30.36048 -28.47404 -27.64219 -26.81813 -25.68462 -23.64017 -21.33567 -20.79638 -20.69605 -19.86250 -18.71476 -17.47871 -16.80691 -16.28386 -16.04063 -15.69512 -15.06394 -14.87506 -14.31613 -14.14989 -13.85566 -13.71023 -13.47605 -13.23819 -12.93060 -12.79776 -12.72521 -12.51771 -12.43158 -12.13746 -12.01385 -11.68220 -11.28272 -11.10361 -10.77240 -10.57205 -10.50586 -10.18349 -9.95579 -9.34215 -9.05634 -8.89468 -8.77300 -8.63164 -7.99296 -7.48742 -6.11554 -4.09133 1.51575 2.72703 2.75112 2.84663 3.22039 3.23778 3.30969 3.32061 3.41924 4.35652 4.44365 4.67996 4.79719 4.91828 5.02303 5.09102 5.22764 5.25804 5.32403 5.35111 5.43516 5.50333 5.53569 5.64099 5.73752 5.87508 6.09317 6.12145 6.19438 6.31921 6.37089 6.57792 6.75873 6.89009 6.93885 7.02569 7.10274 7.16400 7.26381 7.46597 7.48500 7.80394 7.91907 8.01763 8.56189 8.95375 9.49697 11.01282 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018612 B = 0.004084 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.027219 B = 6854.926221 C = 7788.733542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.185 4.185 3 C 0.085 3.915 4 N -0.517 5.517 5 C 0.162 3.838 6 C -0.508 4.508 7 H 0.080 0.920 8 C 0.071 3.929 9 N -0.899 5.899 10 Si 0.873 3.127 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.268 1.268 14 C 0.101 3.899 15 C 0.084 3.916 16 C -0.209 4.209 17 C -0.100 4.100 18 C -0.070 4.070 19 C 0.592 3.408 20 O -0.535 6.535 21 N -0.625 5.625 22 C 0.092 3.908 23 C 0.055 3.945 24 N -0.533 5.533 25 H 0.420 0.580 26 H 0.101 0.899 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.070 0.930 31 H -0.005 1.005 32 H 0.022 0.978 33 H 0.264 0.736 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.086 0.914 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.378 -6.041 -6.399 16.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.205 4.205 3 C -0.042 4.042 4 N -0.240 5.240 5 C 0.036 3.964 6 C -0.546 4.546 7 H 0.098 0.902 8 C -0.131 4.131 9 N -0.538 5.538 10 Si 0.700 3.300 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.193 1.193 14 C -0.028 4.028 15 C -0.035 4.035 16 C -0.234 4.234 17 C -0.127 4.127 18 C -0.182 4.182 19 C 0.383 3.617 20 O -0.411 6.411 21 N -0.359 5.359 22 C -0.050 4.050 23 C -0.088 4.088 24 N -0.137 5.137 25 H 0.265 0.735 26 H 0.119 0.881 27 H 0.103 0.897 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.088 0.912 31 H 0.013 0.987 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.157 0.843 37 H 0.161 0.839 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.105 0.895 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.954 -5.531 -6.734 16.451 hybrid contribution -0.453 -0.997 1.499 1.857 sum 13.501 -6.528 -5.235 15.884 Atomic orbital electron populations 1.23804 0.96129 1.01386 1.00327 1.23579 0.96661 0.99808 1.00458 1.21342 0.94605 0.94795 0.93496 1.62333 1.19646 1.37405 1.04587 1.20186 0.92535 0.97634 0.86076 1.20965 1.27652 1.04477 1.01506 0.90156 1.24863 0.95073 0.94908 0.98250 1.69882 1.31829 1.23543 1.28516 0.86901 0.77690 0.81986 0.83410 1.20261 1.21217 1.19252 1.20748 0.93746 0.95081 0.93199 1.20632 0.88302 0.96733 0.97850 1.20667 1.01623 1.08063 0.93016 1.21212 0.93856 0.98220 0.99451 1.20100 0.99322 1.11524 0.87269 1.17161 0.82377 0.78426 0.83735 1.90808 1.65692 1.62555 1.22094 1.47650 1.26157 1.41190 1.20906 1.21631 0.85223 0.97954 1.00219 1.22304 1.00189 1.01713 0.84626 1.43039 1.19239 1.39589 1.11814 0.73475 0.88102 0.89655 0.88404 0.88830 0.91170 0.98729 0.96014 0.92631 0.92235 0.90626 0.84282 0.83898 0.91909 0.90586 0.92019 0.92115 0.89498 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.88 14.32 29.01 0.42 -2.47 16 2 C -0.19 -3.02 7.73 -36.02 -0.28 -3.29 16 3 C 0.09 1.53 5.30 -4.97 -0.03 1.51 16 4 N -0.52 -9.69 4.72 -238.96 -1.13 -10.82 16 5 C 0.16 3.60 3.63 -4.98 -0.02 3.58 16 6 C -0.51 -13.52 9.05 -34.44 -0.31 -13.83 16 7 H 0.08 2.34 6.98 -52.49 -0.37 1.98 16 8 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 9 N -0.90 -26.52 13.96 55.43 0.77 -25.75 16 10 Si 0.87 20.60 27.38 -169.99 -4.65 15.95 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.27 -6.09 6.68 56.52 0.38 -5.72 16 14 C 0.10 1.53 5.26 -4.98 -0.03 1.50 16 15 C 0.08 1.19 5.88 -81.96 -0.48 0.71 16 16 C -0.21 -2.89 9.76 -39.98 -0.39 -3.28 16 17 C -0.10 -1.43 10.67 -39.12 -0.42 -1.85 16 18 C -0.07 -0.99 6.65 -81.98 -0.55 -1.54 16 19 C 0.59 8.51 7.64 -12.85 -0.10 8.42 16 20 O -0.53 -9.18 16.90 5.20 0.09 -9.09 16 21 N -0.62 -6.92 3.27 -191.09 -0.63 -7.54 16 22 C 0.09 0.80 10.16 59.84 0.61 1.41 16 23 C 0.06 0.47 8.87 59.85 0.53 1.00 16 24 N -0.53 -6.90 5.05 -5.70 -0.03 -6.93 16 25 H 0.42 4.59 4.93 -40.82 -0.20 4.39 16 26 H 0.10 1.74 7.84 -52.49 -0.41 1.33 16 27 H 0.09 1.20 8.06 -52.49 -0.42 0.78 16 28 H 0.10 1.43 6.59 -52.49 -0.35 1.09 16 29 H 0.09 1.95 6.01 -51.93 -0.31 1.63 16 30 H 0.07 1.20 6.74 -51.93 -0.35 0.85 16 31 H 0.00 -0.11 6.64 -51.93 -0.34 -0.46 16 32 H 0.02 0.48 7.16 -51.93 -0.37 0.11 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.06 0.87 6.00 -51.93 -0.31 0.56 16 35 H 0.08 1.07 7.98 -51.93 -0.41 0.66 16 36 H 0.14 1.75 8.06 -52.48 -0.42 1.33 16 37 H 0.14 1.91 8.06 -52.49 -0.42 1.48 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.44 7.71 -51.93 -0.40 0.04 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.43 7.70 -51.93 -0.40 0.03 16 42 H 0.09 0.55 7.78 -51.93 -0.40 0.15 16 43 H 0.08 0.83 5.23 -51.93 -0.27 0.56 16 LS Contribution 346.64 15.07 5.22 5.22 Total: -1.00 -31.92 346.64 -7.67 -39.58 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.18 Total: 5.65 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -1.14 Total: -6.28 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -1.01 Total: -51.04 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.65 Total: 15.95 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.92 -7.67 -39.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292710717.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.911 kcal (2) G-P(sol) polarization free energy of solvation -31.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds