Wall clock time and date at job start Tue Mar 31 2020 06:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50697 * 120.00085 * 2 1 4 4 N 1.46500 * 109.46830 * 124.99993 * 3 2 1 5 5 C 1.46498 * 120.00103 * 269.99931 * 4 3 2 6 6 C 1.50696 * 109.47448 * 270.00400 * 5 4 3 7 7 H 1.08004 * 119.99900 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00265 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00037 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00297 * 179.97438 * 8 6 5 11 11 H 1.48510 * 109.47034 * 59.99972 * 10 8 6 12 12 H 1.48497 * 109.47539 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47150 * 300.00369 * 10 8 6 14 14 C 1.34773 * 119.99876 * 90.00286 * 4 3 2 15 15 O 1.21604 * 119.99914 * 179.97438 * 14 4 3 16 16 C 1.47433 * 119.99836 * 0.02562 * 14 4 3 17 17 C 1.41288 * 126.41739 * 90.00020 * 16 14 4 18 18 C 1.50706 * 125.98802 * 359.97438 * 17 16 14 19 19 N 1.30439 * 108.02422 * 179.97438 * 17 16 14 20 20 N 1.39933 * 108.89559 * 359.74597 * 19 17 16 21 21 C 1.46504 * 125.75489 * 180.27116 * 20 19 17 22 22 C 1.53005 * 109.46977 * 270.18094 * 21 20 19 23 23 C 1.34253 * 108.49336 * 0.42671 * 20 19 17 24 24 C 1.50703 * 126.29324 * 179.84703 * 23 20 19 25 25 H 1.08004 * 119.99892 * 179.97438 * 1 2 3 26 26 H 1.07997 * 120.00009 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.00009 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.46860 * 5.00457 * 3 2 1 29 29 H 1.08998 * 109.47586 * 245.00284 * 3 2 1 30 30 H 1.09003 * 109.47237 * 30.00187 * 5 4 3 31 31 H 1.08998 * 109.46988 * 150.00250 * 5 4 3 32 32 H 0.97004 * 119.99992 * 179.97438 * 9 8 6 33 33 H 1.09005 * 109.47331 * 89.99912 * 18 17 16 34 34 H 1.08991 * 109.46944 * 210.00275 * 18 17 16 35 35 H 1.09004 * 109.46683 * 330.00261 * 18 17 16 36 36 H 1.08999 * 109.47008 * 30.17816 * 21 20 19 37 37 H 1.08998 * 109.47538 * 150.18089 * 21 20 19 38 38 H 1.08999 * 109.47025 * 299.99712 * 22 21 20 39 39 H 1.09003 * 109.47119 * 60.00145 * 22 21 20 40 40 H 1.09004 * 109.46994 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.47152 * 269.68719 * 24 23 20 42 42 H 1.09001 * 109.46980 * 149.68819 * 24 23 20 43 43 H 1.09004 * 109.47113 * 29.68800 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8648 2.4249 6 6 2.8443 3.3434 2.4805 7 1 3.3040 3.8368 1.6369 8 6 2.5194 4.0663 3.6087 9 7 1.9600 3.4655 4.6362 10 14 2.8738 5.8991 3.6780 11 1 2.1379 6.5871 2.5868 12 1 2.4340 6.4392 4.9895 13 1 4.3317 6.1280 3.5127 14 6 4.2497 0.8661 0.9824 15 8 5.0220 0.8887 1.9214 16 6 4.6875 0.3302 -0.3195 17 6 5.2844 1.0626 -1.3700 18 6 5.5881 2.5387 -1.3595 19 7 5.5266 0.2372 -2.3506 20 7 5.1078 -1.0449 -1.9777 21 6 5.2118 -2.2526 -2.8005 22 6 3.9447 -2.4053 -3.6444 23 6 4.5915 -0.9810 -0.7400 24 6 4.0185 -2.1308 0.0479 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0897 29 1 2.6213 1.4027 -0.9314 30 1 1.4888 1.6965 2.5460 31 1 3.0990 1.3601 3.2259 32 1 1.7318 3.9740 5.4301 33 1 6.5909 2.7005 -0.9641 34 1 5.5310 2.9286 -2.3757 35 1 4.8621 3.0544 -0.7310 36 1 6.0780 -2.1713 -3.4572 37 1 5.3256 -3.1234 -2.1550 38 1 3.0784 -2.4866 -2.9878 39 1 3.8309 -1.5345 -4.2900 40 1 4.0222 -3.3036 -4.2570 41 1 2.9507 -2.2139 -0.1550 42 1 4.1734 -1.9548 1.1124 43 1 4.5168 -3.0553 -0.2438 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293737296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:29 Heat of formation + Delta-G solvation = 33.773617 kcal Electronic energy + Delta-G solvation = -24203.144014 eV Core-core repulsion = 20863.745338 eV Total energy + Delta-G solvation = -3339.398676 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.54081 -40.22913 -37.15831 -35.92791 -35.11211 -33.66429 -33.37678 -31.83034 -29.93281 -28.59673 -28.11958 -26.87538 -25.34666 -23.99948 -22.27738 -21.02291 -20.36446 -19.81772 -18.61758 -18.11716 -17.55029 -17.01799 -16.41775 -16.13129 -15.87423 -15.63069 -15.25266 -14.75070 -14.51487 -14.36108 -14.26335 -14.16828 -13.91964 -13.84243 -13.44882 -13.30920 -13.09483 -12.97499 -12.90788 -12.84903 -12.69313 -12.55951 -12.20300 -12.18026 -12.08378 -11.73627 -11.65039 -10.74602 -10.60917 -10.34130 -10.12391 -9.48283 -9.42226 -8.18976 -6.33109 0.70465 1.29375 1.38758 1.43147 1.44745 1.46014 1.50218 1.76333 2.38686 2.60387 3.10819 3.42355 3.55121 3.87460 3.97161 4.04436 4.11098 4.14031 4.21121 4.32724 4.37300 4.42634 4.60139 4.65048 4.72812 4.74699 4.80664 4.85341 4.92597 4.95965 5.03619 5.08470 5.11161 5.25709 5.26267 5.50624 5.55486 5.69264 5.78947 5.97632 6.02460 6.09981 6.62267 6.72186 6.78525 7.30602 7.49254 8.88174 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019633 B = 0.004972 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.845528 B = 5629.807763 C = 6220.938389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.187 4.187 3 C 0.144 3.856 4 N -0.585 5.585 5 C 0.266 3.734 6 C -0.543 4.543 7 H 0.053 0.947 8 C 0.011 3.989 9 N -0.927 5.927 10 Si 0.964 3.036 11 H -0.260 1.260 12 H -0.278 1.278 13 H -0.278 1.278 14 C 0.590 3.410 15 O -0.596 6.596 16 C -0.300 4.300 17 C 0.098 3.902 18 C -0.075 4.075 19 N -0.311 5.311 20 N -0.351 5.351 21 C 0.114 3.886 22 C -0.163 4.163 23 C 0.133 3.867 24 C -0.098 4.098 25 H 0.123 0.877 26 H 0.097 0.903 27 H 0.118 0.882 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.024 0.976 31 H -0.001 1.001 32 H 0.267 0.733 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.122 0.878 38 H 0.061 0.939 39 H 0.048 0.952 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.066 0.934 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.204 -13.691 -18.098 22.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.206 4.206 3 C 0.021 3.979 4 N -0.313 5.313 5 C 0.145 3.855 6 C -0.581 4.581 7 H 0.071 0.929 8 C -0.188 4.188 9 N -0.567 5.567 10 Si 0.789 3.211 11 H -0.185 1.185 12 H -0.203 1.203 13 H -0.203 1.203 14 C 0.378 3.622 15 O -0.477 6.477 16 C -0.314 4.314 17 C -0.068 4.068 18 C -0.134 4.134 19 N -0.133 5.133 20 N -0.132 5.132 21 C -0.005 4.005 22 C -0.221 4.221 23 C 0.001 3.999 24 C -0.156 4.156 25 H 0.141 0.859 26 H 0.115 0.885 27 H 0.135 0.865 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.042 0.958 31 H 0.017 0.983 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.080 0.920 36 H 0.123 0.877 37 H 0.140 0.860 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.085 0.915 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.999 -13.888 -18.718 23.329 hybrid contribution -0.077 1.276 1.483 1.958 sum 0.921 -12.612 -17.235 21.376 Atomic orbital electron populations 1.24054 0.95231 1.03026 0.98148 1.23449 0.96831 0.98286 1.02043 1.20596 0.92070 0.96548 0.88662 1.48125 1.11192 1.59105 1.12927 1.18734 0.93956 0.92815 0.80038 1.21665 1.40639 0.94353 1.01456 0.92865 1.25805 0.94621 1.03582 0.94796 1.70044 1.42788 1.38121 1.05713 0.85518 0.78545 0.79195 0.77875 1.18486 1.20311 1.20313 1.17766 0.81220 0.76607 0.86640 1.90698 1.54392 1.58886 1.43743 1.19861 1.18962 0.94960 0.97665 1.22437 0.96770 0.97446 0.90150 1.20244 1.02552 0.86465 1.04098 1.76961 1.24769 0.88828 1.22761 1.48649 1.45269 1.07855 1.11385 1.22210 1.01522 0.82127 0.94610 1.22152 0.96224 1.03620 1.00096 1.21509 0.95984 0.95402 0.87022 1.20770 1.02332 0.93995 0.98517 0.85930 0.88514 0.86475 0.90630 0.90103 0.95795 0.98302 0.92426 0.90144 0.88353 0.91953 0.87750 0.85969 0.91966 0.93313 0.87571 0.87752 0.91515 0.86882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 14.32 67.77 0.97 -3.13 16 2 C -0.19 -5.39 9.85 25.64 0.25 -5.14 16 3 C 0.14 5.14 5.67 85.63 0.49 5.62 16 4 N -0.58 -26.67 2.44 -834.40 -2.04 -28.70 16 5 C 0.27 14.77 5.16 85.63 0.44 15.21 16 6 C -0.54 -31.95 9.39 25.60 0.24 -31.71 16 7 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 8 C 0.01 0.64 5.46 84.65 0.46 1.11 16 9 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 10 Si 0.96 45.50 29.54 68.60 2.03 47.52 16 11 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 13 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 14 C 0.59 27.45 6.83 86.67 0.59 28.04 16 15 O -0.60 -33.88 16.69 -4.04 -0.07 -33.95 16 16 C -0.30 -11.09 4.10 -20.15 -0.08 -11.17 16 17 C 0.10 3.37 6.96 43.52 0.30 3.67 16 18 C -0.07 -2.35 10.28 71.24 0.73 -1.62 16 19 N -0.31 -9.56 12.50 -46.68 -0.58 -10.14 16 20 N -0.35 -8.68 3.58 -332.99 -1.19 -9.87 16 21 C 0.11 1.55 6.93 86.38 0.60 2.15 16 22 C -0.16 -1.77 10.24 71.98 0.74 -1.04 16 23 C 0.13 3.75 6.92 42.14 0.29 4.05 16 24 C -0.10 -2.05 9.41 71.24 0.67 -1.38 16 25 H 0.12 2.31 8.06 -2.91 -0.02 2.28 16 26 H 0.10 2.42 7.84 -2.91 -0.02 2.39 16 27 H 0.12 3.03 4.95 -2.91 -0.01 3.02 16 28 H 0.08 2.78 7.72 -2.39 -0.02 2.77 16 29 H 0.08 2.74 6.64 -2.39 -0.02 2.72 16 30 H 0.02 1.35 8.07 -2.39 -0.02 1.33 16 31 H 0.00 -0.07 7.42 -2.39 -0.02 -0.09 16 32 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 33 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 34 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.06 2.19 8.01 -2.39 -0.02 2.17 16 36 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.12 0.96 7.01 -2.39 -0.02 0.94 16 38 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.10 1.79 5.86 -2.39 -0.01 1.78 16 42 H 0.07 1.78 7.96 -2.39 -0.02 1.76 16 43 H 0.11 1.44 7.04 -2.38 -0.02 1.42 16 Total: -1.00 -79.86 362.42 6.12 -73.74 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.99 Total: 13.04 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 6.69 Total: 4.67 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -3.53 Total: -105.02 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -0.07 Total: -33.95 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -79.86 6.12 -73.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293737296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.510 kcal (2) G-P(sol) polarization free energy of solvation -79.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds