Wall clock time and date at job start Tue Mar 31 2020 07:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35048 * 126.39767 * 2 1 4 4 N 1.30497 * 108.69793 * 180.27466 * 3 2 1 5 5 C 1.34132 * 109.25766 * 359.76600 * 4 3 2 6 6 C 1.34668 * 108.02004 * 359.97438 * 5 4 3 7 7 C 1.50700 * 126.59431 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47225 * 85.02840 * 7 6 5 9 9 C 1.50698 * 109.47241 * 180.02562 * 8 7 6 10 10 O 1.21295 * 120.00055 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99822 * 179.97438 * 9 8 7 12 12 C 1.37097 * 119.99626 * 179.97438 * 11 9 8 13 13 H 1.07999 * 119.99313 * 137.56560 * 12 11 9 14 14 C 1.38947 * 120.00587 * 317.56521 * 12 11 9 15 15 N 1.31413 * 119.99715 * 339.86898 * 14 12 11 16 16 Si 1.86793 * 120.00189 * 159.86439 * 14 12 11 17 17 H 1.48496 * 109.47101 * 90.00313 * 16 14 12 18 18 H 1.48503 * 109.47293 * 210.00349 * 16 14 12 19 19 H 1.48500 * 109.47454 * 330.00477 * 16 14 12 20 20 C 1.46496 * 119.99796 * 0.02562 * 11 9 8 21 21 C 1.54267 * 110.03116 * 119.86298 * 20 11 9 22 22 C 1.54960 * 104.16104 * 95.75177 * 21 20 11 23 23 C 1.54885 * 102.78100 * 37.88666 * 22 21 20 24 24 C 1.53875 * 110.02940 * 237.07614 * 20 11 9 25 25 H 1.09009 * 109.46836 * 270.12100 * 1 2 3 26 26 H 1.09007 * 109.47264 * 30.11462 * 1 2 3 27 27 H 1.08991 * 109.47742 * 150.12119 * 1 2 3 28 28 H 1.07995 * 125.64804 * 0.02562 * 3 2 1 29 29 H 1.08000 * 125.99052 * 180.02562 * 5 4 3 30 30 H 1.08995 * 109.46895 * 325.02914 * 7 6 5 31 31 H 1.08996 * 109.47280 * 205.02618 * 7 6 5 32 32 H 1.09000 * 109.46908 * 59.99801 * 8 7 6 33 33 H 1.09007 * 109.46474 * 300.00394 * 8 7 6 34 34 H 0.97003 * 120.00038 * 175.13386 * 15 14 12 35 35 H 1.08999 * 110.02194 * 358.46825 * 20 11 9 36 36 H 1.08999 * 110.48651 * 214.39783 * 21 20 11 37 37 H 1.09003 * 110.48980 * 337.04122 * 21 20 11 38 38 H 1.08999 * 110.71984 * 279.56899 * 22 21 20 39 39 H 1.09003 * 110.92688 * 156.29894 * 22 21 20 40 40 H 1.09005 * 110.49129 * 203.40447 * 23 22 21 41 41 H 1.09002 * 110.59883 * 80.81694 * 23 22 21 42 42 H 1.08998 * 110.03653 * 359.95495 * 24 20 11 43 43 H 1.09007 * 110.03395 * 121.38841 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6903 -0.0059 5 6 3.5460 -0.6505 -0.0047 6 6 2.2772 -1.1018 0.0028 7 6 1.8362 -2.5428 0.0062 8 6 1.8147 -3.0662 1.4438 9 6 1.3743 -4.5074 1.4472 10 8 1.1038 -5.0613 0.4026 11 7 1.2811 -5.1808 2.6110 12 6 0.8799 -6.4918 2.6140 13 1 1.3843 -7.2092 3.2443 14 6 -0.1755 -6.8974 1.8064 15 7 -1.0338 -6.0117 1.3529 16 14 -0.3740 -8.7015 1.3651 17 1 -1.2228 -9.3698 2.3839 18 1 -1.0175 -8.8171 0.0317 19 1 0.9604 -9.3521 1.3288 20 6 1.6073 -4.5115 3.8726 21 6 0.3775 -4.5113 4.8040 22 6 0.5935 -5.7443 5.7174 23 6 2.1229 -5.7266 5.9611 24 6 2.7165 -5.2842 4.6076 25 1 -0.3633 0.0022 1.0278 26 1 -0.3634 0.8890 -0.5156 27 1 -0.3634 -0.8910 -0.5119 28 1 1.9334 2.1144 0.0004 29 1 4.4368 -1.2612 -0.0082 30 1 2.5318 -3.1370 -0.5864 31 1 0.8370 -2.6181 -0.4227 32 1 1.1192 -2.4719 2.0364 33 1 2.8140 -2.9909 1.8728 34 1 -1.7286 -6.2829 0.7327 35 1 1.9299 -3.4884 3.6798 36 1 0.3487 -3.5975 5.3976 37 1 -0.5396 -4.6203 4.2251 38 1 0.2943 -6.6596 5.2067 39 1 0.0513 -5.6330 6.6564 40 1 2.4786 -6.7222 6.2266 41 1 2.3785 -5.0104 6.7421 42 1 3.0116 -6.1576 4.0261 43 1 3.5775 -4.6360 4.7716 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330074727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:29 Heat of formation + Delta-G solvation = 7.439061 kcal Electronic energy + Delta-G solvation = -24105.936078 eV Core-core repulsion = 20765.395450 eV Total energy + Delta-G solvation = -3340.540628 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.99189 -40.62388 -38.37369 -35.38000 -34.90379 -34.32366 -33.28512 -29.86583 -29.38033 -28.51909 -27.78442 -26.83601 -24.76961 -22.31310 -21.76778 -21.18729 -20.93242 -20.35746 -18.35470 -17.76288 -17.43150 -16.82160 -16.57600 -16.22632 -16.03622 -15.79325 -15.29640 -15.05676 -14.65849 -14.33081 -14.15687 -13.85452 -13.69058 -13.62603 -13.39412 -13.13077 -12.89798 -12.79702 -12.60253 -12.35176 -12.27003 -12.03423 -11.96804 -11.80454 -11.74304 -11.42293 -11.17298 -10.91845 -10.68102 -10.46813 -9.95951 -9.27470 -9.00048 -8.11678 -5.84835 1.10970 1.37570 1.44165 1.50891 1.95601 2.21237 2.34728 2.52656 3.17705 3.33651 3.74187 3.89482 3.92957 3.97416 4.00148 4.08943 4.17856 4.23839 4.38944 4.43910 4.56443 4.58297 4.68304 4.72620 4.76041 4.78217 4.87514 4.93070 4.97812 5.00490 5.15489 5.16776 5.22420 5.30208 5.49530 5.49988 5.56993 5.62718 5.75049 5.79032 6.31104 6.35755 7.13711 7.14085 7.31045 7.82041 8.45681 8.95374 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015809 B = 0.005109 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.755051 B = 5479.671676 C = 6472.288826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.460 5.460 3 C 0.182 3.818 4 N -0.531 5.531 5 C -0.044 4.044 6 C -0.022 4.022 7 C -0.010 4.010 8 C -0.107 4.107 9 C 0.460 3.540 10 O -0.589 6.589 11 N -0.459 5.459 12 C -0.330 4.330 13 H 0.076 0.924 14 C 0.025 3.975 15 N -0.866 5.866 16 Si 0.949 3.051 17 H -0.270 1.270 18 H -0.297 1.297 19 H -0.272 1.272 20 C 0.120 3.880 21 C -0.118 4.118 22 C -0.116 4.116 23 C -0.109 4.109 24 C -0.128 4.128 25 H 0.085 0.915 26 H 0.122 0.878 27 H 0.074 0.926 28 H 0.244 0.756 29 H 0.172 0.828 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.253 0.747 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.036 0.964 38 H 0.045 0.955 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.085 0.915 42 H 0.049 0.951 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.792 11.693 5.174 13.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.142 5.142 3 C -0.100 4.100 4 N -0.249 5.249 5 C -0.191 4.191 6 C -0.138 4.138 7 C -0.049 4.049 8 C -0.147 4.147 9 C 0.249 3.751 10 O -0.471 6.471 11 N -0.180 5.180 12 C -0.458 4.458 13 H 0.093 0.907 14 C -0.180 4.180 15 N -0.503 5.503 16 Si 0.776 3.224 17 H -0.196 1.196 18 H -0.223 1.223 19 H -0.197 1.197 20 C 0.016 3.984 21 C -0.157 4.157 22 C -0.154 4.154 23 C -0.146 4.146 24 C -0.167 4.167 25 H 0.104 0.896 26 H 0.140 0.860 27 H 0.093 0.907 28 H 0.260 0.740 29 H 0.190 0.810 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.062 0.938 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.067 0.933 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.979 11.941 4.605 13.140 hybrid contribution -1.228 -1.712 -0.669 2.211 sum 1.750 10.229 3.935 11.099 Atomic orbital electron populations 1.22289 0.74841 1.05773 1.04720 1.45514 1.08776 1.06200 1.53759 1.25656 0.84998 0.94689 1.04641 1.70232 1.21206 1.12064 1.21446 1.22228 0.96236 0.91354 1.09307 1.21238 0.91596 0.89839 1.11100 1.19461 1.01523 0.87605 0.96322 1.21411 1.02643 0.92989 0.97695 1.20744 0.81141 0.89139 0.84044 1.90479 1.52563 1.71074 1.32953 1.43630 1.59973 1.10661 1.03724 1.18946 1.12989 0.85107 1.28774 0.90673 1.25760 0.93553 1.00812 0.97873 1.69980 1.14299 1.36432 1.29574 0.85646 0.78077 0.81529 0.77191 1.19583 1.22315 1.19661 1.21994 0.95033 0.95903 0.85501 1.22512 0.97426 0.98629 0.97095 1.22404 0.96751 0.97861 0.98369 1.22252 0.94572 1.01354 0.96466 1.22462 0.97721 0.99973 0.96500 0.89633 0.86004 0.90732 0.74045 0.81049 0.90464 0.92495 0.90437 0.88679 0.93780 0.89669 0.90028 0.94548 0.93602 0.90895 0.91877 0.89684 0.93258 0.90092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.15 11.00 127.77 1.41 2.56 16 2 N -0.46 -11.19 3.15 -537.89 -1.70 -12.88 16 3 C 0.18 4.15 12.56 180.26 2.26 6.41 16 4 N -0.53 -15.73 11.25 -200.31 -2.25 -17.98 16 5 C -0.04 -1.33 11.79 83.52 0.98 -0.35 16 6 C -0.02 -0.67 6.21 40.95 0.25 -0.41 16 7 C -0.01 -0.35 4.84 29.85 0.14 -0.20 16 8 C -0.11 -3.89 4.00 29.85 0.12 -3.77 16 9 C 0.46 22.49 6.98 87.66 0.61 23.10 16 10 O -0.59 -34.21 13.64 -3.08 -0.04 -34.25 16 11 N -0.46 -21.81 2.40 -609.39 -1.46 -23.27 16 12 C -0.33 -17.53 6.97 84.04 0.59 -16.94 16 13 H 0.08 3.92 6.88 -2.91 -0.02 3.90 16 14 C 0.03 1.43 4.32 84.93 0.37 1.79 16 15 N -0.87 -51.35 11.71 21.66 0.25 -51.10 16 16 Si 0.95 45.53 29.60 68.60 2.03 47.56 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 18 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 19 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 20 C 0.12 4.40 3.26 45.72 0.15 4.55 16 21 C -0.12 -4.17 6.13 31.69 0.19 -3.97 16 22 C -0.12 -3.74 6.56 31.91 0.21 -3.53 16 23 C -0.11 -2.96 6.83 31.67 0.22 -2.75 16 24 C -0.13 -4.07 6.19 31.32 0.19 -3.87 16 25 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.07 1.57 7.11 -2.39 -0.02 1.56 16 28 H 0.24 3.06 8.06 -2.91 -0.02 3.03 16 29 H 0.17 4.75 8.06 -2.91 -0.02 4.73 16 30 H 0.08 2.83 8.10 -2.39 -0.02 2.81 16 31 H 0.06 2.15 7.04 -2.39 -0.02 2.13 16 32 H 0.08 2.69 7.82 -2.39 -0.02 2.67 16 33 H 0.09 3.08 7.77 -2.38 -0.02 3.06 16 34 H 0.25 14.76 8.32 -92.71 -0.77 13.99 16 35 H 0.09 2.77 5.83 -2.39 -0.01 2.75 16 36 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.04 1.60 8.02 -2.39 -0.02 1.58 16 38 H 0.05 1.78 7.16 -2.39 -0.02 1.76 16 39 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.05 1.83 6.82 -2.39 -0.02 1.82 16 43 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 Total: -1.00 -74.17 344.70 5.52 -68.65 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.99 Total: 20.67 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 7.70 Total: 2.60 kcal Atomic # 7 Polarization: -100.07 SS G_CDS: -5.16 Total: -105.23 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -0.04 Total: -34.25 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -74.17 5.52 -68.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330074727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.088 kcal (2) G-P(sol) polarization free energy of solvation -74.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds