Wall clock time and date at job start Tue Mar 31 2020 07:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40089 * 126.03859 * 2 1 4 4 C 1.30839 * 108.20647 * 180.02562 * 3 2 1 5 5 C 1.39870 * 108.19974 * 359.77874 * 4 3 2 6 6 C 1.34950 * 126.03709 * 180.02562 * 2 1 3 7 7 C 1.50696 * 126.12742 * 359.94785 * 6 2 1 8 8 H 1.08994 * 109.70600 * 188.42092 * 7 6 2 9 9 C 1.53200 * 109.58467 * 308.77713 * 7 6 2 10 10 C 1.53045 * 109.33655 * 174.40387 * 9 7 6 11 11 C 1.53032 * 109.54196 * 298.68424 * 10 9 7 12 12 C 1.53186 * 109.34190 * 61.31403 * 11 10 9 13 13 N 1.46925 * 109.58798 * 68.06280 * 7 6 2 14 14 C 1.34782 * 120.63128 * 6.62976 * 13 7 6 15 15 O 1.21283 * 119.99571 * 5.08211 * 14 13 7 16 16 C 1.50701 * 120.00228 * 185.08584 * 14 13 7 17 17 C 1.52999 * 109.47036 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.47036 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99607 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00081 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00108 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00133 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47125 * 90.00034 * 22 20 18 24 24 H 1.48497 * 109.47433 * 210.00562 * 22 20 18 25 25 H 1.48506 * 109.46794 * 330.00009 * 22 20 18 26 26 H 1.09000 * 109.47473 * 264.95482 * 1 2 3 27 27 H 1.09005 * 109.47169 * 24.95275 * 1 2 3 28 28 H 1.09002 * 109.47361 * 144.95273 * 1 2 3 29 29 H 1.07994 * 125.90110 * 180.02562 * 4 3 2 30 30 H 1.08007 * 126.03936 * 180.23360 * 5 4 3 31 31 H 1.09000 * 109.49259 * 294.37248 * 9 7 6 32 32 H 1.09000 * 109.49804 * 54.43799 * 9 7 6 33 33 H 1.09002 * 109.46056 * 58.67121 * 10 9 7 34 34 H 1.08998 * 109.45504 * 178.62496 * 10 9 7 35 35 H 1.09010 * 109.46804 * 301.36803 * 11 10 9 36 36 H 1.08995 * 109.49847 * 181.28829 * 11 10 9 37 37 H 1.08998 * 109.58991 * 185.59577 * 12 11 10 38 38 H 1.09007 * 109.58641 * 65.16913 * 12 11 10 39 39 H 1.08995 * 109.46726 * 300.00003 * 16 14 13 40 40 H 1.09000 * 109.46853 * 59.99600 * 16 14 13 41 41 H 1.09005 * 109.47051 * 300.00003 * 17 16 14 42 42 H 1.08997 * 109.46834 * 59.99939 * 17 16 14 43 43 H 0.97003 * 120.00191 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5347 0.7321 -0.0006 5 6 3.5436 -0.6665 0.0042 6 6 2.2589 -1.0913 -0.0005 7 6 1.7973 -2.5258 0.0000 8 1 2.6511 -3.1865 0.1497 9 6 0.7803 -2.7377 1.1260 10 6 0.2116 -4.1556 1.0350 11 6 -0.5060 -4.3342 -0.3048 12 6 0.4962 -4.1404 -1.4470 13 7 1.1532 -2.8364 -1.2835 14 6 1.1652 -1.9423 -2.2920 15 8 1.7888 -0.9084 -2.1783 16 6 0.4036 -2.2273 -3.5608 17 6 0.5810 -1.0610 -4.5350 18 6 -0.1811 -1.3457 -5.8035 19 1 -0.7361 -2.2666 -5.9049 20 6 -0.1690 -0.4310 -6.8351 21 7 -0.8345 -0.6793 -7.9419 22 14 0.7916 1.1615 -6.6601 23 1 2.1778 0.9602 -7.1531 24 1 0.1327 2.2272 -7.4570 25 1 0.8279 1.5631 -5.2308 26 1 -0.3634 -0.0904 1.0237 27 1 -0.3634 0.9318 -0.4336 28 1 -0.3634 -0.8413 -0.5901 29 1 4.4054 1.3710 -0.0003 30 1 4.4210 -1.2964 0.0086 31 1 1.2716 -2.6038 2.0897 32 1 -0.0288 -2.0141 1.0264 33 1 1.0240 -4.8783 1.1104 34 1 -0.4942 -4.3166 1.8498 35 1 -1.3033 -3.5959 -0.3913 36 1 -0.9304 -5.3367 -0.3594 37 1 -0.0283 -4.1681 -2.4021 38 1 1.2441 -4.9328 -1.4153 39 1 0.7841 -3.1420 -4.0152 40 1 -0.6546 -2.3495 -3.3297 41 1 0.2001 -0.1465 -4.0802 42 1 1.6391 -0.9385 -4.7661 43 1 -0.8256 -0.0359 -8.6679 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330883874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:25 Heat of formation + Delta-G solvation = 54.413817 kcal Electronic energy + Delta-G solvation = -24771.138373 eV Core-core repulsion = 21432.634723 eV Total energy + Delta-G solvation = -3338.503649 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.42794 -39.52834 -37.38945 -33.78898 -33.14012 -32.85454 -32.22457 -31.03933 -28.92376 -26.68021 -26.36077 -24.97134 -23.51739 -21.76884 -20.99622 -20.21561 -19.80011 -18.64991 -17.33458 -16.51722 -15.99374 -15.73899 -15.47250 -14.82938 -14.54250 -14.29795 -14.11639 -13.98638 -13.78599 -13.53091 -13.24365 -13.08772 -12.59368 -12.54186 -12.43740 -12.23766 -12.14093 -11.53466 -11.44080 -11.15820 -10.98952 -10.93967 -10.84898 -10.27309 -10.17386 -10.09170 -9.84551 -9.61932 -9.21017 -8.65941 -8.53026 -8.45269 -7.89547 -6.05709 -4.04684 2.17705 2.87541 3.00557 3.05493 3.36973 3.39144 3.43775 3.55855 4.26574 4.49272 4.52174 4.57621 4.75356 4.83005 4.89110 5.04170 5.14053 5.22312 5.30070 5.32568 5.38120 5.43961 5.51245 5.57836 5.58333 5.69074 5.74996 5.76980 5.93827 5.97883 6.00864 6.04949 6.09609 6.38861 6.53010 6.64621 7.06403 7.33306 7.36673 7.39170 7.54076 7.76348 8.12713 8.45207 8.56089 8.96697 9.57708 11.06982 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.005829 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.210327 B = 4802.467593 C = 6026.781630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.348 5.348 3 N -0.296 5.296 4 C 0.048 3.952 5 C -0.279 4.279 6 C 0.131 3.869 7 C 0.207 3.793 8 H 0.093 0.907 9 C -0.138 4.138 10 C -0.116 4.116 11 C -0.138 4.138 12 C 0.108 3.892 13 N -0.624 5.624 14 C 0.501 3.499 15 O -0.503 6.503 16 C -0.118 4.118 17 C 0.005 3.995 18 C -0.525 4.525 19 H 0.072 0.928 20 C 0.071 3.929 21 N -0.903 5.903 22 Si 0.876 3.124 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.262 1.262 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.173 0.827 30 H 0.135 0.865 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.021 0.979 42 H 0.018 0.982 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.796 -8.380 21.122 22.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.131 5.131 3 N -0.118 5.118 4 C -0.138 4.138 5 C -0.309 4.309 6 C 0.002 3.998 7 C 0.102 3.898 8 H 0.110 0.890 9 C -0.177 4.177 10 C -0.154 4.154 11 C -0.176 4.176 12 C -0.015 4.015 13 N -0.362 5.362 14 C 0.291 3.709 15 O -0.376 6.376 16 C -0.158 4.158 17 C -0.033 4.033 18 C -0.563 4.563 19 H 0.090 0.910 20 C -0.130 4.130 21 N -0.542 5.542 22 Si 0.703 3.297 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.186 1.186 26 H 0.085 0.915 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.190 0.810 30 H 0.152 0.848 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.039 0.961 42 H 0.036 0.964 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.149 -6.710 20.964 22.117 hybrid contribution 0.995 0.003 -0.235 1.023 sum 3.144 -6.707 20.729 22.013 Atomic orbital electron populations 1.21774 0.75737 1.04565 1.01594 1.47958 1.05564 1.03116 1.56492 1.77221 1.01734 1.08028 1.24845 1.23491 0.95041 0.94777 1.00461 1.20840 0.95377 0.95029 1.19621 1.20249 0.91498 0.88811 0.99206 1.19639 0.95499 0.90292 0.84346 0.88966 1.22158 0.99153 0.98312 0.98053 1.21492 1.00182 0.96147 0.97572 1.21955 0.98405 1.02601 0.94633 1.21763 0.95400 0.84303 0.99998 1.48501 1.57547 1.17572 1.12555 1.21684 0.81136 0.82894 0.85151 1.90793 1.41827 1.25752 1.79180 1.21693 0.99283 1.03030 0.91813 1.19340 0.97384 0.92826 0.93748 1.21083 1.31013 1.06228 0.97982 0.90978 1.24944 0.94950 0.98150 0.94989 1.69907 1.42313 1.36392 1.05546 0.86817 0.80315 0.83542 0.79000 1.20237 1.21414 1.18628 0.91545 0.89439 0.90361 0.80976 0.84755 0.90535 0.90923 0.91538 0.91431 0.91313 0.90448 0.88615 0.91356 0.89733 0.89842 0.96086 0.96381 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.45 9.07 59.84 0.54 1.99 16 2 N -0.35 -5.76 2.72 -63.89 -0.17 -5.93 16 3 N -0.30 -5.46 12.58 30.62 0.39 -5.07 16 4 C 0.05 0.78 12.03 -17.36 -0.21 0.57 16 5 C -0.28 -4.33 10.32 -40.01 -0.41 -4.74 16 6 C 0.13 1.99 3.25 -82.26 -0.27 1.72 16 7 C 0.21 2.45 3.04 -68.75 -0.21 2.24 16 8 H 0.09 0.98 8.12 -51.93 -0.42 0.55 16 9 C -0.14 -1.23 5.23 -26.60 -0.14 -1.37 16 10 C -0.12 -0.80 5.89 -26.69 -0.16 -0.96 16 11 C -0.14 -1.03 6.08 -26.62 -0.16 -1.19 16 12 C 0.11 1.03 6.35 -3.71 -0.02 1.01 16 13 N -0.62 -8.08 2.66 -166.53 -0.44 -8.52 16 14 C 0.50 8.82 6.12 -10.98 -0.07 8.75 16 15 O -0.50 -10.71 11.32 5.55 0.06 -10.64 16 16 C -0.12 -2.24 3.99 -27.88 -0.11 -2.36 16 17 C 0.00 0.12 3.33 -27.88 -0.09 0.03 16 18 C -0.53 -14.97 9.66 -34.44 -0.33 -15.30 16 19 H 0.07 2.13 7.99 -52.49 -0.42 1.72 16 20 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 21 N -0.90 -28.02 13.96 55.43 0.77 -27.24 16 22 Si 0.88 23.05 27.47 -169.99 -4.67 18.38 16 23 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 25 H -0.26 -6.97 6.54 56.52 0.37 -6.60 16 26 H 0.07 0.71 7.43 -51.93 -0.39 0.32 16 27 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.08 1.07 5.77 -51.93 -0.30 0.77 16 29 H 0.17 2.23 8.06 -52.49 -0.42 1.81 16 30 H 0.13 1.79 8.06 -52.48 -0.42 1.36 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.70 4.85 -51.93 -0.25 0.44 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.10 0.96 5.93 -51.93 -0.31 0.65 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 1.50 7.73 -51.93 -0.40 1.10 16 40 H 0.08 1.46 7.90 -51.93 -0.41 1.05 16 41 H 0.02 0.55 7.16 -51.93 -0.37 0.18 16 42 H 0.02 0.47 7.53 -51.93 -0.39 0.08 16 43 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 LS Contribution 333.10 15.07 5.02 5.02 Total: -1.00 -35.90 333.10 -7.42 -43.31 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -6.63 Total: -1.71 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.74 Total: -7.60 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 0.54 Total: -46.77 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.06 Total: -10.64 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -4.67 Total: 18.38 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.90 -7.42 -43.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330883874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.727 kcal (2) G-P(sol) polarization free energy of solvation -35.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds