Wall clock time and date at job start Tue Mar 31 2020 07:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35048 * 126.39767 * 2 1 4 4 N 1.30497 * 108.69793 * 180.27466 * 3 2 1 5 5 C 1.34132 * 109.25766 * 359.76600 * 4 3 2 6 6 C 1.34668 * 108.02004 * 359.97438 * 5 4 3 7 7 C 1.50700 * 126.59431 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47225 * 85.02840 * 7 6 5 9 9 C 1.50698 * 109.47241 * 180.02562 * 8 7 6 10 10 O 1.21295 * 120.00055 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99822 * 179.97438 * 9 8 7 12 12 C 1.37097 * 119.99626 * 179.97438 * 11 9 8 13 13 H 1.07999 * 119.99313 * 137.56560 * 12 11 9 14 14 C 1.38947 * 120.00587 * 317.56521 * 12 11 9 15 15 N 1.31413 * 119.99715 * 339.86898 * 14 12 11 16 16 Si 1.86793 * 120.00189 * 159.86439 * 14 12 11 17 17 H 1.48496 * 109.47101 * 90.00313 * 16 14 12 18 18 H 1.48503 * 109.47293 * 210.00349 * 16 14 12 19 19 H 1.48500 * 109.47454 * 330.00477 * 16 14 12 20 20 C 1.46496 * 119.99796 * 0.02562 * 11 9 8 21 21 C 1.54267 * 110.03116 * 119.86298 * 20 11 9 22 22 C 1.54960 * 104.16104 * 95.75177 * 21 20 11 23 23 C 1.54885 * 102.78100 * 37.88666 * 22 21 20 24 24 C 1.53875 * 110.02940 * 237.07614 * 20 11 9 25 25 H 1.09009 * 109.46836 * 270.12100 * 1 2 3 26 26 H 1.09007 * 109.47264 * 30.11462 * 1 2 3 27 27 H 1.08991 * 109.47742 * 150.12119 * 1 2 3 28 28 H 1.07995 * 125.64804 * 0.02562 * 3 2 1 29 29 H 1.08000 * 125.99052 * 180.02562 * 5 4 3 30 30 H 1.08995 * 109.46895 * 325.02914 * 7 6 5 31 31 H 1.08996 * 109.47280 * 205.02618 * 7 6 5 32 32 H 1.09000 * 109.46908 * 59.99801 * 8 7 6 33 33 H 1.09007 * 109.46474 * 300.00394 * 8 7 6 34 34 H 0.97003 * 120.00038 * 175.13386 * 15 14 12 35 35 H 1.08999 * 110.02194 * 358.46825 * 20 11 9 36 36 H 1.08999 * 110.48651 * 214.39783 * 21 20 11 37 37 H 1.09003 * 110.48980 * 337.04122 * 21 20 11 38 38 H 1.08999 * 110.71984 * 279.56899 * 22 21 20 39 39 H 1.09003 * 110.92688 * 156.29894 * 22 21 20 40 40 H 1.09005 * 110.49129 * 203.40447 * 23 22 21 41 41 H 1.09002 * 110.59883 * 80.81694 * 23 22 21 42 42 H 1.08998 * 110.03653 * 359.95495 * 24 20 11 43 43 H 1.09007 * 110.03395 * 121.38841 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6903 -0.0059 5 6 3.5460 -0.6505 -0.0047 6 6 2.2772 -1.1018 0.0028 7 6 1.8362 -2.5428 0.0062 8 6 1.8147 -3.0662 1.4438 9 6 1.3743 -4.5074 1.4472 10 8 1.1038 -5.0613 0.4026 11 7 1.2811 -5.1808 2.6110 12 6 0.8799 -6.4918 2.6140 13 1 1.3843 -7.2092 3.2443 14 6 -0.1755 -6.8974 1.8064 15 7 -1.0338 -6.0117 1.3529 16 14 -0.3740 -8.7015 1.3651 17 1 -1.2228 -9.3698 2.3839 18 1 -1.0175 -8.8171 0.0317 19 1 0.9604 -9.3521 1.3288 20 6 1.6073 -4.5115 3.8726 21 6 0.3775 -4.5113 4.8040 22 6 0.5935 -5.7443 5.7174 23 6 2.1229 -5.7266 5.9611 24 6 2.7165 -5.2842 4.6076 25 1 -0.3633 0.0022 1.0278 26 1 -0.3634 0.8890 -0.5156 27 1 -0.3634 -0.8910 -0.5119 28 1 1.9334 2.1144 0.0004 29 1 4.4368 -1.2612 -0.0082 30 1 2.5318 -3.1370 -0.5864 31 1 0.8370 -2.6181 -0.4227 32 1 1.1192 -2.4719 2.0364 33 1 2.8140 -2.9909 1.8728 34 1 -1.7286 -6.2829 0.7327 35 1 1.9299 -3.4884 3.6798 36 1 0.3487 -3.5975 5.3976 37 1 -0.5396 -4.6203 4.2251 38 1 0.2943 -6.6596 5.2067 39 1 0.0513 -5.6330 6.6564 40 1 2.4786 -6.7222 6.2266 41 1 2.3785 -5.0104 6.7421 42 1 3.0116 -6.1576 4.0261 43 1 3.5775 -4.6360 4.7716 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330074727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:30 Heat of formation + Delta-G solvation = 25.120511 kcal Electronic energy + Delta-G solvation = -24105.169353 eV Core-core repulsion = 20765.395450 eV Total energy + Delta-G solvation = -3339.773902 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.91201 -38.91371 -36.75942 -34.04063 -33.46895 -32.75959 -31.42503 -28.50933 -27.99949 -26.96104 -26.88317 -25.16216 -23.14391 -21.25333 -20.23859 -19.79278 -19.64663 -18.72329 -16.98152 -16.28088 -15.83489 -15.51239 -15.03863 -14.76395 -14.38998 -14.33466 -13.81280 -13.54797 -13.42709 -12.97519 -12.87340 -12.81025 -12.54198 -12.09385 -12.00878 -11.43511 -11.31979 -11.00275 -10.87330 -10.68422 -10.55420 -10.53728 -10.44172 -10.34794 -10.22766 -9.88653 -9.78539 -9.75405 -9.43434 -8.69914 -8.21187 -7.93792 -7.06136 -6.06601 -3.79144 2.20231 2.92085 3.31532 3.32866 3.41827 3.44723 4.24028 4.40425 4.74881 4.78785 4.82784 5.07376 5.13403 5.25503 5.26848 5.34862 5.41549 5.50621 5.56799 5.66379 5.69975 5.92912 5.97603 6.01988 6.11210 6.20480 6.23842 6.25732 6.31977 6.38804 6.50947 6.53234 6.56959 6.65697 6.71453 6.93880 6.94559 7.02578 7.16971 7.32937 7.68498 8.21694 8.32831 9.12498 9.22721 9.73796 10.35175 11.01442 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015809 B = 0.005109 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.755051 B = 5479.671676 C = 6472.288826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.459 5.459 3 C 0.165 3.835 4 N -0.496 5.496 5 C -0.036 4.036 6 C -0.006 4.006 7 C -0.025 4.025 8 C -0.125 4.125 9 C 0.475 3.525 10 O -0.539 6.539 11 N -0.447 5.447 12 C -0.333 4.333 13 H 0.077 0.923 14 C 0.074 3.926 15 N -0.834 5.834 16 Si 0.900 3.100 17 H -0.285 1.285 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.129 3.871 21 C -0.122 4.122 22 C -0.116 4.116 23 C -0.119 4.119 24 C -0.131 4.131 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.200 0.800 29 H 0.167 0.833 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.261 0.739 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.048 0.952 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.076 0.924 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.026 9.735 3.315 10.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.142 5.142 3 C -0.117 4.117 4 N -0.214 5.214 5 C -0.183 4.183 6 C -0.120 4.120 7 C -0.064 4.064 8 C -0.166 4.166 9 C 0.263 3.737 10 O -0.417 6.417 11 N -0.170 5.170 12 C -0.460 4.460 13 H 0.094 0.906 14 C -0.136 4.136 15 N -0.468 5.468 16 Si 0.727 3.273 17 H -0.211 1.211 18 H -0.212 1.212 19 H -0.198 1.198 20 C 0.024 3.976 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.156 4.156 24 C -0.170 4.170 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.108 0.892 28 H 0.217 0.783 29 H 0.185 0.815 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.211 9.994 2.695 10.585 hybrid contribution -1.017 -1.179 -0.122 1.562 sum 1.194 8.815 2.573 9.260 Atomic orbital electron populations 1.22056 0.76704 1.04663 1.03846 1.45322 1.07611 1.06820 1.54471 1.24798 0.85828 0.93302 1.07744 1.70216 1.19440 1.12220 1.19560 1.22033 0.95894 0.90883 1.09536 1.21611 0.91128 0.90267 1.09042 1.19766 1.02884 0.86208 0.97556 1.21575 1.01778 0.96845 0.96425 1.19820 0.82142 0.87144 0.84636 1.90517 1.50526 1.69478 1.31197 1.43374 1.60628 1.11000 1.01950 1.18796 1.13957 0.83572 1.29672 0.90563 1.25073 0.93310 0.97837 0.97352 1.69878 1.13476 1.35035 1.28444 0.86428 0.78165 0.84910 0.77789 1.21113 1.21184 1.19808 1.21682 0.93855 0.94938 0.87160 1.22568 0.99950 0.96412 0.97156 1.22448 0.94786 1.00153 0.98009 1.22276 0.96592 0.99988 0.96794 1.22495 0.97481 1.00811 0.96171 0.90410 0.89698 0.89183 0.78307 0.81544 0.89156 0.90687 0.91350 0.90673 0.92918 0.91606 0.93328 0.90202 0.90157 0.93349 0.92583 0.92846 0.90525 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 11.00 59.85 0.66 1.35 16 2 N -0.46 -6.06 3.15 -121.36 -0.38 -6.44 16 3 C 0.16 2.13 12.56 -90.37 -1.14 1.00 16 4 N -0.50 -7.84 11.25 -14.66 -0.16 -8.01 16 5 C -0.04 -0.57 11.79 -17.81 -0.21 -0.78 16 6 C -0.01 -0.08 6.21 -81.60 -0.51 -0.59 16 7 C -0.03 -0.43 4.84 -27.88 -0.13 -0.56 16 8 C -0.13 -2.30 4.00 -27.88 -0.11 -2.41 16 9 C 0.48 11.35 6.98 -10.99 -0.08 11.27 16 10 O -0.54 -15.02 13.64 5.54 0.08 -14.94 16 11 N -0.45 -10.50 2.40 -106.55 -0.26 -10.75 16 12 C -0.33 -8.62 6.97 -14.93 -0.10 -8.72 16 13 H 0.08 1.94 6.88 -52.49 -0.36 1.58 16 14 C 0.07 2.00 4.32 -17.47 -0.08 1.93 16 15 N -0.83 -23.70 11.71 55.50 0.65 -23.05 16 16 Si 0.90 21.53 29.60 -169.99 -5.03 16.50 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.13 2.45 3.26 -66.81 -0.22 2.23 16 21 C -0.12 -2.24 6.13 -25.03 -0.15 -2.39 16 22 C -0.12 -1.97 6.56 -24.70 -0.16 -2.13 16 23 C -0.12 -1.81 6.83 -25.07 -0.17 -1.98 16 24 C -0.13 -2.23 6.19 -25.61 -0.16 -2.39 16 25 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.09 0.97 7.11 -51.93 -0.37 0.60 16 28 H 0.20 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.17 2.34 8.06 -52.49 -0.42 1.92 16 30 H 0.09 1.59 8.10 -51.93 -0.42 1.17 16 31 H 0.07 1.36 7.04 -51.93 -0.37 0.99 16 32 H 0.07 1.22 7.82 -51.93 -0.41 0.81 16 33 H 0.07 1.27 7.77 -51.92 -0.40 0.87 16 34 H 0.26 7.25 8.32 -40.82 -0.34 6.91 16 35 H 0.07 1.15 5.83 -51.93 -0.30 0.85 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.08 1.74 8.02 -51.93 -0.42 1.32 16 38 H 0.08 1.56 7.16 -51.93 -0.37 1.19 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 1.46 6.82 -51.93 -0.35 1.11 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 344.70 15.07 5.19 5.19 Total: -1.00 -32.65 344.70 -9.19 -41.83 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -6.71 Total: 3.85 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -2.56 Total: -4.18 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: -0.15 Total: -48.26 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: 0.08 Total: -14.94 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.65 -9.19 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330074727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.952 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds