Wall clock time and date at job start Tue Mar 31 2020 07:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50705 * 119.99676 * 2 1 4 4 N 1.46903 * 109.47208 * 124.56123 * 3 2 1 5 5 C 1.46902 * 110.99597 * 292.53824 * 4 3 2 6 6 C 1.50696 * 109.47406 * 297.20477 * 5 4 3 7 7 H 1.08001 * 119.99611 * 4.78618 * 6 5 4 8 8 C 1.37878 * 120.00412 * 184.79246 * 6 5 4 9 9 N 1.31510 * 120.00265 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99575 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.46972 * 90.00149 * 10 8 6 12 12 H 1.48498 * 109.46967 * 210.00383 * 10 8 6 13 13 H 1.48494 * 109.47312 * 330.00344 * 10 8 6 14 14 C 1.46905 * 110.99819 * 56.49066 * 4 3 2 15 15 C 1.50696 * 109.46975 * 66.05080 * 14 4 3 16 16 C 1.35452 * 125.56447 * 264.97076 * 15 14 4 17 17 C 1.39828 * 107.86984 * 180.02562 * 16 15 14 18 18 C 1.37879 * 107.08341 * 359.75862 * 17 16 15 19 19 C 1.46672 * 126.23389 * 180.23546 * 18 17 16 20 20 O 1.21690 * 120.00484 * 349.60895 * 19 18 17 21 21 N 1.34783 * 120.00179 * 169.60493 * 19 18 17 22 22 C 1.46496 * 120.00214 * 180.43589 * 21 19 18 23 23 C 1.46501 * 119.99488 * 0.43568 * 21 19 18 24 24 N 1.35530 * 125.56621 * 84.99683 * 15 14 4 25 25 H 0.97002 * 125.67847 * 359.95309 * 24 15 14 26 26 H 1.07990 * 119.99971 * 359.97438 * 1 2 3 27 27 H 1.07994 * 119.99754 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.00688 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47462 * 4.55696 * 3 2 1 30 30 H 1.09005 * 109.46794 * 244.55769 * 3 2 1 31 31 H 1.09002 * 109.46980 * 57.20823 * 5 4 3 32 32 H 1.09003 * 109.46805 * 177.20212 * 5 4 3 33 33 H 0.97001 * 120.00272 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.47109 * 306.04508 * 14 4 3 35 35 H 1.08997 * 109.46665 * 186.04546 * 14 4 3 36 36 H 1.08003 * 126.06164 * 0.04305 * 16 15 14 37 37 H 1.07998 * 126.46349 * 180.02562 * 17 16 15 38 38 H 1.08994 * 109.47470 * 59.99964 * 22 21 19 39 39 H 1.09000 * 109.47106 * 180.02562 * 22 21 19 40 40 H 1.09005 * 109.46946 * 299.99898 * 22 21 19 41 41 H 1.09006 * 109.47117 * 83.20974 * 23 21 19 42 42 H 1.08998 * 109.47030 * 203.20876 * 23 21 19 43 43 H 1.08995 * 109.47599 * 323.20871 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9888 1.3365 1.1406 5 6 2.2551 1.3903 2.4122 6 6 1.4551 2.6657 2.4770 7 1 1.4267 3.3291 1.6253 8 6 0.7595 2.9857 3.6236 9 7 0.0618 4.0990 3.6804 10 14 0.8083 1.8379 5.0966 11 1 1.9433 2.2119 5.9782 12 1 -0.4643 1.9496 5.8535 13 1 0.9849 0.4396 4.6289 14 6 3.9030 0.1870 1.1084 15 6 4.8086 0.2989 -0.0909 16 6 4.5984 -0.2866 -1.2941 17 6 5.6628 0.0602 -2.1319 18 6 6.5067 0.8691 -1.4008 19 6 7.7545 1.4753 -1.8769 20 8 8.2285 1.1337 -2.9444 21 7 8.3764 2.4109 -1.1321 22 6 9.6176 3.0233 -1.6121 23 6 7.8109 2.8154 0.1574 24 7 5.9665 1.0014 -0.1416 25 1 6.3488 1.5153 0.5869 26 1 -0.5399 0.9352 0.0004 27 1 -0.5399 -0.9353 0.0004 28 1 1.8501 -0.9352 -0.0004 29 1 1.3580 2.1320 0.0816 30 1 2.6275 1.3991 -0.9281 31 1 1.5823 0.5354 2.4799 32 1 2.9624 1.3625 3.2411 33 1 -0.4279 4.3240 4.4869 34 1 3.3254 -0.7350 1.0429 35 1 4.5041 0.1755 2.0176 36 1 3.7576 -0.9105 -1.5594 37 1 5.7964 -0.2443 -3.1594 38 1 9.4321 3.5239 -2.5624 39 1 9.9704 3.7505 -0.8808 40 1 10.3742 2.2508 -1.7500 41 1 8.1190 2.1078 0.9272 42 1 8.1698 3.8117 0.4151 43 1 6.7231 2.8274 0.0895 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292710717.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:28 Heat of formation + Delta-G solvation = 44.418119 kcal Electronic energy + Delta-G solvation = -23440.201078 eV Core-core repulsion = 20101.263983 eV Total energy + Delta-G solvation = -3338.937095 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.56066 -40.32565 -38.85521 -36.82261 -34.77458 -33.83951 -32.30062 -31.71356 -29.69899 -28.78539 -27.99674 -26.85463 -25.14015 -22.66066 -22.13063 -21.77096 -21.05263 -19.99455 -18.81774 -18.43347 -17.31016 -17.02795 -16.93383 -16.49612 -16.08885 -15.97784 -15.59366 -14.92913 -14.79046 -14.64748 -14.47236 -14.21689 -14.11618 -13.62552 -13.57937 -13.47352 -13.42715 -13.24267 -12.88817 -12.69323 -12.60082 -12.32063 -12.14303 -12.03892 -11.80378 -11.36454 -11.27561 -10.72828 -10.20613 -10.01680 -9.79974 -9.15992 -8.88966 -8.22670 -6.24980 0.41985 1.37942 1.40191 1.47061 1.50336 1.70929 1.86071 2.21139 2.35574 2.38479 3.11566 3.42457 3.54681 3.92675 3.97944 4.11965 4.17425 4.27480 4.35210 4.39452 4.43371 4.56789 4.59778 4.63234 4.68116 4.75063 4.86143 4.96842 5.04662 5.06996 5.09654 5.22726 5.28835 5.37090 5.57044 5.76630 5.81781 5.88550 5.97664 6.08229 6.17642 6.36681 6.48373 6.67292 6.81321 6.97694 7.38016 8.93721 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018612 B = 0.004084 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.027219 B = 6854.926221 C = 7788.733542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.186 4.186 3 C 0.091 3.909 4 N -0.528 5.528 5 C 0.173 3.827 6 C -0.507 4.507 7 H 0.037 0.963 8 C 0.010 3.990 9 N -0.950 5.950 10 Si 0.942 3.058 11 H -0.265 1.265 12 H -0.289 1.289 13 H -0.248 1.248 14 C 0.105 3.895 15 C 0.075 3.925 16 C -0.206 4.206 17 C -0.118 4.118 18 C -0.074 4.074 19 C 0.584 3.416 20 O -0.573 6.573 21 N -0.620 5.620 22 C 0.087 3.913 23 C 0.049 3.951 24 N -0.523 5.523 25 H 0.428 0.572 26 H 0.078 0.922 27 H 0.113 0.887 28 H 0.125 0.875 29 H 0.053 0.947 30 H 0.079 0.921 31 H -0.005 1.005 32 H 0.032 0.968 33 H 0.264 0.736 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.153 0.847 37 H 0.145 0.855 38 H 0.054 0.946 39 H 0.111 0.889 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.113 0.887 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.764 -7.860 -5.073 17.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.205 4.205 3 C -0.036 4.036 4 N -0.250 5.250 5 C 0.046 3.954 6 C -0.545 4.545 7 H 0.055 0.945 8 C -0.187 4.187 9 N -0.591 5.591 10 Si 0.766 3.234 11 H -0.190 1.190 12 H -0.216 1.216 13 H -0.171 1.171 14 C -0.023 4.023 15 C -0.045 4.045 16 C -0.230 4.230 17 C -0.145 4.145 18 C -0.187 4.187 19 C 0.374 3.626 20 O -0.453 6.453 21 N -0.352 5.352 22 C -0.055 4.055 23 C -0.093 4.093 24 N -0.127 5.127 25 H 0.276 0.724 26 H 0.096 0.904 27 H 0.131 0.869 28 H 0.143 0.857 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.013 0.987 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.170 0.830 37 H 0.163 0.837 38 H 0.073 0.927 39 H 0.129 0.871 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.132 0.868 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.371 -7.336 -5.387 17.864 hybrid contribution -0.841 -0.325 0.983 1.334 sum 14.531 -7.661 -4.404 17.007 Atomic orbital electron populations 1.23917 0.96354 1.01664 1.00096 1.23600 0.96646 0.99693 1.00583 1.21156 0.94144 0.94644 0.93691 1.62181 1.19650 1.40065 1.03147 1.19921 0.92384 0.94918 0.88184 1.21210 1.27850 1.05495 0.99953 0.94469 1.25766 0.94729 0.96528 1.01675 1.70050 1.33502 1.26020 1.29575 0.85798 0.77770 0.80548 0.79327 1.19003 1.21551 1.17113 1.20765 0.93230 0.93954 0.94335 1.20528 0.88709 0.97545 0.97694 1.20841 1.01692 1.07832 0.92678 1.21399 0.94380 0.98777 0.99922 1.20187 0.99391 1.11444 0.87663 1.17315 0.82558 0.79041 0.83643 1.90779 1.66712 1.64107 1.23744 1.47781 1.26344 1.39846 1.21253 1.21829 0.84160 0.98470 1.01043 1.22495 0.99271 1.03814 0.83725 1.43040 1.18827 1.39145 1.11693 0.72407 0.90389 0.86918 0.85699 0.92821 0.90282 0.98714 0.94952 0.92676 0.90870 0.89151 0.82981 0.83682 0.92688 0.87051 0.92277 0.90171 0.86825 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.68 14.32 67.78 0.97 -4.70 16 2 C -0.19 -5.71 7.73 25.64 0.20 -5.51 16 3 C 0.09 3.26 5.30 85.56 0.45 3.72 16 4 N -0.53 -19.06 4.72 -909.92 -4.29 -23.36 16 5 C 0.17 7.43 3.63 85.56 0.31 7.74 16 6 C -0.51 -27.42 9.05 25.60 0.23 -27.19 16 7 H 0.04 2.28 6.98 -2.91 -0.02 2.26 16 8 C 0.01 0.55 5.47 84.66 0.46 1.02 16 9 N -0.95 -57.62 13.96 21.45 0.30 -57.32 16 10 Si 0.94 41.72 27.38 68.60 1.88 43.60 16 11 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 12 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 13 H -0.25 -10.09 6.68 99.48 0.66 -9.42 16 14 C 0.11 2.88 5.26 85.55 0.45 3.33 16 15 C 0.08 1.95 5.88 41.34 0.24 2.19 16 16 C -0.21 -5.30 9.76 22.01 0.21 -5.09 16 17 C -0.12 -3.25 10.67 22.57 0.24 -3.01 16 18 C -0.07 -2.02 6.65 40.35 0.27 -1.75 16 19 C 0.58 16.44 7.64 86.44 0.66 17.10 16 20 O -0.57 -19.83 16.90 -4.32 -0.07 -19.90 16 21 N -0.62 -12.72 3.27 -876.69 -2.87 -15.59 16 22 C 0.09 1.36 10.16 127.77 1.30 2.66 16 23 C 0.05 0.71 8.87 127.77 1.13 1.84 16 24 N -0.52 -12.58 5.05 -171.94 -0.87 -13.45 16 25 H 0.43 8.44 4.93 -92.71 -0.46 7.99 16 26 H 0.08 2.77 7.84 -2.92 -0.02 2.74 16 27 H 0.11 2.88 8.06 -2.91 -0.02 2.85 16 28 H 0.13 3.20 6.59 -2.91 -0.02 3.18 16 29 H 0.05 2.34 6.01 -2.39 -0.01 2.32 16 30 H 0.08 2.66 6.74 -2.38 -0.02 2.64 16 31 H 0.00 -0.21 6.64 -2.39 -0.02 -0.22 16 32 H 0.03 1.34 7.16 -2.39 -0.02 1.32 16 33 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 34 H 0.07 1.84 6.00 -2.39 -0.01 1.83 16 35 H 0.09 2.22 7.98 -2.39 -0.02 2.21 16 36 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 37 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 38 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.11 0.93 7.71 -2.39 -0.02 0.91 16 40 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 41 H 0.08 0.88 7.70 -2.38 -0.02 0.86 16 42 H 0.11 1.05 7.78 -2.39 -0.02 1.03 16 43 H 0.07 1.24 5.23 -2.39 -0.01 1.23 16 Total: -1.00 -70.95 346.64 1.72 -69.23 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.51 Total: 24.45 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 7.14 Total: -7.66 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -7.73 Total: -109.72 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.07 Total: -19.90 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.88 Total: 43.60 kcal Total: -70.95 1.72 -69.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292710717.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.649 kcal (2) G-P(sol) polarization free energy of solvation -70.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds