Wall clock time and date at job start Tue Mar 31 2020 06:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46992 * 2 1 4 4 C 1.30350 * 119.99615 * 116.87588 * 3 2 1 5 5 N 1.37479 * 119.99779 * 5.84417 * 4 3 2 6 6 C 1.46503 * 119.99740 * 185.55236 * 5 4 3 7 7 C 1.53001 * 109.47149 * 175.01170 * 6 5 4 8 8 N 1.37471 * 119.99644 * 185.84336 * 4 3 2 9 9 C 1.46501 * 120.00716 * 0.02562 * 8 4 3 10 10 C 1.50692 * 109.47816 * 179.97438 * 9 8 4 11 11 C 1.38330 * 119.96652 * 269.72627 * 10 9 8 12 12 C 1.38273 * 120.13817 * 179.76214 * 11 10 9 13 13 C 1.38121 * 120.06831 * 0.51054 * 12 11 10 14 14 C 1.38855 * 119.93331 * 359.74030 * 13 12 11 15 15 O 1.35750 * 120.06967 * 179.97438 * 14 13 12 16 16 C 1.34831 * 117.00268 * 5.92239 * 15 14 13 17 17 H 1.08001 * 119.99713 * 5.44094 * 16 15 14 18 18 C 1.38646 * 120.00417 * 185.44331 * 16 15 14 19 19 N 1.31560 * 119.99968 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00339 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46884 * 90.00223 * 20 18 16 22 22 H 1.48498 * 109.47491 * 210.00427 * 20 18 16 23 23 H 1.48503 * 109.47161 * 330.00546 * 20 18 16 24 24 C 1.38078 * 119.96775 * 89.99321 * 10 9 8 25 25 H 1.09000 * 109.47438 * 59.99714 * 1 2 3 26 26 H 1.09002 * 109.47307 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47220 * 299.99390 * 1 2 3 28 28 H 1.09001 * 109.46700 * 240.00607 * 2 1 3 29 29 H 1.08995 * 109.47038 * 120.00511 * 2 1 3 30 30 H 0.97003 * 120.00743 * 5.55901 * 5 4 3 31 31 H 1.08995 * 109.46963 * 55.00920 * 6 5 4 32 32 H 1.08998 * 109.46926 * 295.00979 * 6 5 4 33 33 H 1.09004 * 109.47188 * 59.99965 * 7 6 5 34 34 H 1.09002 * 109.47343 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.46837 * 300.00461 * 7 6 5 36 36 H 0.97005 * 119.99716 * 179.97438 * 8 4 3 37 37 H 1.08999 * 109.46916 * 300.00302 * 9 8 4 38 38 H 1.08998 * 109.47014 * 59.99535 * 9 8 4 39 39 H 1.07996 * 119.92602 * 359.97438 * 11 10 9 40 40 H 1.08004 * 119.96790 * 180.25060 * 12 11 10 41 41 H 1.08008 * 120.03409 * 179.72041 * 13 12 11 42 42 H 0.97001 * 120.00050 * 179.97438 * 19 18 16 43 43 H 1.07997 * 120.03400 * 359.96749 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.7167 1.8255 1.0070 5 7 3.0974 0.9674 2.0113 6 6 3.7759 1.4875 3.2011 7 6 3.9764 0.3547 4.2099 8 7 3.0725 3.1522 1.0645 9 6 2.6664 4.0667 -0.0055 10 6 3.1786 5.4515 0.2958 11 6 2.3993 6.3335 1.0226 12 6 2.8679 7.6034 1.3053 13 6 4.1118 7.9986 0.8534 14 6 4.8943 7.1173 0.1191 15 8 6.1171 7.5030 -0.3269 16 6 6.5650 8.7080 0.0797 17 1 5.9983 9.2799 0.7997 18 6 7.7528 9.2131 -0.4264 19 7 8.4428 8.5168 -1.3039 20 14 8.3729 10.8829 0.1363 21 1 9.2422 10.7121 1.3281 22 1 9.1517 11.5163 -0.9579 23 1 7.2175 11.7477 0.4863 24 6 4.4231 5.8406 -0.1587 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 2.9168 0.0176 1.9323 31 1 3.1685 2.2722 3.6518 32 1 4.7454 1.8965 2.9167 33 1 4.5839 -0.4301 3.7591 34 1 4.4808 0.7417 5.0953 35 1 3.0069 -0.0544 4.4941 36 1 3.5919 3.4829 1.8141 37 1 3.0810 3.7238 -0.9534 38 1 1.5786 4.0885 -0.0715 39 1 1.4244 6.0285 1.3729 40 1 2.2588 8.2884 1.8765 41 1 4.4753 8.9921 1.0706 42 1 9.2737 8.8703 -1.6583 43 1 5.0295 5.1529 -0.7293 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304012438.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:39 Heat of formation + Delta-G solvation = 27.283065 kcal Electronic energy + Delta-G solvation = -22420.775068 eV Core-core repulsion = 19081.094941 eV Total energy + Delta-G solvation = -3339.680127 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.31594 -38.75971 -36.78806 -34.77391 -34.44630 -32.31910 -31.39218 -29.99155 -29.00528 -28.73172 -25.78147 -24.96068 -23.18360 -22.72097 -21.66352 -20.85228 -19.35026 -18.14053 -17.37920 -16.74625 -16.59651 -15.48512 -15.14097 -14.75707 -14.50005 -14.44444 -14.28121 -14.18295 -13.73589 -13.55464 -13.16462 -12.83377 -12.68799 -12.37635 -12.30184 -12.14442 -12.03402 -11.80569 -11.67662 -11.34674 -11.29171 -10.90049 -10.87038 -10.74603 -10.61736 -10.44785 -9.40831 -8.93920 -8.86500 -8.67904 -8.19854 -7.61369 -7.28881 -6.47160 -4.06577 1.94792 2.31469 3.04886 3.05891 3.11839 3.12549 3.16780 3.87673 3.94391 4.55315 4.71454 4.81266 4.94412 5.03742 5.06643 5.11770 5.28015 5.37450 5.48430 5.52526 5.60636 5.63295 5.63607 5.72109 5.83124 5.89664 5.93802 6.06593 6.10018 6.14692 6.26733 6.30490 6.61478 6.68199 6.87095 7.01916 7.05185 7.25727 7.28868 7.32110 7.39564 7.75781 7.97050 7.99478 8.78722 8.98295 9.68045 10.70753 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020523 B = 0.003000 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.020506 B = 9330.014074 C = 9688.016719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.077 3.923 3 N -0.671 5.671 4 C 0.626 3.374 5 N -0.772 5.772 6 C 0.108 3.892 7 C -0.161 4.161 8 N -0.716 5.716 9 C 0.197 3.803 10 C -0.073 4.073 11 C -0.194 4.194 12 C -0.078 4.078 13 C -0.226 4.226 14 C 0.149 3.851 15 O -0.177 6.177 16 C -0.392 4.392 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.862 5.862 20 Si 0.941 3.059 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.268 1.268 24 C -0.170 4.170 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.020 0.980 30 H 0.406 0.594 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.403 0.597 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.127 0.873 42 H 0.270 0.730 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.538 -12.886 8.982 18.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.054 4.054 3 N -0.416 5.416 4 C 0.263 3.737 5 N -0.423 5.423 6 C -0.018 4.018 7 C -0.219 4.219 8 N -0.358 5.358 9 C 0.074 3.926 10 C -0.074 4.074 11 C -0.213 4.213 12 C -0.096 4.096 13 C -0.246 4.246 14 C 0.096 3.904 15 O -0.081 6.081 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.496 5.496 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.202 1.202 23 H -0.192 1.192 24 C -0.190 4.190 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.038 0.962 30 H 0.245 0.755 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.239 0.761 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.144 0.856 42 H 0.080 0.920 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.492 -12.561 7.848 18.151 hybrid contribution 0.708 0.191 1.288 1.482 sum -9.785 -12.370 9.136 18.227 Atomic orbital electron populations 1.21772 0.95896 1.00312 1.02063 1.21418 0.94959 0.90309 0.98759 1.72671 1.29323 1.16009 1.23601 1.19025 0.87911 0.83451 0.83347 1.45447 1.66998 1.09832 1.19993 1.21316 0.97113 0.97241 0.86107 1.21935 1.02281 0.98555 0.99130 1.44101 1.60729 1.03821 1.27181 1.19914 0.99088 0.84120 0.89508 1.19394 0.94167 0.94708 0.99086 1.20494 1.00260 0.94889 1.05669 1.20745 0.95106 0.95574 0.98196 1.21235 0.96211 1.01216 1.05932 1.19352 0.86125 0.92720 0.92215 1.83999 1.25820 1.35539 1.62725 1.21302 1.06549 0.94078 1.24905 0.89128 1.25287 0.95661 0.99581 0.95969 1.70040 1.14686 1.37466 1.27440 0.85720 0.79131 0.80232 0.78390 1.19891 1.20237 1.19202 1.20109 0.96777 0.95053 1.07036 0.92178 0.93220 0.93494 0.92112 0.96214 0.75479 0.91975 0.92132 0.92109 0.90871 0.92173 0.76131 0.91201 0.91311 0.87551 0.87401 0.85555 0.91987 0.86432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 10.24 37.16 0.38 -1.14 16 2 C 0.08 0.92 7.03 -4.04 -0.03 0.89 16 3 N -0.67 -9.81 9.77 -61.78 -0.60 -10.41 16 4 C 0.63 8.40 8.36 -320.10 -2.67 5.73 16 5 N -0.77 -8.00 5.50 -61.79 -0.34 -8.34 16 6 C 0.11 0.92 5.78 -4.04 -0.02 0.90 16 7 C -0.16 -1.02 10.03 37.16 0.37 -0.65 16 8 N -0.72 -9.80 5.56 -62.98 -0.35 -10.15 16 9 C 0.20 2.98 5.79 -5.20 -0.03 2.95 16 10 C -0.07 -1.25 5.25 -104.65 -0.55 -1.80 16 11 C -0.19 -3.22 9.70 -39.53 -0.38 -3.60 16 12 C -0.08 -1.38 10.04 -39.61 -0.40 -1.78 16 13 C -0.23 -4.78 9.13 -39.40 -0.36 -5.14 16 14 C 0.15 3.52 6.65 -39.11 -0.26 3.26 16 15 O -0.18 -4.98 9.76 0.04 0.00 -4.98 16 16 C -0.39 -10.79 9.44 30.88 0.29 -10.50 16 17 H 0.09 2.30 5.30 -52.49 -0.28 2.02 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -25.09 13.67 55.48 0.76 -24.33 16 20 Si 0.94 20.27 29.55 -169.99 -5.02 15.24 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 22 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 C -0.17 -3.49 9.65 -39.40 -0.38 -3.87 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.02 0.20 5.39 -51.93 -0.28 -0.08 16 30 H 0.41 3.75 5.89 -40.82 -0.24 3.51 16 31 H 0.06 0.54 8.00 -51.93 -0.42 0.12 16 32 H 0.06 0.55 8.02 -51.93 -0.42 0.14 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.40 5.19 7.02 -40.82 -0.29 4.90 16 37 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 38 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 39 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 41 H 0.13 2.68 5.72 -52.48 -0.30 2.38 16 42 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 358.68 15.07 5.41 5.41 Total: -1.00 -30.54 358.68 -10.71 -41.25 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -6.42 Total: 10.08 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -4.14 Total: -13.77 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.54 Total: -53.23 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: 0.00 Total: -4.98 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.54 -10.71 -41.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304012438.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.530 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds