Wall clock time and date at job start Tue Mar 31 2020 06:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46992 * 2 1 4 4 C 1.30350 * 119.99615 * 116.87588 * 3 2 1 5 5 N 1.37479 * 119.99779 * 5.84417 * 4 3 2 6 6 C 1.46503 * 119.99740 * 185.55236 * 5 4 3 7 7 C 1.53001 * 109.47149 * 175.01170 * 6 5 4 8 8 N 1.37471 * 119.99644 * 185.84336 * 4 3 2 9 9 C 1.46501 * 120.00716 * 0.02562 * 8 4 3 10 10 C 1.50692 * 109.47816 * 179.97438 * 9 8 4 11 11 C 1.38330 * 119.96652 * 269.72627 * 10 9 8 12 12 C 1.38273 * 120.13817 * 179.76214 * 11 10 9 13 13 C 1.38121 * 120.06831 * 0.51054 * 12 11 10 14 14 C 1.38855 * 119.93331 * 359.74030 * 13 12 11 15 15 O 1.35750 * 120.06967 * 179.97438 * 14 13 12 16 16 C 1.34831 * 117.00268 * 5.92239 * 15 14 13 17 17 H 1.08001 * 119.99713 * 5.44094 * 16 15 14 18 18 C 1.38646 * 120.00417 * 185.44331 * 16 15 14 19 19 N 1.31560 * 119.99968 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00339 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46884 * 90.00223 * 20 18 16 22 22 H 1.48498 * 109.47491 * 210.00427 * 20 18 16 23 23 H 1.48503 * 109.47161 * 330.00546 * 20 18 16 24 24 C 1.38078 * 119.96775 * 89.99321 * 10 9 8 25 25 H 1.09000 * 109.47438 * 59.99714 * 1 2 3 26 26 H 1.09002 * 109.47307 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47220 * 299.99390 * 1 2 3 28 28 H 1.09001 * 109.46700 * 240.00607 * 2 1 3 29 29 H 1.08995 * 109.47038 * 120.00511 * 2 1 3 30 30 H 0.97003 * 120.00743 * 5.55901 * 5 4 3 31 31 H 1.08995 * 109.46963 * 55.00920 * 6 5 4 32 32 H 1.08998 * 109.46926 * 295.00979 * 6 5 4 33 33 H 1.09004 * 109.47188 * 59.99965 * 7 6 5 34 34 H 1.09002 * 109.47343 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.46837 * 300.00461 * 7 6 5 36 36 H 0.97005 * 119.99716 * 179.97438 * 8 4 3 37 37 H 1.08999 * 109.46916 * 300.00302 * 9 8 4 38 38 H 1.08998 * 109.47014 * 59.99535 * 9 8 4 39 39 H 1.07996 * 119.92602 * 359.97438 * 11 10 9 40 40 H 1.08004 * 119.96790 * 180.25060 * 12 11 10 41 41 H 1.08008 * 120.03409 * 179.72041 * 13 12 11 42 42 H 0.97001 * 120.00050 * 179.97438 * 19 18 16 43 43 H 1.07997 * 120.03400 * 359.96749 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.7167 1.8255 1.0070 5 7 3.0974 0.9674 2.0113 6 6 3.7759 1.4875 3.2011 7 6 3.9764 0.3547 4.2099 8 7 3.0725 3.1522 1.0645 9 6 2.6664 4.0667 -0.0055 10 6 3.1786 5.4515 0.2958 11 6 2.3993 6.3335 1.0226 12 6 2.8679 7.6034 1.3053 13 6 4.1118 7.9986 0.8534 14 6 4.8943 7.1173 0.1191 15 8 6.1171 7.5030 -0.3269 16 6 6.5650 8.7080 0.0797 17 1 5.9983 9.2799 0.7997 18 6 7.7528 9.2131 -0.4264 19 7 8.4428 8.5168 -1.3039 20 14 8.3729 10.8829 0.1363 21 1 9.2422 10.7121 1.3281 22 1 9.1517 11.5163 -0.9579 23 1 7.2175 11.7477 0.4863 24 6 4.4231 5.8406 -0.1587 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 2.9168 0.0176 1.9323 31 1 3.1685 2.2722 3.6518 32 1 4.7454 1.8965 2.9167 33 1 4.5839 -0.4301 3.7591 34 1 4.4808 0.7417 5.0953 35 1 3.0069 -0.0544 4.4941 36 1 3.5919 3.4829 1.8141 37 1 3.0810 3.7238 -0.9534 38 1 1.5786 4.0885 -0.0715 39 1 1.4244 6.0285 1.3729 40 1 2.2588 8.2884 1.8765 41 1 4.4753 8.9921 1.0706 42 1 9.2737 8.8703 -1.6583 43 1 5.0295 5.1529 -0.7293 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304012438.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:38 Heat of formation + Delta-G solvation = 9.334358 kcal Electronic energy + Delta-G solvation = -22421.553383 eV Core-core repulsion = 19081.094941 eV Total energy + Delta-G solvation = -3340.458441 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.86958 -39.91230 -38.41942 -35.80890 -35.44076 -34.27645 -32.54561 -31.21130 -30.53558 -29.59454 -27.50561 -26.55636 -24.00587 -23.52360 -23.22970 -22.46522 -20.38106 -19.68137 -18.99438 -18.23076 -17.47145 -16.76813 -16.53771 -16.12261 -16.08787 -15.67488 -15.41777 -15.27078 -15.17640 -14.98403 -14.42318 -14.21726 -13.85084 -13.62765 -13.39797 -13.36729 -12.99157 -12.86841 -12.78583 -12.59698 -12.48785 -12.28459 -12.26064 -12.15492 -12.09876 -11.75881 -11.21497 -10.80019 -9.95167 -9.71426 -9.65316 -9.01088 -8.64304 -8.46169 -6.14661 0.41613 0.73151 1.36026 1.45033 1.53468 2.03350 2.05143 2.18428 2.79754 2.98077 3.21812 3.42300 3.89361 4.08490 4.10121 4.13171 4.22119 4.35312 4.37814 4.49797 4.54381 4.58291 4.64003 4.71157 4.74469 4.81459 4.94846 4.99303 5.04686 5.07896 5.12941 5.21130 5.23066 5.29456 5.39955 5.64347 5.71678 5.73510 5.77171 6.02656 6.10760 6.20265 6.29429 6.98651 7.00215 7.79017 7.79807 8.77156 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020523 B = 0.003000 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.020506 B = 9330.014074 C = 9688.016719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.072 3.928 3 N -0.704 5.704 4 C 0.620 3.380 5 N -0.764 5.764 6 C 0.105 3.895 7 C -0.155 4.155 8 N -0.717 5.717 9 C 0.210 3.790 10 C -0.058 4.058 11 C -0.168 4.168 12 C -0.070 4.070 13 C -0.235 4.235 14 C 0.112 3.888 15 O -0.233 6.233 16 C -0.411 4.411 17 H 0.103 0.897 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.018 2.982 21 H -0.263 1.263 22 H -0.273 1.273 23 H -0.252 1.252 24 C -0.181 4.181 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.037 0.963 30 H 0.411 0.589 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.406 0.594 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.120 0.880 42 H 0.272 0.728 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.007 -13.178 11.297 21.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.059 4.059 3 N -0.449 5.449 4 C 0.257 3.743 5 N -0.414 5.414 6 C -0.020 4.020 7 C -0.212 4.212 8 N -0.359 5.359 9 C 0.085 3.915 10 C -0.059 4.059 11 C -0.186 4.186 12 C -0.088 4.088 13 C -0.254 4.254 14 C 0.062 3.938 15 O -0.140 6.140 16 C -0.487 4.487 17 H 0.120 0.880 18 C -0.221 4.221 19 N -0.560 5.560 20 Si 0.837 3.163 21 H -0.188 1.188 22 H -0.198 1.198 23 H -0.175 1.175 24 C -0.201 4.201 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.252 0.748 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.243 0.757 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.164 0.836 40 H 0.166 0.834 41 H 0.138 0.862 42 H 0.081 0.919 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.016 -12.897 10.206 20.974 hybrid contribution 1.183 0.053 0.639 1.346 sum -11.832 -12.844 10.845 20.557 Atomic orbital electron populations 1.21710 0.94990 1.01492 1.01129 1.21507 0.95694 0.89277 0.99414 1.72601 1.30039 1.17732 1.24569 1.19020 0.87899 0.83436 0.83987 1.45434 1.66487 1.09744 1.19778 1.21430 0.96469 0.98230 0.85855 1.21893 1.02833 0.97743 0.98747 1.43938 1.61062 1.04053 1.26878 1.19698 0.99326 0.83015 0.89418 1.19585 0.92590 0.95955 0.97786 1.20987 1.01092 0.93791 1.02774 1.21158 0.93746 0.96614 0.97293 1.21362 0.97490 1.00681 1.05907 1.19863 0.85887 0.94300 0.93743 1.83959 1.28428 1.36395 1.65233 1.21804 1.07217 0.94275 1.25435 0.87992 1.26587 0.95600 1.03964 0.95958 1.70193 1.15708 1.40071 1.30037 0.84592 0.78853 0.74732 0.78083 1.18798 1.19808 1.17510 1.20223 0.98171 0.94102 1.07585 0.93395 0.91012 0.94022 0.92489 0.94483 0.74800 0.91732 0.92967 0.91912 0.89831 0.91502 0.75701 0.92672 0.90182 0.83599 0.83401 0.86232 0.91901 0.87729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 10.24 71.98 0.74 -1.90 16 2 C 0.07 1.60 7.03 86.38 0.61 2.21 16 3 N -0.70 -19.66 9.77 -349.37 -3.41 -23.07 16 4 C 0.62 15.70 8.36 260.54 2.18 17.88 16 5 N -0.76 -14.44 5.50 -349.42 -1.92 -16.36 16 6 C 0.11 1.61 5.78 86.38 0.50 2.11 16 7 C -0.15 -1.60 10.03 71.98 0.72 -0.88 16 8 N -0.72 -18.49 5.56 -353.17 -1.96 -20.46 16 9 C 0.21 6.01 5.79 85.63 0.50 6.50 16 10 C -0.06 -1.92 5.25 -19.88 -0.10 -2.02 16 11 C -0.17 -4.91 9.70 22.30 0.22 -4.69 16 12 C -0.07 -2.25 10.04 22.25 0.22 -2.02 16 13 C -0.23 -9.82 9.13 22.39 0.20 -9.62 16 14 C 0.11 5.47 6.65 22.58 0.15 5.62 16 15 O -0.23 -13.95 9.76 -22.76 -0.22 -14.17 16 16 C -0.41 -23.68 9.44 67.92 0.64 -23.04 16 17 H 0.10 5.34 5.30 -2.91 -0.02 5.33 16 18 C -0.02 -1.34 5.49 84.83 0.47 -0.88 16 19 N -0.92 -56.65 13.67 21.61 0.30 -56.35 16 20 Si 1.02 42.45 29.55 68.60 2.03 44.48 16 21 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 23 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 24 C -0.18 -7.61 9.65 22.39 0.22 -7.39 16 25 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.04 0.84 8.14 -2.39 -0.02 0.83 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.04 0.67 5.39 -2.39 -0.01 0.66 16 30 H 0.41 6.75 5.89 -92.71 -0.55 6.21 16 31 H 0.06 0.97 8.00 -2.39 -0.02 0.95 16 32 H 0.05 0.89 8.02 -2.39 -0.02 0.88 16 33 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.41 9.83 7.02 -92.70 -0.65 9.18 16 37 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 38 H 0.08 2.16 8.08 -2.39 -0.02 2.14 16 39 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 40 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 41 H 0.12 5.10 5.72 -2.91 -0.02 5.08 16 42 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 43 H 0.10 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -70.69 358.68 1.88 -68.82 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: -0.17 Total: 35.23 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 7.25 Total: -18.12 kcal Atomic # 7 Polarization: -109.24 SS G_CDS: -7.00 Total: -116.24 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.22 Total: -14.17 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -70.69 1.88 -68.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304012438.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.150 kcal (2) G-P(sol) polarization free energy of solvation -70.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds