Wall clock time and date at job start Tue Mar 31 2020 06:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50697 * 120.00085 * 2 1 4 4 N 1.46500 * 109.46830 * 124.99993 * 3 2 1 5 5 C 1.46498 * 120.00103 * 269.99931 * 4 3 2 6 6 C 1.50696 * 109.47448 * 270.00400 * 5 4 3 7 7 H 1.08004 * 119.99900 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00265 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00037 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00297 * 179.97438 * 8 6 5 11 11 H 1.48510 * 109.47034 * 59.99972 * 10 8 6 12 12 H 1.48497 * 109.47539 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47150 * 300.00369 * 10 8 6 14 14 C 1.34773 * 119.99876 * 90.00286 * 4 3 2 15 15 O 1.21604 * 119.99914 * 179.97438 * 14 4 3 16 16 C 1.47433 * 119.99836 * 0.02562 * 14 4 3 17 17 C 1.41288 * 126.41739 * 90.00020 * 16 14 4 18 18 C 1.50706 * 125.98802 * 359.97438 * 17 16 14 19 19 N 1.30439 * 108.02422 * 179.97438 * 17 16 14 20 20 N 1.39933 * 108.89559 * 359.74597 * 19 17 16 21 21 C 1.46504 * 125.75489 * 180.27116 * 20 19 17 22 22 C 1.53005 * 109.46977 * 270.18094 * 21 20 19 23 23 C 1.34253 * 108.49336 * 0.42671 * 20 19 17 24 24 C 1.50703 * 126.29324 * 179.84703 * 23 20 19 25 25 H 1.08004 * 119.99892 * 179.97438 * 1 2 3 26 26 H 1.07997 * 120.00009 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.00009 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.46860 * 5.00457 * 3 2 1 29 29 H 1.08998 * 109.47586 * 245.00284 * 3 2 1 30 30 H 1.09003 * 109.47237 * 30.00187 * 5 4 3 31 31 H 1.08998 * 109.46988 * 150.00250 * 5 4 3 32 32 H 0.97004 * 119.99992 * 179.97438 * 9 8 6 33 33 H 1.09005 * 109.47331 * 89.99912 * 18 17 16 34 34 H 1.08991 * 109.46944 * 210.00275 * 18 17 16 35 35 H 1.09004 * 109.46683 * 330.00261 * 18 17 16 36 36 H 1.08999 * 109.47008 * 30.17816 * 21 20 19 37 37 H 1.08998 * 109.47538 * 150.18089 * 21 20 19 38 38 H 1.08999 * 109.47025 * 299.99712 * 22 21 20 39 39 H 1.09003 * 109.47119 * 60.00145 * 22 21 20 40 40 H 1.09004 * 109.46994 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.47152 * 269.68719 * 24 23 20 42 42 H 1.09001 * 109.46980 * 149.68819 * 24 23 20 43 43 H 1.09004 * 109.47113 * 29.68800 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8648 2.4249 6 6 2.8443 3.3434 2.4805 7 1 3.3040 3.8368 1.6369 8 6 2.5194 4.0663 3.6087 9 7 1.9600 3.4655 4.6362 10 14 2.8738 5.8991 3.6780 11 1 2.1379 6.5871 2.5868 12 1 2.4340 6.4392 4.9895 13 1 4.3317 6.1280 3.5127 14 6 4.2497 0.8661 0.9824 15 8 5.0220 0.8887 1.9214 16 6 4.6875 0.3302 -0.3195 17 6 5.2844 1.0626 -1.3700 18 6 5.5881 2.5387 -1.3595 19 7 5.5266 0.2372 -2.3506 20 7 5.1078 -1.0449 -1.9777 21 6 5.2118 -2.2526 -2.8005 22 6 3.9447 -2.4053 -3.6444 23 6 4.5915 -0.9810 -0.7400 24 6 4.0185 -2.1308 0.0479 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0897 29 1 2.6213 1.4027 -0.9314 30 1 1.4888 1.6965 2.5460 31 1 3.0990 1.3601 3.2259 32 1 1.7318 3.9740 5.4301 33 1 6.5909 2.7005 -0.9641 34 1 5.5310 2.9286 -2.3757 35 1 4.8621 3.0544 -0.7310 36 1 6.0780 -2.1713 -3.4572 37 1 5.3256 -3.1234 -2.1550 38 1 3.0784 -2.4866 -2.9878 39 1 3.8309 -1.5345 -4.2900 40 1 4.0222 -3.3036 -4.2570 41 1 2.9507 -2.2139 -0.1550 42 1 4.1734 -1.9548 1.1124 43 1 4.5168 -3.0553 -0.2438 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293737296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:30 Heat of formation + Delta-G solvation = 55.751870 kcal Electronic energy + Delta-G solvation = -24202.190965 eV Core-core repulsion = 20863.745338 eV Total energy + Delta-G solvation = -3338.445627 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.32157 -38.52496 -35.51052 -34.94773 -33.19566 -32.31822 -31.97863 -30.74221 -28.24437 -27.32992 -26.86078 -25.33466 -23.80022 -22.71068 -20.85360 -19.79901 -19.24860 -18.33020 -16.82196 -16.43087 -16.05031 -15.61064 -15.05319 -14.64925 -14.40907 -14.19029 -14.15440 -13.59576 -13.32788 -13.20508 -13.05484 -12.70572 -12.56398 -12.37356 -12.26273 -12.06441 -11.85663 -11.72209 -11.54823 -11.45577 -11.22071 -10.94810 -10.82161 -10.54790 -10.48322 -10.14846 -9.59969 -9.14649 -8.99669 -8.95801 -8.38737 -8.16336 -7.60285 -5.98965 -4.03307 1.86643 2.43530 2.50478 2.75966 3.35752 3.40094 3.40997 3.47397 4.16858 4.40662 4.51331 4.59912 4.73201 4.84238 4.93188 5.01915 5.17276 5.27487 5.33798 5.35623 5.42551 5.51381 5.52973 5.59147 5.75653 5.83274 5.87160 5.87764 6.02776 6.08164 6.13922 6.21086 6.30611 6.74770 6.83655 6.97376 7.04888 7.18228 7.50824 7.63601 7.83767 7.98044 8.29391 8.50607 8.96069 9.19792 9.61666 11.09090 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019633 B = 0.004972 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.845528 B = 5629.807763 C = 6220.938389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.166 4.166 3 C 0.142 3.858 4 N -0.585 5.585 5 C 0.248 3.752 6 C -0.524 4.524 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.895 5.895 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.276 1.276 14 C 0.586 3.414 15 O -0.536 6.536 16 C -0.260 4.260 17 C 0.111 3.889 18 C -0.077 4.077 19 N -0.303 5.303 20 N -0.364 5.364 21 C 0.128 3.872 22 C -0.170 4.170 23 C 0.115 3.885 24 C -0.098 4.098 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.032 0.968 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.829 -12.251 -15.797 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.185 4.185 3 C 0.018 3.982 4 N -0.315 5.315 5 C 0.129 3.871 6 C -0.563 4.563 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.534 5.534 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.201 1.201 14 C 0.371 3.629 15 O -0.413 6.413 16 C -0.275 4.275 17 C -0.056 4.056 18 C -0.136 4.136 19 N -0.124 5.124 20 N -0.145 5.145 21 C 0.007 3.993 22 C -0.228 4.228 23 C -0.015 4.015 24 C -0.156 4.156 25 H 0.111 0.889 26 H 0.117 0.883 27 H 0.122 0.878 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.649 -12.431 -16.340 20.597 hybrid contribution -0.229 0.957 0.829 1.287 sum 1.420 -11.473 -15.511 19.346 Atomic orbital electron populations 1.23790 0.95806 1.01636 1.01308 1.23589 0.96293 0.99384 0.99256 1.20480 0.92766 0.94920 0.90064 1.48173 1.10201 1.59737 1.13379 1.19278 0.95359 0.93780 0.78728 1.21402 1.40406 0.93316 1.01209 0.92437 1.24915 0.95101 0.98637 0.95350 1.69926 1.42146 1.36205 1.05161 0.86590 0.78866 0.85053 0.77098 1.20265 1.21262 1.20139 1.17258 0.82045 0.77822 0.85806 1.90752 1.52882 1.56411 1.41275 1.20167 1.15509 0.92937 0.98902 1.22297 0.96384 0.96726 0.90155 1.20264 1.03318 0.86924 1.03079 1.77018 1.24475 0.87818 1.23126 1.48217 1.47285 1.07425 1.11576 1.21645 1.00240 0.83325 0.94085 1.22184 0.97212 1.02994 1.00369 1.21184 0.97680 0.95914 0.86681 1.20630 1.00823 0.93656 1.00502 0.88948 0.88331 0.87781 0.89722 0.90906 0.94959 0.93899 0.92742 0.90170 0.90836 0.89754 0.88743 0.89062 0.91886 0.91505 0.90634 0.89733 0.89101 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.51 14.32 29.01 0.42 -2.09 16 2 C -0.17 -2.48 9.85 -36.03 -0.35 -2.84 16 3 C 0.14 2.49 5.67 -5.19 -0.03 2.46 16 4 N -0.58 -12.73 2.44 -177.71 -0.43 -13.16 16 5 C 0.25 6.51 5.16 -5.20 -0.03 6.49 16 6 C -0.52 -14.85 9.39 -34.44 -0.32 -15.17 16 7 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.90 -26.63 13.29 55.43 0.74 -25.90 16 10 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.59 12.96 6.83 -12.52 -0.09 12.88 16 15 O -0.54 -14.28 16.69 5.27 0.09 -14.19 16 16 C -0.26 -4.75 4.10 -105.07 -0.43 -5.18 16 17 C 0.11 1.90 6.96 -82.02 -0.57 1.33 16 18 C -0.08 -1.18 10.28 36.01 0.37 -0.81 16 19 N -0.30 -4.83 12.50 33.89 0.42 -4.41 16 20 N -0.36 -4.92 3.58 -56.60 -0.20 -5.12 16 21 C 0.13 1.12 6.93 -4.04 -0.03 1.09 16 22 C -0.17 -1.24 10.24 37.16 0.38 -0.86 16 23 C 0.11 1.70 6.92 -81.60 -0.57 1.14 16 24 C -0.10 -1.14 9.41 36.01 0.34 -0.80 16 25 H 0.09 1.04 8.06 -52.48 -0.42 0.62 16 26 H 0.10 1.31 7.84 -52.49 -0.41 0.90 16 27 H 0.10 1.44 4.95 -52.49 -0.26 1.18 16 28 H 0.08 1.52 7.72 -51.93 -0.40 1.12 16 29 H 0.07 1.22 6.64 -51.93 -0.34 0.87 16 30 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 31 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 1.41 8.01 -51.93 -0.42 0.99 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.59 7.01 -51.93 -0.36 0.23 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.86 5.86 -51.93 -0.30 0.56 16 42 H 0.09 1.23 7.96 -51.93 -0.41 0.82 16 43 H 0.07 0.62 7.04 -51.93 -0.37 0.25 16 LS Contribution 362.42 15.07 5.46 5.46 Total: -1.00 -34.70 362.42 -6.54 -41.24 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -6.59 Total: -0.09 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -1.01 Total: -0.70 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.52 Total: -48.58 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.09 Total: -14.19 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.70 -6.54 -41.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293737296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.994 kcal (2) G-P(sol) polarization free energy of solvation -34.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds